Physical Chemistry Lecture Notes: NMR & Spectroscopy
Physical Chemistry Lecture Notes: NMR & Spectroscopy
Week 2
CHEM*2880 Physical Chemistry
Prof. Jennifer Murphy
Class Schedule – Part I
Week Dates Topics Text Ref Seminar
Equivalent protons will not split each other because they are in
the same chemical environment.
Peak integrating to 2
B.
Degree of Unsaturation (Ω)
A calculation of the degree of unsaturation (Ω) is a good
way to start a spectroscopy problem. It tells you how many
rings and double bonds are in the molecule; thus, you know if
you should look for a carbonyl or a carbon- carbon double
bond, or a ring or an aromatic ring.
can be determined from the molecular formula
Rule 1: Replace all halogens in formula by H’s.
Rule 2: Omit oxygens and sulfurs.
Rule 3: For each N, omit N and subtract one H.
End up with CnHm and use
Ω=
( 2n + 2 ) − m m
= n − +1
2 2
Degree of Unsaturation Example Calculation
can be determined from the molecular formula
Rule 1: Replace all halogens in formula by H’s.
Rule 2: Omit oxygens and sulfurs.
Rule 3: For each N, omit N and subtract one H.
End up with CnHm and use ( 2n + 2 ) − m m
Ω= = n− +1
Example: C8H8NOBr 2 2
Apply rule 1: C8H9NO This means that the
molecule has 5 rings and/or
Apply rule 2: C8H9N pi bonds (or any
Apply rule 3: C8H8 combination of the two).
Ω = 6 – 14/2 + 1 = 0
Answer: Diisopropylamine
n+1=7 n+1=2
25
Fluorescence and Phosphorescence
The phenomenon of fluorescence and phosphorescence can be
represented by a Jablonski diagram:
There a singlet ground (S0), and excited first (S1)
S1 internal conversion electronic state where fluorophores can exist in
intersystem crossing
different vibrational levels (0, 1, 2, etc.). After light
absorption, a fluorophore is usually excited to a
higher vibrational level (S1 or S2) and then rapidly
T1 relaxes to the lowest vibrational level of S1, this is
referred to as internal conversion.
where I0 = is the intensity at t=0 and 𝜏𝜏 is the mean lifetime of the fluorescence state.
Fluorescence follows first-order kinetics and the rate constant (k) for the decay
is given by 1/𝝉𝝉
Fluorescence spectra and maxima of emission are often very sensitive to the type of
environment, and fluorescence spectra can be used to probe molecular
environments.
changes in shape or position of fluorescence spectrum reflects environment in
which the fluorescing molecules (fluorophore) exists.
can measure excitation spectrum, i.e., fluorescence intensity measured as 𝜆𝜆 of
excitation light varied; fluorescence intensity changes proportionally to amount of
absorption.
Fluorescence
Fluorescence has become the most widely used spectroscopy
in biology as many biological substances emit a characteristic
fluorescence such as:
Chlorophyll (red fluorescence)
Jellyfish (green fluorescence)
Many proteins (fluoresce from
tryptophan residues)
Jellyfish with Green Fluorescent Protein (GFP)
t/sec 0 1 2 3 4 5 10
I 100 43.5 18.9 8.2 3.6 1.6 0.02
Calculate the mean lifetime, τ, for the process. Is this fluorescence or
phosphorescence?
where I0 = intensity @ t = 0 and τ is the mean lifetime of the
fluorescence state.
We see at t = 0, I0 = 100.
To produce a linear plot, divide by I0 and take the natural log, i.e.,
I 1
ln = − t
I0 τ
Time (seconds)
0
0 1 2 3 4 5 6 7 8 9 10
-1
-2
ln (I/I0)
-3
-4
-5
-6
-7 y = -0.8506x + 0.0413
-8
R² = 0.9997
-9
34
Optical Rotary Dispersion and Circular Dichroism
optically active molecules (chiral) rotate plane-polarized light.
If pure sample containing 1 enantiomer, emerging light beam has a different
plane of polarization than entering beam:
dextrorotatory (+): plane is rotated clockwise, or CH2OH
levorotatory, ( – ): plane is rotated counter-clockwise. H C* Cl
𝛼𝛼 𝑇𝑇
𝜆𝜆 ×𝑀𝑀𝑀𝑀
𝜆𝜆 (deg·cm ·dm ·mol )=
𝑇𝑇
𝒎𝒎𝒎𝒎𝒎𝒎𝒎𝒎𝒎𝒎 𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟 = 𝛷𝛷 3 -1 -1
100
Practice Problem
Calculate the observed rotation of a solution of 0.5245g of (S)-1-amino-
1-phenylethane diluted to a volume of 10.0 mL with methanol at 20°C,
using the D line of a sodium lamp and a 1.00 dm tube. Specific rotation of
this material: [𝛼𝛼]23
𝐷𝐷=-30.0°. What is the molar rotation? CH3
Given: (S)-1-amino-1-phenylethane (MM: 121.18 g/mol) C* H
NH2
Practice Problem
The specific rotation of a pure substance is -5.90 degrees. What
is the percentage of this isomer in a mixture with an observed
specific rotation of -2.95 degrees?
Chapter 3 – First Law of Thermodynamics
3.1 Work and Heat
3.2 The First Law of Thermodyanmics
3.3 Heat Capacities
3.4 Gas Expansion
3.5 Calorimetry
3.6 Thermochemistry
3.7 Bond Energies and Bond Enthalpies
What is Thermodynamics
The science of heat and temperature, and of the laws governing the conversion
of thermal energy into mechanical, electrical, or other forms of energy.
Thermodynamics is a macroscopic science (i.e., is based on the properties of
the system and not the individual molecules or atoms – although they can give
us thermodynamic information via statistics)
Thermodynamics can tell us:
1. The maximum efficiency with which we can transform one energy into
another
[Link] preferred direction of a reaction or conversion
3. Relationships between energy forms
4. Equilibrium and equilibrium concentrations
it cannot tell us about reaction rates (this is kinetics)
Thermodynamic System
Thermodynamic System
The substance under study in which a change occurs is
called the thermodynamic system (or just system). i.e., the
part of the universe we are studying
Thermodynamic Surroundings
Everything else in the vicinity is called the
thermodynamic surroundings (or just the
surroundings). i.e., the rest of the universe.
Surroundings are assumed infinite and remain at constant
temperature and pressure.
The boundary:
• may be actual (test tube) or theoretical (a galaxy)
• controls transfer of work, heat and matter from the
system to the surroundings and vice-versa.
Open, Closed, and Isolated Systems
An open system may exchange
both energy and matter w/ its
surroundings.
A closed system may exchange
energy but not matter w/ its
surroundings.
An isolated system may exchange
neither energy nor matter w/ its (a) open system; (b) closed system; and
surroundings (c) isolated system
Diathermic and Adiabatic
A diathermic system allows heat flow into or out of the
system.
An adiabatic system prevents heat flow into or out of the
system. q=0.
Diathermic and Adiabatic Walls
Both containers are attempts to
create adiabatic walls.
45
State Functions
A state function describes state of system.
The following are all state functions:
Pressure, P
Volume, V
Temperature, T
Mass, m
Quantity, n
Internal Energy, U
Enthalpy, H
Entropy, S
Gibbs Energy, G
Energy Transfer
Systems will transfer different forms of energy in and out. This
energy can come in the form of either work (w) or heat (q).
The overall internal energy of a system is denoted U.
1st Law of Thermodynamics: Energy cannot be created or
destroyed, only transferred in and out of a system.
Therefore, the change in internal energy for a system U1 to U2 is
equal to the sum of work and heat in a closed system.
Restricted Pathways
Image from: Thermodynamic Processes: Isobaric, Isochoric, Isothermal and Adiabatic processes, YouTube Video:
[Link]
Reversibility
A reversible process is a theoretical
concept which states that a system is
always infinitesimally close to equilibrium.
Specific Heat Capacity and Molar Heat Capacity are intensive properties.
Heat Capacity
Heat Capacity, C, of a Sample of Substance
The quantity of heat needed to raise the temperature of the sample of
substance by one degree Celsius (or one Kelvin).
Molar Heat Capacity
The heat capacity for one mole of substance. The amount of heat
needed to raise 1 mole through 1 °C or 1 K unit (or the heat capacity per
mole). Units: J∙K–1∙mol–1
Specific Heat Capacity, C s or s (or specific heat)
The quantity of heat needed to raise the temperature of one gram of
substance by one degree Celsius (or one Kelvin) at constant pressure.
Units: J∙g–1∙K–1 e.g., H2O(l) Specific Heat = 4.184 J∙g–1∙deg–1
Heat Capacity
The heat required can be found by using the following equations.
After substitutions:
1
CP,m = CV,m + R where R = 8.314 J·K-1·mol-
5
Monoatomic ideal gases: 𝐶𝐶̄𝑝𝑝 = 𝐶𝐶̄𝑣𝑣 + 𝑅𝑅 = 𝑅𝑅
2
Practice Problem (3.3 Textbook)
Calculate the values of ∆U & ∆H for the heating of 55.40 g of Xe from 300 K
to 400 K. Assume ideal-gas behaviour and heat capacities at constant
volume and constant pressure are independent of T.
Physical Changes - Gases
I. Isothermal expansion (or compression) of a perfect gas,
i.e., constant T; ∆T = 0.
II. Reversible compression (or expansion)
at constant P (isobaric; ∆P = 0)
III. Reversible pressure change at constant volume (i.e.,
isochoric)
IV. Adiabatic expansion (no heat enters or leaves system, i.e.,
perfectly insulated)
I. Isothermal expansion (or compression) of a perfect gas,
i.e. , constant T; 𝚫𝚫T = 0.
e.g., a system is placed in a water bath; heat leaves or enters
system to keep T constant,
i.e., ∆U = 0 and ∆H = ∆U + nR∆T = 0
For a reversible path where P = Pex
∆U = (Cp – nR)∆T = Cv ∆T
III. Reversible pressure change at constant volume (i.e. ,
isochoric)
P1, V1, T1
e.g., a bomb calorimeter
A
T 1 > T2
where ∆V = 0 and w = 0
C
∴ Δ𝑈𝑈𝑉𝑉 = 𝑞𝑞𝑉𝑉 = 𝐶𝐶v Δ𝑇𝑇 = 𝑛𝑛𝐶𝐶̄v Δ𝑇𝑇 P2, V1, T2
Δ𝐻𝐻 = Δ𝑈𝑈 + Δ(𝑃𝑃𝑃𝑃) = Δ𝑈𝑈 + 𝑛𝑛𝑛𝑛𝑛𝑛𝑛
Δ𝐻𝐻 = 𝐶𝐶v Δ𝑇𝑇 + 𝑛𝑛𝑛𝑛𝑛𝑛𝑛 = (𝐶𝐶v + 𝑛𝑛𝑛𝑛)Δ𝑇𝑇 = 𝐶𝐶𝑝𝑝 Δ𝑇𝑇
Note: In reversible isobaric and isochoric processes, the work and heat values
are different, but 𝚫𝚫U and 𝚫𝚫H are identical. That is, U and H are the same at point
B in ii) and point C in iii). This is because they are in the same isotherm (T2) and
for an ideal gas U and H depend only on T and remain constant as T remains
constant. We know this from process i).
IV. Adiabatic expansion (no heat enters or leaves system,
i.e., perfectly insulated)
q = 0 but ∆T ≠ 0 and ∆U = w
For an ideal gas, U depends only on T, i.e.,
𝑤𝑤 = Δ𝑈𝑈 = 𝐶𝐶v Δ𝑇𝑇 = 𝑛𝑛𝐶𝐶̄v Δ𝑇𝑇
Since work is done by the system during an expansion, the
internal energy decreases and T drops, e.g., T 1 > T2
letting air out of a bicycle tire
A
T increases during compression P1, V1, T1
D
In this case, P, V and T are all changing
P2, V2, T2
Without going into the derivation, it can be shown
ϒ−1 ϒ
𝑇𝑇2 𝑉𝑉1 𝑃𝑃2 𝑉𝑉1
= 𝑎𝑎𝑎𝑎𝑎𝑎 = or P1 𝑉𝑉1ϒ = P2 𝑉𝑉2ϒ
𝑇𝑇1 𝑉𝑉2 𝑃𝑃1 𝑉𝑉2
𝐶𝐶𝑝𝑝
where ϒ =
𝐶𝐶𝑣𝑣
i.e., adiabatic expansions PVϒ = constant
Remember for a monoatomic ideal gas:
3 5 Cp 5
𝐶𝐶𝑣𝑣 = 𝑛𝑛𝑛𝑛 and 𝐶𝐶𝑝𝑝 = 𝑛𝑛𝑛𝑛, γ =
∴=
2 2 Cv 3
Work (hatched area in previous slide) is less than for isothermal
expansion.
As before, Δ𝐻𝐻 = Δ𝑈𝑈 + Δ 𝑃𝑃𝑃𝑃 = Δ𝑈𝑈 + 𝑛𝑛𝑛𝑛𝑛𝑛𝑛
Δ𝐻𝐻 = 𝐶𝐶v Δ𝑇𝑇 + 𝑛𝑛𝑛𝑛𝑛𝑛𝑛 = (𝐶𝐶v + 𝑛𝑛𝑛𝑛)Δ𝑇𝑇 = 𝐶𝐶𝑝𝑝 Δ𝑇𝑇
Practice Problem
A quantity of 0.850 moles of a monatomic ideal gas initially at a pressure
of 15.0 atm and 300 K is allowed to expand until its final pressure is 1.00
atm. Calculate the work done if the expansion is carried out adiabatically
and reversibly.
Practice Problem (3.81 Textbook)
Indicate whether the following thermodynamic quantities are positive,
zero, or negative for the system described. Clearly state your reasoning
for each answer.
i. heating of a gas at constant volume
w
q
ΔH
ΔU
w=− Pex ∆V =0
∆U = q + w = Cv ∆T
∆H = ∆U + ∆( PV ) ≅ ∆U
Physical Changes – Liquids and Solids
Isothermal (i.e., ΔT = 0)
Changing pressure leads to negligible volume changes (in
most cases) at constant T
qT ≅ 0
∆U =+ 0 ∆H
q w ==
wT ≅ 0
For changes of state for a pure solid or liquid, use a convenient
path to find q & w values, and sum to get ΔU.
e.g., isobaric path + isothermal path
isochoric path + isothermal path
For solids & liquids, since V doesn’t change appreciably with P:
CP ≅ CV , ΔUP ≅ ΔUV and ΔH = ΔU
Phase Transitions
A change of state or phase transition is a change of a substance from
one state (solid, liquid, gas) to another. The specific name or names for
each of these transitions are given below. Remember, temperature is
constant during a phase change!
Practice Problem
Compare the difference between ∆H & ∆U for the following:
(a) 1 mol ice → 1 mol water at 273K & 1 atm
(b) 1 mol water → 1 mol steam at 373 K & 1 atm
Given: Vm (L/mol) @ 273 K Vm (L/mol) @ 373 K
Ice: 0.0196
Water: 0.0180 0.0188
Steam 30.61
Practice Problem Solution
Practice Problem (3.79 Textbook)
State the conditions for each of the following:
(a) ∆H = ∆U + P∆V (b) Cp = CV + nR (c) γ = 5/3
Heating Curve for Water
q = mCs(steam)∆T
Temp q = mCs(liquid)∆T
(°C)
liquid
qp = n∆H°fus (kJ/mol)
= m∆H°fus (kJ/g)
0°C melting point
solid q = mCs(ice)∆T = n𝐂𝐂�(ice)∆T
Time heat supplied
Enthalpy (ΔH) Changes
For a chemical reaction: nAA + nBB → nCC + nDD
∆H
= ∑H products − ∑ H reagents
∆H
= nC H C + nD H D − nA H A − nB H B
Using standard enthalpy of formation values:
ΔH°Rxn = ΣnΔHf° (products) – ΣnΔHf° (reagents)