Understanding Cellular Respiration Processes
Understanding Cellular Respiration Processes
Respiration is a process of oxidation of food (substrate) in living cells bringing about the release
of energy for the maintenance and development of the living organism.
C6H12O6 +6O2 6CO2 + 686,000 cal. Energy
The chemical energy released is used basically for types of work done by living organism: 1.
1. Chemical Work: Done by all cells to maintain themselves during active growth. For
biosynthesis of proteins, lipids, nucleic acids and polysaccharides and for synthesis of
new protoplasm.
2. Osmotic work: Done to absorb, accumulate and transport essential mineral salts and
organic solutes from the environment. Conversely unwanted and poisonous substances
are removed from cells into the environment. Energy is also used for active transport of
ions and molecules across membranes.
3. Mechanical work: Done during cytoplasmic streaming and contraction of skeletal
muscles, cilia, and flagella in motile cells. In motile organisms, much energy us used for
locomotion.
The usual substrate for respiration is glucose and its complete oxidation involves three distinct
processes. The first, glycolysis is a series of reactions called Embden-Meyerhoff-Parnass (EMP)
pathway (in remembrance of the scientists who first discovered the pathway). The EMP pathway
converts a molecule of hexose to 2 molecules of pyruvic acid. In the second main process, called
Kreb cycle or Tricarboxylic acid or Citric acid, the two molecules of pyruvic acid are then
decarboxylated and the remaining two-carbon fragments are completely oxidized. The third
process is the electron transport chain which occurs in mitochondria along with Krebs cycle.
Mitochondrion
A mitochondrion (plural, mitochondria) is similar to chloroplast although functionally they are
quite different. It deserves a special mention because it is a self-contained chemical factory. Each
mitochondrion is formed mainly by division of a pre-existing organelle and it contains genetic
information in its DNA to produce a small percentage of its enzymes. Each mitochgondrion is
surrounded by two membranes, the inner one convoluted inwardly into folds called cristae
(singular, crita) (Fig 5.1). Within the innermost compartment surrounding the cristae, is a dense
solution containing enzymes, coenzymes, water, phosphates, and other molecular compounds
involved in respiration. The outer membranes allows most small molecules to move in or out
freely but the inner one only permits the passage of specific molecules to move in or out freely
but the inner one only permits the passage of specific molecules such as pyruvate and ATP. The
enzymes of the krebs cycle are found in the protein-rich matrix between the cristae. The enzymes
and other components of the electron transport chain are built into the surfaces of the cristae.
Glycolysis is the first part of respiration. It involves the breaking down of organic matter, the
hexoes sugar, into smaller 3-cabon compound-pynuvate. Assume glucose as the initial substrate,
glycolysios proceeds through a number of phosphorylation and oxidation reaction to form
pyruvate. At the beginning of glycolysis, the glucose is energized by ATO to form glucose-6-
phosphate under the influence of the enzyme glucokinase. Under the influence of
phisphohexoisomerase, the glucose-6-phosphate Isomerises to fructose-6-phosphate which
becomes energized by ATP to form fructose-1, 6-diphosphate. This hexose diphoshate. Each of
these triose molecule can isomerise into the other under the influence of the enzyme triose
phosphate isomerae. These triose phosphates will undergo dehydrogenetation reaction to form
phosphoglyceric acid using orthophosphate as the phosphate donor. Subsequently, this
diphosphoglyceric acid loses a phosphate molecule to ADP in a kinase reaction to form ATP and
3-phosphoglyceric acid. The 3- phosphoglyceric acid latter undergo a mutase reaction during
which the phosphate group changes position to form 2- phosphoglyceric acid (2-PGA). Finally
the 2-PGA undergoes dehydration to form phosphoenolpyruvate which forms pyruvate o
dephosphorylatiob. The formation of ATP that is phosphorylation during glycolysis is known as
substrate phosporylatiob.
Decarboxylation
Gloycolysis ends with formation of pyruvate. During the oxidative decarboxylation, the pyruvate
is decarboxylated to acetate thereby releasing carbon dioxide. The acetate formed undergoes a
reaction with coenzyme A to form Acetyl CoA, which on condensation forms citric acid which is
a tricarboxylic acid.
Krebs cycle
The condensation of acetate with oxaloacetate results in the formation of citrate which
isomerized into isocitrate. On decarboxylation, isocitrate is reduced to a five-carbon compound,
ά-Ketogutarate. This five-carbon compound undergoes dehydrogenation and decarboxylation
reaction to form succinate which on dehydrogenation forms fumarate. Fumarate then picks up
molecule of water to form malate which is dehydrogenated into oxalocatate and the cycle
continues. Sometimes, the formation of ά-Ketoglutarate may be by-passed.
When this happens, isocitrate loses a two-carbon compound, glyoxylate, resulting in the
formation of sussinate. Two molecules of glyoxylate may condense into a four-carbon
compound, malate, to continue the cycle.
Electron Transport Chain and Oxidative Phosphoryylation
Electron transport chanin occurs in mitochondria, some details in the system have to be excluded
to avoid confusion in the presentation. The electron transport is operated by electron carriers as
shown in Fig. 5.4
Nicotinamide adenine dinucleotide (NAD) accepts H+ from Krebs cycle and it becomes reduced
to NADH2. The two electrons and two H+ are passed on to flavin mononucleotide (FMN) and
electrons and the H+ to ubiquinone and then to cytochrome. There may be three to seven
cytochromes in the system and the final one transfer two H+ and the pair of electrons to an atom
of O2, producing water. According to chemiosmotic hyposthesis, protons are pumped out of the
mitochondrial matrix as electrons are passed down the electron transport chain, which forms part
of the inner mitochondrial membrane (see fig. 5.1). The movement of protons down the
electrochemical gradient as they pass through the ATP is synthesized from ADP and phosphate.
Each time one pair of electron passes from NADH2 to O2 three molecules of ATP are formed.
Each time a pair of electron passes from FADH2, which is at a slightly lower energy level than
NADH2, two molecules of ATP are formed.
When electron are passed ‘downhill’ to O2 as in electron transport chain, and the energy released
is used from ATP from ADP, the process is referred to as oxidative phosphorylation.
Energy Yield from Glycolysis and Krebs Cycle:
Glycolysis 2ATP
2NADH2 4ATP = 6ATP
Pyruvate
Acetyl CoA 1NADH2 3ATP X2 = 6ATP
Krebs cycle 1ATP
3NADH2 9ATP x2 = 24ATP
1FADH2 2ATP 36ATP
From the 2NADH2 under glycolysis, 6 molecules of ATP should have been obtained, only 4
molecules were recorded. This is due to the fact that 2 molecules of ATP were used to transport
electrons held by the 2 molecules of NADPH2 across the mitochrondrial membrane. For pyruvate
and Krebs cycle, the figures were multiplied by two because for each molecule of glucose, two
molecules of pyruvate would be obtained. Therefore, the reactions from pyruvate would occur
twice for one molecule of glucose.
Fermentation
Plants carry out fermentation (anaerobic respiration) when O2 starts limiting. Under this
condition, NADH and pyruvate start accumulating, forming mostly ethanol or some lactic acid.
The acetaldehyde and ethanol reactions are respectively catalyzed by pyruic acid decarboxylase
and alcohol dehydrof\genase while lactic acid formation is catalyzed by lactic acid
dehydrogenase. In the production of both fermentation products (ethanol and lactic acid) NADH
is the reductant but only under anaerobic conditions is NADH abundant enough to cause
reduction. Accumulation of lactic acid in muscles of animals causes ‘stiffness’ after exercise of
muscles that are insufficiently conditioned.
Glycoylate Cycle
The glyoxylate cycle is a modification of the Krebs cycle and it occurs when fats are used as
substrate for respiration instead of glucose. Fats are broken down to two-carbon units as acetyl
CoA which then becomes available as the energy source. In the glyoylate cycle, isocritrate is
split to yield one molecule of succinate and one molecule of glyoxylate by the enzyme called
isocitratelyase (fig. 5.6). The glyoxylate condenses with another molecule of acety CoA to make
a molecule of malate under the influence of the second unique enzyme referred to as malate
synthetase. Both succinate and malate can now enter the Krebs cycle and be converted to
exalocacetate. The glyoxylate cycle occurs in plants, yeasts and some bacteria, but not in
animals. This cycle occurs in plants microbodies called glyoxysome which are the sites of fatty
acid breakdown. The Glyoxylate cycle is referred to as an anapleurotic pathway, anapleurotic in
the sense that it serves to replenish the intermediates of other pathways. The glyoxylate cycle in
this case serves to provide four-carbon acids to replenish the Krebs cycle.
In the case of complete oxidation of reduced such as proteins and fat, the RQ is less than 1.0.
oxidation of tripalmitin (a common fat) for example gives an RQ of 0.7.
RQ 51CO2/72.5O2 = 0.7
In plant such as the succulents which oxidize organic acids ths RQ may be considerably more
than 1. For oxalic acid it would be
Cellular Respiration…… Prof Gbolagade Segun Jonathan
Cellular respiration is the process by which organic compounds (preferably glucose) are broken
apart, releasing energy that is used to produce ATP molecules. Cells need to have ATP because
it’s the gasoline that powers all living things. ATP is a high energy nucleotide which acts as an
instant source of energy within the cell.
Cellular respiration is like a change machine: you’re turning sugars into ATP so it will be a
usable form of energy. If you go to a coin operated laundromat, they all seem to run on quarters
for some reason. So you might say, “I don’t have any quarters but I want to wash my clothes and
I have a $10 bill.” You put your $10 bill into the change machine and you get 40 quarters and
now you could use the coin operated washers and dryers. All the chemical reactions in living
things run off of these quarters (ATP). They don’t run off $10 bills (sugars/fats/proteins).
One glucose will give you as much as 38 ATP, similar to the way a $10 bill will give you 40
quarters. A fat molecule is more like a $100 bill because it has that much more energy.
Since ATP is found in all living things it’s sometimes called the energy currency of cells, which
goes well with this laundromat analogy.
C6H12O6 + 6O2 —– enzymes & coenzymes ——> 6CO2 + 6H2O + Release of Energy (≤38
ATP) + Heat
In order to make ATP, you need food (sugar) and oxygen. If you don’t have food, you can’t
make ATP and you’re going to die. Even if I brought in all the food in the world and then I
diabolically suck all the oxygen out of this room, you’re still going to die. You need oxygen to
unlock the energy that’s in the food. Cellular respiration also explains why we are breathing
oxygen and why we exhale carbon dioxide.
In essence, the energy that was in covalent bonds of the glucose molecule is being released. In
actuality, this process requires several steps because the sugar is broken down by baby steps,
little by little, and is catalyzed many enzymes and coenzymes.
Nothing is perfectly efficient in this world. Even your car engine is only about 25% efficient at
best. Only about 25% of the burned gasoline goes toward moving your car while the other 75%
is given off as heat which is why your engine and exhaust systems are very, very hot.
Some nifty numbers here: There’s 686kcal (686,000 calories) in a mole of glucose. The actual
usable energy obtainable from the 38 ATP molecules that may be produced from this glucose is
288,800 calories (38 x 7,600 calories per ATP). Therefore, the complete oxidation of glucose is
only about 40% efficient (288/686). The other 60% goes off as heat. It’s impossible to convert
one form of energy into another without creating heat. This release of heat is predicted by the
law of thermodynamics. In other words, approximately 40% of the energy that’s created is used
to phosphorylate ADP into ATP.
Furthermore, this reaction explains why the temperature of your body is almost 100°F. If you
start to exercise, cellular respiration starts to speed up inside your muscle cells to produce more
ATP, so your body starts breaking down sugars at a faster rate, you breathe oxygen at a faster
rate and exhale carbon dioxide at a faster rate and give off a lot more heat at the same time.
What living things do is they take oxygen and transfer the hydrogens that come off of sugar
molecules and stick them onto oxygen. When you attach a couple hydrogens onto an oxygen,
you get water. For this reason, it is said that oxygen is a hydrogen acceptor.
We breathe in oxygen to remove the hydrogens off the sugars and fats otherwise the extra [H+]
will cause the acidity to increase and proteins will unravel (denature) and die. Remember, an
acidic solution is one that has more hydrogen ions (H+) than hydroxide ions (OH–).
Oxidation: The glucose is being oxidized into carbon dioxide. OIL: Oxidation Is a Loss (of H+
and e–)
Reduction: Oxygen is reduced into water. RIG: Reduction Is a Gain (of H+ and e–)
One of the coenzymes that helps cellular respiration is NAD+, which contains the B Vitamin,
Niacin.
Now that we’ve described the big picture and we understand that sugars are the principle form of
food used to create ATP, now we could understand why having a healthy blood sugar level is so
important. So let’s go off on a slight tangent and explain how the sugar levels in our blood
remain constant before diving fully into cellular respiration.
Next post in the series: How are glucose levels regulated in the blood stream?
Mitochondria……………..
Mitochondria
Heart mitochondria
Mitochondria Function
Energy production
o Respiratory chain
Signaling
Apoptosis role
o Programmed cell death
Mitochondria Structure
Mitochondrial membraneous compartments
Double membrane
outer membrane
intermembrane space
inner membrane
crista (plural, cristae)
o originally considered specialized folds of the inner membrane
o variable invaginations with narrow tubular connections to each other and by crista
junctions to the peripheral region of inner membrane
matrix
Mitochondria Shape
Mitochondria Location
Maternal Inheritance
Most animals
Oocyte mitochondria (maternal) are the only mitochondria inherited. (see genetics below)
o maternal mitochondrial genome inheritance.
Spermatozoa mitochondria (paternal) can enter oocyte at fertilisation.
o Male spermatozoa are destroyed early in embryonic development (mechanism not
yet elucidated)
o worm - (C. elegans) suggest ubiquitination occurs followed by autophagy. PMID
24528894
o mouse - suggest a more passive process, prefertilization sperm mtDNA
elimination and uneven mitochondrial distribution in embryos. PMID 23878233
Recent experiments using swapping maternal mitochondrial DNA in mammalian oocytes
Outer Membrane
porin - membrane channel, allows ions and metabolites into the mitochondria (<5000
daltons)
Intermembrane Space
Inner Membrane
Cristae
metabolic enzymes of citric acid cycle (=Krebs) (100s of enzymes) (MH- do not need to
know biochemical details of this cycle)
genetic material DNA, tRNA, ribosomes
Mitochondria DNA
Mitochondrial targeting signal (MTS) - alternating amino acid pattern (amphipathic helix) with
a few hydrophobic amino acids and a few plus-charged amino acids at the N terminus.
Mitochondria Fission
Mitochondrial
Division
Divide
independently of the
whole cell cycle
Generated by
existing
mitochondria
inward furrowing
like bacterial
division
o mitochondria
lack FtsZ
ring (seen in
bacteria)
o rely on
dynamin on
Blocking mitochondrial fission
the cytosolic
causes autophagy
face for
fission
Mitochondrial fission
Mitochondrial Fusion
Energy Production
Raw Materials
o Oxygen
o Pyruvate & Fatty Acids
Products
o Carbon Dioxide
o Adenosine Triphosphate (ATP)
Steroid Synthesis
adrenal glands and gonads/ovaries - Steroid hormones required for carbohydrate metabolism,
stress management, and reproduction and are synthesized from cholesterol in mitochondria of
these tissues. PMID 25505173
Mitophagy
Apoptosis
Mitochondrial morphologies during apoptosis
Cells are the basic unit of structure in all organisms and also the
basic unit of reproduction.
This came from the Latin word Cella, meaning ‘a small room’
like monks lived in and also Cellulae, which meant the six sided
cell of a honeycomb.
What Hooke had thought were cells, were actually empty cell
walls of plant tissues.
With microscopes during this time having a low magnification, Hooke was
unable to see that there were other internal components to the cells he was
observing.
Therefore, he did not think the "cellulae" were alive.[9] His cell observations
gave no indication of the nucleus and other organelles found in most living
cells.
Since this was an old Aristotelian theory still accepted at the time, others
did not reject it and was not disproved until Leeuwenhoek later discovers
generation is achieved otherwise.
Credit for developing cell theory is usually given to two scientists:
In 1839, Schleiden suggested that every structural part of a plant was made up of
cells or the result of cells.
He also suggested that cells were made by a crystallization process either within
other cells or from the outside.
However, this was not an original idea of Schleiden.
The cell is the fundamental unit of structure and function in all living organisms.]
Cells contain DNA which is found specifically in the chromosome and RNA found in the cell
nucleus and cytoplasm.
All cells are basically the same in chemical composition in organisms of similar species .
Modern version
The modern version of the cell theory includes the ideas that:
Energy flow occurs within cells.[20]
Heredity information (DNA) is passed on from cell to cell.[20]
All cells have the same basic chemical composition.[20]
Eukaryotic Cell vs. Prokaryotic Cell
The distinction between prokaryotes and eukaryotes is
considered to be the most important distinction among
groups of organisms.
The cytoplasm supports cell organelles and also prevents the cell from bursting or
shrinking.
The nucleus directs all the activities of the cell and also help in protein formation.
The vital function of a nucleus is to store DNA or hereditary material which include cell
division, metabolism, and growth.
Plant cells have large membrane bound chamber called vacuole. Its main function is
storage.
They are membrane bound organelles, they perform functions of secretion, excretion
and storage.
Microfilaments: Microfialments are solid rod like structures whose primary function
is structural support.
Plastids: Plastids are storage organelles.
They store products like starch for synthesis of fatty acids and
terpenes.
Ribosomes: Ribosomes are smallest and the most abundant cell organelle.
It comprises of RNA and protein. Ribosomes are sites for protein synthesis.
They are found in all cells because protein are necessary for the survival of
the cell.
They are described as the 'power plants' of the cell as they convert
glucose to energy molecules (ATP).
Lysosome: Lysosome contain digestive enzymes. They digest excess or worn out
organelles, food particles and any foreign bodies.
This is also why you get thirsty after eating something salty.
Type of Solutions
Isotonic Solutions
If the concentration of solute (salt) is equal on both sides, the water will move back
in forth but it won't have any result on the overall amount of water on either side.
Hypotonic Solutions
The word "HYPO" means less, in this case there are less solute (salt) molecules
outside the cell, since salt sucks, water will move into the cell.
The cell will gain water and grow larger. In plant cells, the central vacuoles will fill and
the plant becomes stiff and rigid, the cell wall keeps the plant from bursting
Hypertonic Solutions
The word "HYPER" means more, in this case there are more solute (salt) molecules
outside the cell, which causes the water to be sucked in that direction.
In plant cells, the central vacuole loses water and the cells shrink, causing wilting,
the cell may die.
This is why it is dangerous to drink sea water - its a myth that drinking sea water will
cause you to go insane, but people marooned at sea will speed up dehydration (and
death) by drinking sea water.
PHOTOSYNTHESIS
Continuous growth and expansion of plant cells and plant as a whole
depends on the relative ability of the photosynthetic tissues (leaves) to
synthesize food which are made available to other various plant parts and
other nonphotosynthetic organisms (heterotrophs).
This process can only occur in illuminated green tissues, because it is only the
chlorophyll molecules of these tissues that can trap the solar energy.
They rather use some chemical compounds such as Hydrogen sulphide and other
iron containing compounds as source of the primary energy.
These problems are photorespiration and excessive los of water both in the tropics and arid
areas.
Photorespiration arises from 02 competing with CO2 with the active sites of RUBisCO
and thereby preventing CO2 fixation.
CAM plants have a different leaf anatomy from C3 plants, and fix
the CO2 at night, when their stomata are open.
CAM plants store the CO2 mostly in the form of malic acid via
carboxylation of phosphoenolpyruvate to oxaloacetate, which is
then reduced to malate.
Water is passively transported into the roots and then into the xylem.
Water moves from the xylem into the mesophyll cells, evaporates
from their surfaces and leaves the plant by diffusion through the
stomata.
Water is necessary for plants but only a small amount of water taken up by the
roots is used for growth and metabolism.
The stomata are bordered by guard cells and their stomatal accessory cells (together
known as stomatal complex) that open and close the pore.[
This creates a concentration gradient between the moist mesaophyll cells and the dry
external atmosphere.
This now causes diffusion of water molecules from the leaf mesophyll cells to the
environment.
Plants regulate the rate of transpiration by controlling the size of the stomatal apertures.
The rate of transpiration is also influenced by the evaporative demand of the atmosphere
surrounding the leaf such as boundary layer conductance, humidity, temperature, wind and
incident sunlight.
Soil water supply and soil temperature can influence stomatal opening, and thus transpiration
rate.
The amount of water lost by a plant also depends on its size and the amount of water
absorbed at the roots.
Transpiration accounts for most of the water loss by a plant by the leaves and young stems.
Transpiration is basically an evaporation process.
As long as there is entry and exit of gases the condition leading to loss of water will
be unavoidable.
If transpiration rate exceeds water absorption rate, the plant may die.
Two major factors influence the rate of water flow from the soil to the roots: the
hydraulic conductivity of the soil and the magnitude of the pressure gradient
through the soil.
Both of these factors influence the rate of bulk flow of water moving from the roots
to the stomatal pores in the leaves.
Water moves from the xylem into the mesophyll cells, evaporates from their surfaces and
leaves the plant by diffusion through the stomata.
Transpiration does not occur only through the stomata. It may also occurs through other plant
parts such as lenticels and cuticle.
Cuticle is a layer of wax-like substance covering the leaf epidermis. It is a tough layer meant to
prevent transpiration.
Stomata are openings on the leaf surfaces. .The close and open rhythmically
as controlled by guard cells.
The los of water through stomata amounts to about 80-90% of the total
water loss, because cuticle restricts water diffusion out of the mesophyll
cells.
2. Diffusion of this water vapour into the atmosphere through the stomata
These two stages follow closely the leaf-air vapour pressure deficit.
• (1) They are classified according to the number of carbons they contain:
3 carbon sugars = Trioses e.g. glyceraldehyde and dihydroxyacetone
O
||
C–H CH2OH
• | |
• CHOH C=O
• | |
• CH2OH CH2OH
•
• GAL DHA
CONTD.
• 4 carbon sugars = Tetroses – e.g. erythrose
• 5 carbon sugars = Pentoses – e.g. ribose, xylose
• 6 carbon sugars = Hexoses e.g. glucose, fructose, galactose
• 7 carbon sugars = Heptoses e.g. heptulose, sedoheptulose.
• (i) These are esters of fatty acids and alcohols (not glycerol
but straight chain, having 24 – 36 carbon atoms and only one
OH).
• (ii) Waxes have higher melting points fats.
• (iii) They are constituents – which covers the epidermis,
stems and leaves and suberin, the water proofing material of
the cork cell walls.
• (iv) Plant waxes are used in making the more expensive and
better grades of polishes for shoes, floors and automobiles.
Compound Lipids
cleverage
H2C ⎯ OH
|
H ⎯ C ⎯ OH
|
H2C ⎯ OH
Trihydric alcohol
(glycerol)
PHYTOHORMONES OR GROWTH REGULATORS
• Plant hormones are organic compounds produced by the plant itself,
which although present in minute amounts regulate physiological
processes and as a rule, migrate in plants.
• Growth regulating substances
• Auxins
• Gibberellins Florigen
• Cytokinins
• Abscisic acid
• Ethylene
PHYTOHORMONES
Phyllody on a purple
coneflower (Echinacea
purpurea), a plant
development abnormality
where leaf-like structures
replace flower organs. It
can be caused by
hormonal imbalance,
among other reasons.
• Plant hormones can be classified into:
• (a) Growth Promoters
• (b) Growth Inhibitors
• Growth Promoters: Auxins, gibberellins, cytokinins, ethylene (exists
as gas).
• Growth Inhibitors: Abscisic acid (ABA)
AUXINS
• The word Auxin is derived from a Greek word Auxion – ‘to grow’.
• Natural auxin can be defined as indole compounds of which the
principal auxin is called Indole (Acetic acid CIAA) or Indole III acetic
acid. Other natural auxins are indole acetic nitrile and indole ethanol.
The auxin indole-3-acetic acid
Synthetic Auxins
Cl
2,4-D NAA
Cl IBA
Role of Auxins
• The cause of dormancy may lie within its plant organ/tissues. Hence, this
dormancy is termed Innate or Spontaneous Dormancy, and could occur
during favourable environmental conditions.
Terminating of Bud Dormancy
• Several mechanisms appear to act alone or synergistically in release ng
buds from dormancy.
Chilling/Cold Treatment:
• About the most important. Many trees require an exposure 250 to 1000h
of chilling before dormancy can be broken. During chilling (0-10oC)
adequate aeration is required.
• Stratification: Mixing of seeds with sand, peat or other media and storing at
low temps. (to insure optimum conditions such as moisture, O2 and temp).
• Conifers: 5o – 10oC for 2 – 3 months. Clutching in conjunction with moisture
can shorten after – ripening effects.
Light
• The primary effect of light on seed germination is mediated
by phytochrome, a proteinaceous pigment containing a
chromophore molecule. Phytochrome is energized by red
light (660nm) to a chemically active form which on reacting
with a substance “X” induces physiological response that
leads to germination.
• Active phytochrome is disintegrated and/or
reconverted into the original inactive form if unused.
When irradiated with red light, phytochrome will be
predominantly in Pfr form (i.e. 81% Pfr and 19% Pr.
Hence for germination to take place light should be
adequate to produce the appropriate Pfr to Pr ratio.
• Pressures
increases by 50 – 200%
ENZYMES
product of a reaxn.
factors.
action site. An enzyme may have more than one active site.
Without enzyme
With enzyme
C+D
Product
DG
energy required so that more molecules can attain higher activation energy.
Classification of Enzymes
(1) The first classification is based on the substrate used for the experiment. At the end of the
substrate used for the experiment. At the end of the substrate, - ase is added e.g. enzymes
Protein → protease
Lipids → lipase
Sucrose → sucrose
(2) Another one is based on the type of chemical reaxn. Catalyzed by the enzyme e.g. enzymes
(1) Specificity of enzyme can only catalyze one reaxn and sometimes can only act on a
Urease can only act on urea because only the configuration of urea fits the active site of
urease.
(2) Temperature: At low temperature, the rate of the reaxn. is very low. As temperature
increases, the rate of reaxn. increases until optimum temperature is reached. Up to the
optimum temperature, the rate of reaxn increases 2 – 3 times to every 10oC. This rate is
called Q10X. After the optimum temperature, the rate of reaxn. decreases. At about 90 –
Deactivation of the enzymes at high temperature is the distortions of the bond that stabilizes
the enzymes.
Optimum temperature
Denaturation (inactivated)
Rate
(1/t)
Increase temperature
(3) pH effect the enzyme has a major pH range at which it works. The effect of pH on enzyme
Optimum pH
Denaturation
pH
If the medium is too acidic or too alkaline, the enzyme will be denatured
(4) Substrate concentration – At very low substrate concentration, the rate of reaction increase
linearly. At very high substrate concentration, there is no further increase in the rate of
reaction because there are no more enzyme molecules to react with the substrate molecule.
The end product of the reaxn accumulates such that the forward reaxn. is inhibited.
Plateau
Substrate concn.
low high
ENZYME INHIBITION
competitive.
succinic dehydrogenase.
COOH COOH COOH
CH2 -2H CH CH2 malonic
CH2 +2H CH2 COOH acid
Succinic
COOH dehydrogenase COOH
Succinic fumaric
Acid Acid
substrate is distorted.
(oxidase).
ACTIVATION OF ENZYMES
GENETICS
GENETICS
• Genetics is the branch of biology concerned with the
origin of biological variation, organization of these
variations and how they are passed down from one
generation to another.
• Genetics is the study of heredity and variations
• Heredity deals with inheritance, while variability is a
major attribute of nature.
• Genes are the units of inheritance
GENETICS (Contd)
Heritable variation
• Heritable variations genetically induced variations
that can be passed from one generation to the other.
• These variations are passed down through the germ
lines such as; sperms, pollens and eggs
• or passed down through the soma such as; leaves,
stems and roots that occasionally serve as
reproductive units.
GENETICS (contd)
Non-heritable variation
• Non-heritable variations are environmentally induced variations
that are not transmissible from parent to offspring
• For example, a plant shaded from sunlight automatically turns
albino, but may revert to green colouration on exposure to
sunlight.
• A plant grown in poor soil becomes stunted , but may grow into
luxuriant plant of its type on good soil.
• A child who is treated with some antibiotics such as
‘’Terramycin’’ during teething period may develop coloured
teeth, but the child may grow normal teeth colour.
Mendelian Genetics
Dihybrid cross
▪ Mendel further considered two characters together;
Plant height and seed coat characters
▪ He crossed a tall, smooth seeded plant and a dwarf, wrinkled
seeded plant of the same species.
▪ TT represent tall plant
▪ tt represent dwarf plant
▪ SS represent smooth seed
▪ ss represent wrinkled seed
Mendelian Genetics (contd)
Parents are;
▪ TTSS ; tall and smooth seeded plant
▪ ttss ; dwarf and wrinkled
▪ First filial generation progeny is; TtSs
▪ Gametes obtained are TS, Ts, tS and ts
▪ Second filial generation progenies gives a ratio of 9:3:3:1.
▪ The combination of characters in second filial generation of a
dihybrid cross resulted from random combination of gametes of
first filial generation plants.
▪ Hence, when two genes are seggregating together, each does so
independent of the other.
▪ This is known as Law of independent Assortment
Cytology
Concepts of cytology
Concepts of cytology
• Cytology was derived from two Greek words ‘kytos’ (cyto) meaning
hollow vessel or cell
• ‘logos’ means study
• Therefore cytology is the study of cells
• Cytogenetics is the branch of genetics that correlates the structure,
number and behavior of chromosomes with heredity and variation
• Cell biology is the biological science which deals with the study of
structure, function, molecular organization, growth reproduction and
genetics
• A cell is a basic unit of structure, function cell and heredity in all living
things.
Concepts of cytology (contd)
• Robert Hooke discovered cell in 1665. he observed and
described some cork pieces having some compartments
in them.
• These compartments are known as cells.
• The discovery of cells which was further validated by M.J
Schleiden and Theodore Schwann (1839) led to the
formulation of ‘cell theory’ in plants and animals.
• From cell theory, cells occurred universally
• Cells are the basic unit of life in any organism
Cell Reproduction and Multiplication
• All the cells are produced by division of pre-existing cells
• Continuity of life depends on cell division
• the idea of cell reproduction and multiplication leads to the concepts of mitosis
and meiosis as naturally occurring events.
• Both events represent cell division process
• In the cell division, the division of nucleus is called karyokinesis and division of
cytoplasm is called cytokinesis.
• Therefore the cell division is of two types:
1. Mitosis ; 2. Meiosis
• Before any cell undergoes a division process, it is conditioned to a stage called
INTERPHASE
• Interphase stage is the resting stage when the cell gets itself ready for the work
to be carried out .
Cell Reproduction and Multiplication (contd)
• Two major activities that take place at the interphase stage are;
duplication of genetic materials and accumulation of energy
required for the entire process.
• Cells in interphase are characterized by deeply stained nucleus
that shows a higher definite number of nucleoli
• The chromosomes in interphase are not individually
distinguishable but appear as extremely thin coiled threads
forming a faintly staining network
• The cell is quite active metabolically during interphase
❖ MITOSIS
• The term ‘mitosis’ was coined by Flemming in 1882. it is also known
as somatic cell division because it is the basis for asexual
reproduction
• Mitosis refers to the equational or homotypic division of a matured
cell into two daughter cells.
• The daughter cells are similar to the mother or parent cell in shape,
size and chromosome number.
• Mitosis occurs in somatic organs like root tips, stem tips, leaf base
etc
• The process of mitosis consists of four stages;
1. Prophase 2. metaphase 3. anaphase 4. telophase
❑ MITOSIS (contd)
Prophase
• Chromosomes appear as thin threads, single stranded and not easily
distinguishable
• The nucleolus, nucleus and nuclear membrane diasppear
• The nucleus takes a dark colour with nuclear specific stains such as
acetocarmine, or orcein
• At the initial stages, the size of the nucleus is comparatively big and the
chromosomes are thin but slowly thicken and shorten by a specific
process of coiling
• The two chromatids of a chromosome are distinct with matrix coating
and relational coiling
• The disintegration of nuclear membrane denotes the end of prophase
❑ MITOSIS (contd)
Metaphase
• After the disintegration nuclear membrane, the chromosome
become reduced, condensed, thickened and distinguishable
• The distinct centromere of each chromosome is connected to
the pole through spindle fibers.
• The chromosomes move towards equator and centromere of
each chromosome is arranged on the equator.
• The type of orientation of centromeres on the equation is
known as auto orientation.
• The chromatids of a chromosome are held together at the
point of centromeres and the relational coils are at its
minimum.
❑ MITOSIS (contd)
Anaphase
• Characterized by vertical chromosomal division along the
centromere
• This leads to the formation of two sister chromatids
• This chromatids formed starts moving towards the opposite
poles
❑ Telophase
• Chromatids have reached the opposite poles.
• Becomes full chromosomes of their own
• Nucleolus, nucleus and nuclear membrane reappears
• Two independent daughter cells are formed known as
cytokinesis
❑ Significance of mitosis
• Production of protoplasm
• Asexual reproduction of new cells.
• Production of new tissues
• Growth and development
• Replacement of worn out tissues
• Healing of wounded parts
• Vegetative propagation e.g cassava, cocoyam etc.
Diagram of Mitotic stages
Meiosis
Meiosis
❑The life cycle of higher plants and animals is characterized by sexual
reproduction.
❑It involves the production of new individuals
❑Each gamete with (n) number of chromosome(haploid) is doubled
(diploid-2n) as a result of sexual reproduction.
❑Halving of this diploid chromosomes must be maintained for
transmission of traits from one generation to another.
❑This stage or phase is known as meiosis whereby there is reduction
division of sex cell (in a matured cell).
Meiosis (contd)
❑It results to gametogenesis, whereby there is formation of
gametes. (2n-diploid in nature. Somatic chromosomes
complement are reduced to half).
❑Two different divisions takes place in meiosis
A. Meiosis I- reduction of chromosome
B. Meiosis II- Equational division of chromosome into
daughter cells.
❑Meiosis I- is divided into four stages; prophase I, metaphase
I, anaphase I and telophase I.
Prophase I
❖Is further sub-divided into 5 sub-stages:
➢Leptotene or leptonema
➢Zygotene or zygonema
➢Pachytene or pachynema
➢Diplotene or diplonema
➢Diakinesis
Prophase I (contd)
➢Leptotene
✓Chromosomes appear as long thin threads
✓Chromosomes are not easily distinguished as separate entities.
➢Zygotene
✓attraction of chromosomes to one another as homologous partner.
✓This result into pairing of homologous chromosomes along their
longitudinal lengths known as synapsis occurs.
➢Pachytene
✓Thickening and contraction of the chromosomes becomes more
obvious.
Prophase I (contd)
✓Completion of synapsis as homologous are united along their length.
✓Each synapsed chromosome pair as bivalent of a tetrad
➢Diplotene
✓Bivalents held together at the point of exchange appears as crosses or
chiasmata occurs.
✓Each bivalent consists of four strands due to duplication of chromosomes
into two chromatids.
✓Exchange of genetic material as source of variation in sexual reproductive
organisms
✓This can lead to evolution
Prophase I (contd)
➢Diakinesis
✓Intense internal coiling of the sister chromatids results in
greater shortening and thickening of chromosomes.
✓Chromatids pair on either sides of the chiasma.
✓Position of chiasmata move from one place to the other
known as terminalisation.
✓Nuclear membrane and nucleolus disappear
Diagram of prophase I stages of meiosis I
❑ Metaphase I
• Bivalents become attached to the spindle fibres through their
centromere.
• And move towards the metaphase plate with two centromeres of
each pair of homologous on opposite sides of the plate.
• Pairing of homologous chromosomes differentiate metaphase I of
meiosis from mitotic metaphase which does not has pairing of
homologous chromosome.
❑Anaphase I
• Centromeres of each pair of homologous chromosome move towards
opposite poles.
• Homologous chromosome are pulled further apart
❑ Anaphase I (contd)
• Division of centromeres which does not take place in meiotic
anaphase I differentiate it from mitotic anaphase.
❑Telophase
• Completion of anaphase migration of the chromosome towards the
spindle poles.
• Nuclear membrane forms around each set of homologous
chromosomes
• Cell divides into two daughter cells.
• It is an equational division similar to mitosis
• Duplication of chromosome
• Each cell contains only one set of chromosome (n) haploid unlike (2n)
diploid in mitosis or meiosis I.
❑ Meiosis II
• It is an equational division similar to mitosis
• Duplication of chromosomes
• Each cell contains only one set of chromosomes
(n) haploid unlike (2n) diploid in mitosis or
meiosis I
Prophase II
• Very short stage
• Characteristics is similar to other prophase stages
• Disappearance of nucleolus and nuclear membrane
❑Metaphase II
• Chromosomes are attached to the spindle fibers by their centromeres
• Align on a metaphase plate.
❑Anaphase II
• Each centromere divides at the beginning
• This takes place for the first and only time during meiosis
• Sister chromatids move to the opposite poles.
❑ Telophase II
• Completed when sister chromatids reached their respective
poles
• Nuclear membrane and nucleolus appear around each of the
haploid nucleus.