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Understanding Phylogeny and Cladograms

The document discusses phylogeny, which involves the classification of organisms and their evolutionary relationships through systematics, taxonomy, and phylogenetics. It explains the use of phylogenetic trees and cladograms to depict evolutionary history, including concepts like monophyletic, paraphyletic, and polyphyletic groups. Additionally, it introduces the principle of parsimony for resolving conflicts among characters and provides practice questions for understanding these concepts.

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0% found this document useful (0 votes)
6 views14 pages

Understanding Phylogeny and Cladograms

The document discusses phylogeny, which involves the classification of organisms and their evolutionary relationships through systematics, taxonomy, and phylogenetics. It explains the use of phylogenetic trees and cladograms to depict evolutionary history, including concepts like monophyletic, paraphyletic, and polyphyletic groups. Additionally, it introduces the principle of parsimony for resolving conflicts among characters and provides practice questions for understanding these concepts.

Uploaded by

angelinakhalife1
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PPTX, PDF, TXT or read online on Scribd

© Getting Down with Science

Phylogeny
● Systematics: classification of
organisms and determining
their evolutionary
relationships
○ Taxonomy: naming and
classifying species
○ Phylogenetics:
hypothesis of evolutionary
history
■ Use phylogenetic trees to
show evolution
© Getting Down with Science
Phylogeny
● To determine evolutionary
relationships, scientists use:
○ Fossil records
○ DNA
○ Proteins
○ Homologous structures

© Getting Down with Science


Phylogenetic Trees
● Phylogenetic trees: diagrams that represent the
evolutionary history of a group of organisms
○ Similar to cladograms, except trees show the
amount of change over time measured by
fossils

© Getting Down with Science


Cladograms
● Each line represents a lineage
● Each branching point is a node
○ Nodes represent common ancestors
■ Nodes and all branches from it are called clades
■ Species in a clade have shared derived features
○ The root is the common ancestor of all the
species

© Getting Down with Science


Cladograms
● Two clades that emerge from the same node are
sister taxa
● A lineage that evolved from the root and remains
unbranched is the basal taxon

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Cladograms
● Synapomorphy: a derived character shared by
clade members
○ Derived characteristic: similarity inherited from
the most recent common ancestor of an entire
group
○ Ancestral characteristic: similarity that arose
prior to the common ancestor

© Getting Down with Science


Cladograms
● Many cladograms and trees include an outgroup
○ A lineage that is the least closely related to the
rest of the organisms

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Groups
● Monophyletic group: includes
the most recent common
ancestor of the group and all of
its descendants (clade)
● Paraphyletic group: includes
the most recent common
ancestor of the group, but not all
its descendants
● Polyphyletic group: does not
include the most recent common
ancestor of all members of the
group
© Getting Down with Science
Parsimony
● If there are conflicts among characters, use the
principle of parsimony
○ Use the hypothesis that requires the fewest
assumptions (DNA changes)

© Getting Down with Science


Practice Time
1. What is the common ancestor for butterflies, moths,
and flies (A, B, or C)
a. Answer: C
2. What is the basal taxon?
a. Answer: beetles
3. What is an example of a sister taxa?
a. Answer: butterflies, moths, and flies

© Getting Down with Science


Practice Time
4. Examine the data table below. (+) represents the
presence of a trait. (-) represents the absence of a trait.
Create a cladogram that would best represent the data.

© Getting Down with Science


Practice Time
5. Examine the data table below. (+) represents the
presence of a trait. (-) represents the absence of a trait.
Create a cladogram that would best represent the data

© Getting Down with Science


Practice Time
6. Examine the data table below. (+) represents the
presence of a trait. (-) represents the absence of a trait.
Which cladogram best represents the data.

© Getting Down with Science

Common questions

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Homologous structures, which are anatomical features in different species inherited from a common ancestor, support hypotheses of common ancestry by demonstrating evolutionary relationships. These structures provide a basis for evolutionary linkage and help reconstruct phylogenetic trees and cladograms .

Phylogenetic trees not only represent the evolutionary relationships among organisms but also the amount of evolutionary change over time, measured by data such as fossil records. In contrast, cladograms show evolutionary relationships based on shared derived characteristics but do not indicate the timeline or the amount of change .

An outgroup is included to provide a point of reference for comparison with the ingroup. It serves to root the cladogram, helping to infer the direction of evolutionary changes by showing traits that were present before the divergence of the ingroup .

Synapomorphies, or shared derived characteristics, are crucial in identifying clades within a cladogram, as they represent traits inherited from the most recent common ancestor unique to that group, distinguishing the clade from others .

Scientists use fossil records, DNA sequences, protein data, and homologous structures to construct and validate phylogenetic trees, ensuring accurate representation of evolutionary relationships .

DNA and protein data provide detailed and quantifiable genetic information that can be compared across different species, allowing for more precise mapping of evolutionary relationships. This molecular data helps resolve ambiguities that may not be clear from morphological data alone, leading to more accurate and robust phylogenetic trees .

Sister taxa are two clades that emerge from the same node, representing species that are each other's closest relatives. A basal taxon is a lineage that diverged from the root and remains unbranched, often depicted at the bottom or base of the cladogram, showing a divergence early in the group's history .

A monophyletic group includes the most recent common ancestor and all its descendants, forming a complete clade. A paraphyletic group contains the common ancestor and some, but not all, descendants. A polyphyletic group does not include the most recent common ancestor of all its members, often grouping species with similar traits but different evolutionary backgrounds .

A characteristic is considered derived if it is a similarity inherited from the most recent common ancestor of an entire group and is unique to that group, distinguishing it from members with ancestral characteristics that arose before the common ancestor .

The principle of parsimony involves selecting the hypothesis that requires the fewest assumptions, such as the least number of DNA changes, when constructing phylogenetic trees. By doing so, it aims to provide the simplest and most likely explanation of the evolutionary history .

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