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Organic Compounds Structure Elucidation Guide

This document outlines a tutorial class focused on the structure elucidation of small organic compounds using techniques such as IR, MS, and NMR. It includes a series of problems related to molecular ions, mass spectra, IR absorptions, and NMR signals for various organic compounds. The course is part of an organic chemistry curriculum for the academic year 2025-2026, taught by Dr. Nguyen Phuong Nhung.

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Quân Phan
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0% found this document useful (0 votes)
10 views7 pages

Organic Compounds Structure Elucidation Guide

This document outlines a tutorial class focused on the structure elucidation of small organic compounds using techniques such as IR, MS, and NMR. It includes a series of problems related to molecular ions, mass spectra, IR absorptions, and NMR signals for various organic compounds. The course is part of an organic chemistry curriculum for the academic year 2025-2026, taught by Dr. Nguyen Phuong Nhung.

Uploaded by

Quân Phan
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as DOCX, PDF, TXT or read online on Scribd

TUTORIAL CLASS 2

TOPIC: Structure elucidation of small organic compounds by IR, MS, NMR

Problem 1. What molecular ion is expected for each compound?

Problem 2. Which compound gives a molecular ion at m/z = 122:

Problem 3. Match each structure to its mass spectrum.

Problem 4. Primary (1°) alcohols often show a peak in their mass spectra
at m/z = 31. Suggest a structure for this fragment.

Problem 5. What are the major IR absorptions in the functional group


region for each compound?

Course: Organic chemistry 2 1 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
Problem 6. Given the MS and IR spectra of an unknown compound X.

a. From MS spectra:

- what information can be obtained from molecular ion m/z =88?

- how can you explain the signal with m/z = 89?

- what is the name of the signal with m/z = 57?

- Assume X contains the elements C, H, and O, predict the molecular


formula of X

b. From IR spectra:

- list the major bands and describe the shape as well as the intensity of
these bands

- predict the functional groups of X based on major IR bands

- Which of the following possible structures for X can be excluded on the


basis of its IR spectrum:

- predict the constitutional formula of X

Course: Organic chemistry 2 2 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
2900 – 3000 cm-1: medium, narrow (doublet  some groups)  C-H
alkane (many)

2700 – 2800 cm-1: weak, narrow (singlet)  C-H alkane/ C-H aldehyde

1700 – 1800 cm-1: strong, narrow (singlet) 1 C=O

1200 cm-1: strong, narrow (doublet): C-O


Course: Organic chemistry 2 3 | Page
Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
Problem 7. Propose structures consistent with each set of data:

(a) a hydrocarbon with a molecular ion at m/z = 68 and IR absorptions at


3310, 3000–2850, 2120 cm–1

(b) a compound containing C, H, and O with a molecular ion at m/z = 60


and IR absorptions at 3600–3200 and 3000–2850 cm–1

Problem 8. Match each compound to its IR spectrum.

Course: Organic chemistry 2 4 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
Problem 9. Propose possible structures consistent with each set of data.
Assume each compound has an sp3 hybridized C – H absorption in its IR
spectrum, and that other major IR absorptions above 1500 cm –1 are listed.

a. A compound having a molecular ion at 72 and an absorption in its IR


spectrum at 1725 cm–1.

b. A compound having a molecular ion at 55 and an absorption in its IR


spectrum at ~2250 cm–1

c. A compound having a molecular ion of 74 and an absorption in its IR


spectrum at 3600–3200 cm–1

Problem 10. A chiral hydrocarbon X exhibits a molecular ion at 82 in its


mass spectrum. The IR spectrum of X shows peaks at 3300, 3000–2850,
and 2250 cm–1. Propose a structure for X.

Problem 11. How many different types of protons are present in each
compound?

Problem 12. How many 1H NMR signals does each compound give?

Course: Organic chemistry 2 5 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
Problem 13. Which of the indicated protons in each pair absorbs farther
downfield?

Problem 14. A compound of molecular formula C6H10 gives three signals


in its 1H NMR spectrum with the following integration units: 13, 33, 73
units. How many protons are responsible for each signal?

Problem 15. Which compounds give one singlet in the 1H NMR


spectrum?

Problem 16. Into how many peaks will the signal for each of the
indicated protons be split?

Problem 17. How many 13C NMR signals does each compound exhibit?

Course: Organic chemistry 2 6 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS
Problem 18. Identify the carbon atoms that give rise to the signals in the
13C NMR spectrum of each compound.

Problem 19. Propose a structure consistent with each set of


spectral data:

Course: Organic chemistry 2 7 | Page


Academic year: 2025 – 2026
Lecturer: Dr. Nguyen Phuong
Nhung /LS

Common questions

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To propose a constitutional formula, first use IR to identify functional groups, noting specific absorption bands (e.g., OH stretches, C=O stretches). Assess the NMR spectrum to determine the number and types of protons (via chemical shift, multiplicity, and integration data). Combining data, infer possible molecular frameworks. Confirm these by correlating functional group data (from IR) with the proton environment data (from NMR) to construct a plausible structure, ensuring consistency with the molecular weight derived from m/z values .

In mass spectrometry, primary alcohols often exhibit a peak at m/z = 31 due to the ionization of the hydroxyl group, resulting in a primary alkyl ion. This information suggests the presence of a CH2OH fragment within the structure .

The molecular ion at m/z = 88 suggests that the molecular weight of the compound is 88. This value helps infer possible molecular formulas based on the elements present. Since the compound contains C, H, and O, potential formulas could include C4H8O2, given that the combined atomic weights sum to 88 . Further analysis of IR spectra would help confirm the depicted elements.

A weak, narrow singlet at 2700–2800 cm−1 suggests the presence of an aldehyde C-H stretch. This singlet typically accompanies a stronger C=O stretch around 1720 cm–1, revealing that the compound likely contains an aldehyde functional group .

The IR absorption at 3600–3200 cm–1 indicates the presence of an O-H group (alcohol), and 3000–2850 cm–1 suggests C-H stretching in an alkane. The molecular ion at m/z = 60 could suggest the possible compound of ethanol (C2H6O), which aligns with the presence of these functional groups .

In NMR spectroscopy, the integration units of signals correlate directly to the number of protons contributing to each signal. For a compound C6H10, if integration units are 13, 33, and 73, then these numbers are proportional to the relative proton count per environment in the molecule, allowing us to deduce the distribution of protons .

The band at 1700-1800 cm−1 indicates a C=O stretch, suggesting the presence of either a carbonyl group such as ketones, aldehydes, or acids. The band at 1200 cm−1 signifies C-O stretching, potentially indicative of an ester or acid group. Together, these bands suggest potential ester or carboxylic acid structures .

The molecular ion at m/z = 82 combined with IR peaks at 3300 cm–1 indicates N-H stretching (likely an amine), 3000–2850 cm–1 suggests C-H stretching (alkane), and 2250 cm–1 suggests a C≡C or C≡N group. These features could be indicative of a nitrile-containing compound such as 2-aminobutanenitrile .

The splitting pattern reflects the number of neighboring protons through the n+1 rule where n is the number of adjacent protons. This allows detection of multiplicity in the signal, revealing information about the proximity of protons, and potentially indicating branching and connectivity in the molecule .

Specific IR absorption bands reveal functional groups present in a compound. If certain absorptions are inconsistent with known functional groups of potential structures, those structures can be excluded. For example, absence of O-H or C=O bands can rule out alcohols and carbonyl compounds from the list of candidates .

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