Understanding Amino Acids and Proteins
Understanding Amino Acids and Proteins
MODULE 2
BIOCHEMISTRY
PROTEINS
AMINO ACIDS
• Building blocks or monomer units of proteins
GENERAL FORMULA OF AMINO ACIDS: PROPERTIES
1. Amino acids are optically active
2. They have 2 distinct functional groups:
__________________, __________________
3. Varied R groups
4. Most naturally occurring amino acids are
___________________
5. Proteins are made up of a repertoire of
_______________ amino acids
PEPTIDE BOND
IMPORTANT CONCEPTS:
• Amino acids are linked by ______________ to
form polypeptide chains
• The peptide bond is formed between the
______________ of one amino acid and
______________ of the next amino acid
• The peptide bond is electrically
______________
• The peptide bond is______________ easily
hydrolyzed
Primary
• Shows the amino acid Alterations to the primary structure leads to
____________________ disorders
• The ____________________ of amino
acids determine the protein’s 3- Ex. Sickle Cell Anemia
dimensional structure
Secondary
§ Conformation adopted by the ____________________ regions of the polypeptide chain
§ Folded segments (alpha helices and beta sheets) are formed by a regular pattern of H-bonds
between the peptide N-H and C=O groups that are _______________________________________in a
linear sequence
ALPHA HELIX
§ Alpha helix is stabilized by____________________ H-bonds
§ NOT all amino acids are accommodated in an alpha helix
BETA SHEETS
§ Beta sheet is stabilized by interchain H-bonds
Tertiary
§ Shows the ____________________ of the polypeptide chain
Glycosylated Hemoglobin
§ The extent of glycosylation of hemoglobin in RBC’s depends on
the concentration of free ____________________
§ Glucose level is unusually high for patients with
____________________, so that hemoglobin becomes glycosylated
(HbA)
§ The major sugar derivative, ____________________ is formed from
the reaction of glucose with the amino terminal group on the
beta subunit of hemoglobin
§ The life span of a typical RBC is ____________________ so the
amount of HBA1c is a record of the average level of glucose in
the blood over the previous couple of months
• Antibodies/Immunoglobulin
7. Regulatory Proteins • Insulin- regulates ______________ and _______________
• Growth Hormone
Antibodies/Immunoglobulins
Ninhydrin Test
Based on the reaction between the reagent and the
___________________
group of the free amino acid of the test sample, which leads to the
oxidation of the compound and its deamination and resulting in
the formation of a deep blue colored solution.
Xanthoproteic Test
Based on the nitration of proteins, which leads to the formation of
a ____________________ precipitate that turns to orange on
treatment with an alkali
MODULE 2 Pharmacognosy
MIllon’s Test
Based on the reaction between the ____________________group of a
protein with mercuric sulfate in the presence of sodium nitrite and
sulfuric acid resulting in the formation of a red colored solution
OTHERS:
Test For
Sakaguchi Test for: ____________________
Test Principle:
Under alkaline condition, α- naphthol reacts with ____________________ group of
arginine, which upon treatment with hypobromite or hypochlorite, produces a
characteristic red color.
Hopkins-Cole Test for: ____________________
Test Principle: The ____________________ group of tryptophan reacts with glyoxylic acid
in the presence of concentrated H2S04 to give a purple color.
Sodium Test for: ____________________
Nitroprusside Principle: cysteine is the only amino acid containing a ____________________ group
Test (—SH). The group reacts with nitroprusside in alkaline solution to yield a red
complex.
Pauly diazo Test for: ____________________ and ___________________
Test Principle: Diazotization of sulphanilic acid produces diazonium salt, which reacts
with histidine or tyrosine yielding a red colored compound
Non-oxidative
Urea Cycle
TOPIC QUIZ
I. MULTIPLE CHOICE. Select the letter of the BEST ANSWER.
Questions
1. Amino acids are classified based on their side chains. Classify Glutamine and Aspartic acid.
A. Sulfur-containing side chain
B. Aromatic side chain
C. Carboxylic acid
D. Basic side chain
2. Proteins are composed of monomer units called amino acids. The amino acids are linked
together by __________ bonds.
A. Peptide
B. H-bonds
C. Ionic bonds
D. Dipole-dipole
3. Identify the chemical bond that joins amino acids together in a protein molecule.
A. Peptide
B. H-bonds
C. Ionic bonds
D. Dipole-dipole
4. What are the functional groups that are distinct amino acids?
A. Amino acid and carboxylic acid groups
B. Amino and hydroxyl groups.
C. Hydroxyl and carboxylic acid groups
D. Methyl and carboxylic acid groups.
5. This is described as the simplest amino acid.
A. Serine
B. Alanine
C. Glycine
D. Lysine
6. These are examples of transport and storage proteins:
A. Ribonuclease, Hexokinase
B. Actin, Myosin
C. Hemoglobin, Myoglobin, serum Albumin
D. Keratin, Actin
7. Ninhydrin Test is:
A. Based on the reaction of cupric ions of the reagent with the N of the peptide bonds,
forming a purple or violet colored complex.
B. Based on the nitration of proteins, which leads to the formation of a yellow precipitate that
turns to orange on treatment with an alkali,
MODULE 2 Pharmacognosy
C. Based on the reaction between the phenolic group of a protein with mercuric sulfate in the
presence of sodium nitrite and sulfuric acid resulting in the formation of a red colored
solution.
D. Based on the reaction between the reagent and the amino group of the free amino acid of
the test sample, which leads to the oxidation of the compound and its deamination, and
resulting in the formation of a deep blue colored solution.
8. The amino acid Tyrosine is converted to catecholamine. These are:
A. Norepinephrine and epinephrine
B. Norepinephrine, epinephrine, dopamine
C. Norepinephrine, dopamine
D. epinephrine, dopamine
9. The most abundant of the serum immunoglobulins is:
A. IgG
B. IgD
C. IgE
D. IgA
10. Among the 20 amino acids, which of the following pair undergoes non-oxidative direct
deamination?
A. Serine and Glycine
B. Threonine and Glycine
C. Glycine and Alanine
D. Serine and Threonine
11. An amino acid relevant to the production of heme
A. Alanine
B. Cysteine
C. Leucine
D. Glycine
ENZYMES
Important Enzymes
Enzyme Function
Lysozyme ____________________ of bacterial cell walls
Carbonic Anhydrase rapid inter-conversion of carbon dioxide and water into ____________________
acid, protons and bicarbonate ions.
Lactate Reversible conversion of ____________________ and Pyruvate
Dehydrogenase
Kinase Adds ____________________ groups to molecules
Citrate Synthase Condensation of Oxaloacetate and Acetyl coA to yield ____________________
Pyruvate Carboxylation of____________________ to give Oxaloacetate
Carboxylase
MODULE 2 Pharmacognosy
Classification of Enzymes
Classification Function and Examples
Oxidoreductases REDOX
Examples:
_______________
_______________
Transferases INTERmolecular Group Transfer (move chemical groups)
Examples:
_______________
_______________
Hydrolases Hydrolytic reactions (transfer of functional groups to water)
Examples:
_______________
_______________
Lyases Non-hydrolytic cleavage of bonds
Examples:
_______________
_______________
Isomerases INTRAmolecular group transfer
Examples:
_______________
_______________
Ligases Synthesis of new covalent bond between substrate, using ATP hydrolysis
Examples:
_______________
_______________
Enzyme Strategies
ENZYME STRATEGY
______________ to promote a reaction that is almost immeasurably slow at neutral pH in the
(Chymotrypsin) absence of a catalyst.
achieve a high absolute rate of reaction, suitable for integration with other rapid
physiological processes.
Function: hydration of carbon dioxide; one of the fastest enzymes known
achieve a high degree of specificity
Function: cleave DNA at defined positions
transfer a phosphoryl group from ATP to a nucleotide and not to water.
Example: Myosins convert the free energy of ATP into the mechanical energy of
contracting muscles
Enzyme Kinetics
Michaelis Menten
Enzyme can cause kinetic rate enhancement if a reaction and explains how reaction rates depend
on the concentration of enzymes and substrates
Lineweaver Burk
a graphical representation of enzyme kinetics. The x-axis is the reciprocal of the substrate
concentration, or 1 / [S], and the y-axis is the reciprocal of the reaction velocity, or 1 / V.
Sigmoidal Curve
Demonstrates enzyme cooperativity. The binding of a substrate to one active site in a molecule
increases the likelihood that the substrate will bind to the other active sites
TOPIC QUIZ
I. MULTIPLE CHOICE. Choose the letter of the BEST ANSWER
Questions
1. Which of the following enzymes is important for the control of infections because it hydrolyzes
bacterial cell walls?
A. Carbonic anhydrase
B. Lysozyme
C. Lactase dehydrogenase
D. Kinase
2. Enzymes employ different catalytic strategies while performing their roles. Which of the
following is the strategy of restriction endonucleases?
A. Utilization of the free energy associated with the hydrolysis of ATP.
B. Achievement of a high absolute rate of reaction that is suitable for integration with other
physiological processes
C. Attainment of a high degree of specificity
D. Promotion of a reaction that is immeasurably slow at neutral pH.
3. Fumarase is an example of:
A. Hydrolase
B. Ligase
C. Transferase
D. Lyase
MODULE 2 Pharmacognosy
4. Enzymes employ different catalytic strategies while performing their roles. Which of the
following is the strategy of carbonic anhydrase?
A. Attainment of a high degree of specificity
B. Achievement of a high absolute rate of reaction that is suitable for integration with other
physiological processes.
C. Promotion of a reaction that is immeasurably slow at neutral pH.
D. Utilization of the free energy associated with the hydrolysis of ATP.
5. Zymogens are inactive forms of enzymes. The zymogen of the enzyme trypsin is _______________.
A. Fibrinogen
B. Pepsinogen
C. Trypsinogen
D. procarboxypeptidase
6. Classify nucleoside monophosphate kinase
A. Ligase
B. Hydrolase
C. Lyase
D. Transferase
7. Enzyme inhibitors are employed in medicine for the treatment of diseases. Identify the carbonic
anhydrase inhibitor that finds clinical application in the treatment of glaucoma by reducing
intraocular pressure.
A. Celecoxib
B. Sulfanilamide
C. Acetazolamide
D. pirenoxine
8. The coenzyme of aminotransferases is:
A. Nicotinamide adenine dinucleotide
B. Pyridoxal phosphate
C. Flavin adenine dinucleotide
D. Nicotinamide adenine dinucleotide phosphate
9. Enzymes employ different catalytic strategies while performing their roles. Which of the
following is the strategy of trypsin and chymotrypsin?
A. Attainment of a high degree of specificity
B. Achievement of a high absolute rate of reaction that is suitable for integration with other
physiological processes.
C. Promotion of a reaction that is immeasurably slow at neutral pH.
D. Utilization of the free energy associated with the hydrolysis of ATP.
10. Enzymes employ different catalytic strategies while performing their roles. Which of the
following is the strategy of myosin?
A. Attainment of a high degree of specificity
B. Achievement of a high absolute rate of reaction that is suitable for integration with other
physiological processes.
C. Promotion of a reaction that is immeasurably slow at neutral pH.
D. Utilization of the free energy associated with the hydrolysis of ATP.
11. Which is the catalytic site model where the substrate induces a conformational change to the
enzyme?
A. Lock and Key Model
B. Hill Equation Model
C. Quaternary Structure
D. Induced-fit Model
12. The Lineweaver- Burk plot below is typical for a substrate with what type of inhibitor?
A. Competitive
B. Non-competitive
C. Uncompetitive
D. Mixed Competitive
13. Complete the general enzyme reaction scheme: E+S «ES à
A. E + S
B. E - S
C. E + P
D. E - P
COLUMN A COLUMN B
1. Identify the diagram that shows the actual body exposure to
drug after the administration of a certain dose of the drug.
D.
E.
NUCLEIC ACIDS
Complementarity of bases
DNA RNA
TYPES OF RNA
RNA FUNCTIONS
Template for transcribing the complementary DNA message
carry an amino acid to the ribosomes
Component of ribosomes
Removes introns
MODULE 2 Pharmacognosy
CENTRAL DOGMA
Steps Definition Site
DNA directed DNA synthesis
DNA directed RNA synthesis
RNA directed protein synthesis
REPLICATION
Enzyme Function
Opens/unwinds the DNA strand
Anneals a primer
Elongates the DNA by adding complementary bases to the strand
Joins discontinuous strands
Untangles the DNA
IMPORTANT TERMS
Term Definition
Leading a ____________________, single DNA strand that, during DNA replication, is replicated in
Strand the 3' – 5' direction
Lagging a ____________________, single DNA strand that, during DNA replication, is replicated in
Strand the 5' - 3' direction
Okazaki short sequences of DNA nucleotides
Fragments synthesized discontinuously and later linked together by the enzyme DNA ligase to
create the lagging strand
Telomeres the end of a chromosome
made of repetitive sequences of non-coding DNA that protect the chromosome from
damage
MUTATION
POINT MUTATION
Definition: a ____________________ in a single nucleotide within a DNA sequence
2 Types:
1. Transitional
• when a____________________ base replaces a ____________________ base
Example:
ACU- Thr
GCU- Ala
A and G are both purine bases
• when a ____________________ base replaces a ____________________ base
Example:
GUU- Val
GCU- Ala
U and C are both pyrimidine bases
2. Transversional
• When a____________________ base replaces a ____________________ base and vice versa
Example:
GAG- Glu
GCG- Ala
FRAMESHIFT MUTATION
Definition: genetic mutation caused by a ____________________ or ____________________ in a DNA
sequence that shifts the way the sequence is read.
A. Deletion
Definition: involves the ____________________ of one or more nucleotides from a segment of DNA
Example:
Original Sequence:
GUU GCU GGU UCG UAU
Val Ala Gly Trp Tyr
B. Insertion
Definition: involves the ____________________ of one or more nucleotides into a segment of DNA.
Example:
Original Sequence:
GUU GCU GGU UCG UAU
Val Ala Gly Trp Tyr
TOPIC QUIZ
Questions
1. This polymer of ribonucleotides is responsible for transcribing the complementary DNA message.
A. rRNA
B. tRNA
C. hnRNA
D. mRNA
2. Identify the stage in protein synthesis when the anticodon of tRNA recognizes the codon on
mRNA.
A. Termination
B. Transcription
C. Translation
D. Elongation
3. Which of the following are complementary base pairs in DNA?
A. Adenine- Thymine, Cytosine—Guanine
B. Adenine –Thymine, Cytosine—Uracil
C. Uracil— Thymine, Cytosine— Guanine
D. Uracil— Thymine, Adenine – Guanine
4. What is the complementary sequence for this DNA segment: CATCAA
A. CGAATU
B. CUAGUU
C. GTAGTT
D. TTAGTT
5. One of the causes of this genetic condition is the absence of adenosine deaminase, an enzyme in
the purine degradation pathway
A. Severe combined immunodeficiency
B. Neural tube defects
C. Gout
D. Lesch-Nyhan syndrome
6. DNA polymerase plays an important role in _______________.
A. Termination
B. Primer binding
C. Replication fork formation
D. Elongation
7. Select the sequence of the mRNA segment synthesized from this DNA template strand:
---CTCCGCCCGACG-----
A. GAGGCGGGCUGC
B. GAGGCGGCCUGC
C. GACGCGGGCUGG
D. GAGCCGGGCUGC
8. Folates are important precursors of DNA nucleotides. During pregnancy, supplements containing
folates must be taken to prevent:
A. Lesch-Nyhan syndrome
B. Severe combined immunodeficiency
C. Gout
D. Neural tube defects
9. Pick the one that does not belong to the group.
A. Telomeres
B. Okazaki fragments
C. Leading strand
D. Lagging strand
10. A disease that is associated with an excessive accumulation of urate.
A. Gout
B. Severe Combined Immunodeficiency
C. Neural Tube Defects
D. Lesch Nyhan Syndrome
11. The start codon AUG codes for what amino acid?
A. Alanine
B. Glycine
C. Phenylalanine
D. Methionine
MATCHING TYPE
A. Determine the type of Point Mutation
Column A Column B
1. AAU to AAC A. Transitional
2. GAU to GAC B. Transversional
3. GCC to GAC
4. UUA to UGA
5. CAU to CAA
MORSE TYPE
Questions
Select the statements the best describes DNA molecules
I. DNA is deoxyribose acid composed of two chains that coil around each other to form a single
helix carrying genetic instructions
II. The four base in DNA that are responsible for encoding genetic information are thymine,
adenine, cytosine and uracil.
III. In DNA, adenine pairs with thymine, and cytosine with guanine
IV. DNA replication occurs in all living organisms.
MODULE 2 Pharmacognosy
V. The keto tautomers of purines and pyrimidines form the base-to-base H-bonds that are
important for base pairing
A. III, IV, V
B. II, III
C. I, III
D. I, II, III
Select the statements that best characterize RNA molecules
I. RNA naturally occurs as a duplex of two separate strands
II. The secondary structure of tRNA molecules resemble a clover leaf.
III. The base pairs in RNA molecules are adenine and thymine, uracil and cytosine
IV. RNA is a ribonucleotide
V. RNA is synthesized from DNA by an enzyme RNA polymerase during transcription.
A. II, III, IV
B. II, IV
C. II, IV, V
D. I, II
Which statements best describe DNA replication?
I. The first step in DNA replication is the “unzipping” of the double helix structure of the DNA
molecule.
II. DNA polymerases are enzymes that synthesize a DNA polymer
III. A polymerase adds nucleotides to an existing strand
IV. A topoisomerase cuts and rejoins the helix
V. A helicase joins the two separate strands
A. I, II, III, IV
B. II, III, IV, V
C. I, II, III, IV, V
D. I, III, IV
Select the statements that best describe protein synthesis.
I. Proteins are synthesized stepwise by the polymerization of amino acids in a unidirectional
manner, beginning at the C-terminus and ending at the N-terminus
II. The mRNA provides the instruction for the synthesis of a specific protein.
III. The information encoded in mRNA is translated by tRNA molecules that bind to the mRNA at
one end and carry specific amino acids at the other end.
IV. The synthesis of the growing polypeptide is carried out on toposomes that RNA and associated
proteins.
A. I, II, III
B. I, II, III, IV
C. II, IV
D. II, III
Which statements best describes nucleosides?
I. Nucleoside consists of nuclelobase and a five-carbon sugar
II. Nucleosides are precursors for nucleic acid synthesis.
III. Nucleosides and nucleoside analogs are used in antiviral and anticancer drug therapy
IV. Nucleosides are composed of nucleobases covalently attached to a 5-carbon sugar
V. The nucleobases of nucleosides are non-aromatic heterocyclic compounds containing N.
A. II, III, IV
B. I, III, V
C. I, II, III, IV
D. I, II, III, IV, V
XIII. VITAMINS
Vitamin Description
§ It is a non-polar vitamin, a mixture of tocopherols
§ Serves as an antioxidant in biomembranes, protecting phospholipids and
embedded proteins against the oxidative attack of free radicals
§ It is made by gut bacteria
§ Serves as a co-factor in carboxylation reactions
§ Co-factor in numerous biochemical index reactions, where its ability to
accept and donate electrons one at a time is valuable
§ Required for the clotting of blood
§ Retinol, Retinal, Retinoic acid are the 3 forms of the vitamin
§ Retinal serves as an important co-factor for the protein rhodopsin, a visual
pigment in rod cells
§ Deficiency may lead to
1. Beri-beri
2. Wernicke Korsakoff Syndrome- A neuropsychiatric disorder that arises from
lack of thiamine in the diet, poor absorption of thiamine from the gut, or poor
storage of thiamine in the live.
VITAMIN D
ACTIVATION DEFICIENCY STATES
7-dehydrocholesterol ________________
deficient mineralization at the cartilage of growth
plates in children
Cholecalciferol
_________________
bone softening in adults
25-hydroxycholecalciferol
1,25- dihydroxycholecalciferol
TOPIC QUIZ
Questions
1. The coenzyme that is required for transamination, a reaction catalyzed by aminotransferases.
A. Nicotinamide adenine dinucleotide
B. Pyridoxal phosphate
C. Flavin adenine dinucleotide
D. Nicotinamide adenine dinucleotide phosphate
2. Select the vitamin that requires bile salts and dietary lipids for its efficient absorption from the
intestinal tract.
A. Vit C
B. Vit K
C. Vit A
D. Vit E
3. Evaluate which compound is converted to cholecalciferol
A. 5-dihydrocholesterol
B. 6-dehydrocholesterol
C. 7-dihydrocholesterol
D. 7-dehydrocholesterol
4. It is a non-polar vitamin, a mixture of tocopherols. Serves as an antioxidant in biomembranes,
protecting phospholipids and embedded proteins against the oxidative attack of free radicals
A. Vitamin A
B. Vitamin E
C. Biotin
D. Riboflavin
5. It is made by gut bacteria. Serves as a co-factor in carboxylation reactions
A. Vitamin K
B. Vitamin E
C. Biotin
D. Riboflavin
6. Co-factor in numerous biochemical index reactions, where its ability to accept and donate
electrons one at a time is valuable
MODULE 2 Pharmacognosy
A. Vitamin K
B. Vitamin E
C. Vitamin A
D. Riboflavin
7. Vitamin required for the clotting of blood
A. Vitamin K
B. Vitamin E
C. Vitamin A
D. Riboflavin
8. Retinol, Retinal, Retinoic acid are the 3 forms of the vitamin. Retinal serves as an important co-
factor for the protein rhodopsin, a visual pigment in rod cells.
A. Vitamin K
B. Vitamin E
C. Vitamin A
D. Riboflavin
A neuropsychiatric disorder that arises from lack of thiamine
In the diet, poor absorption of thiamine from the gut, or poor storage of thiamine in the live.
A. Diabetes Mellitus, Type I
B. Diabetes Insipidus
C. Ketosis
D. Wernicke-Korsakoff Syndrome
PHARMACOGNOSY
TOPIC QUIZ
Questions
1. This method of evaluating crude drugs involves the use of the organs of senses. The analyst
evaluates the macroscopic appearance of the drug, its odor and taste, the sound or “snap” of the
fracture, and the feel of the drug to the touch.
A. Microscopic method
B. Biological method
C. Organoleptic method
D. Chemical method
2. This method of evaluating crude drugs makes use of physical constants, such as optical
rotation, to the active constituents of drugs.
A. Physical method
B. Chemical method
C. Biological method
D. Organoleptic method
SPECIFIC CONSTITUENTS
1. TAXANES
______________ Taxol (Paclitaxel) is an ______________ agent
Taxol is an antimalarial drug
______________
Taxanes were originally identified from
plants of the genus Taxus
______________ The taxanes, paclitaxel and docetaxel,
Taxanes bind to the microtubules and ________________ the depolymerization of
enhance their depolymerization. microtubules
______________ Paclitaxel, Docetaxel and Cabazitaxel are Taxanes
Paclitaxel, docetaxel, sinigrin, prunasin, Sinigrin is an_______________ Glycoside; Prunasin is
cabazitaxel are examples of taxanes. a________________ Glycoside
2. PRUNASIN
______________
A cyanogenic glycoside that occurs in the
bark of Prunus serotina.
______________ Prunasin is a ____________________ glycoside
A thiocyanogenic glycosides.
______________ The aglycone is ____________________
Its aglycone is amygdalin
3. GLYCOSIDES
______________
Both alpha- and beta-glycosides exist, but
ONLY the beta form occurs in nature
______________
Natural enzymes like emulsin, hydrolyze
only the beta forms.
______________ The non-sugar component is known as the
The sugar component is called aglycone, ____________________ or ____________________; the
and the non-sugar component, glycone. sugar component is known as the
____________________
______________
They are acetals in which the hydroxyl of
the sugar is condensed with the hydroxyl
group of the non-sugar component.
4. FLAVONOIDS
______________ Flavonoids are polyphenolic molecules containing
These are polyphenolic molecules that 15 carbon atoms and are ____________________ in
contain 15 carbon atoms and are insoluble water.
in water
MODULE 2 Pharmacognosy
5. NON-HYDROLYZABLE TANNINS
______________ Hydrolyzable Tannins:
Gallotannin is a condensed tannin Consist of ________________ or related polyhydric
compounds esterified with glucose
Readily hydrolyze to form __________________
and________________
6. RESINS
______________
The metallic salts of resins are called
resonates
______________
Balsams are resinous mixtures that contain
cinnamic acid, benzoic acid, or both, or
esters of these acids.
______________ Resins are ____________________ in water
Resins are soluble in water
______________
Chemically, resins are complex mixtures of
resin acids, resin alcohols, resinotannols,
esters, and resenes.
7. CINCHONA ALKALOIDS
______________ Quinine and Quinidine are chemically
Cinchonine is the parent alkaloid of the 6-methoxycinchonine
quinine series
______________ Cinchonine, Cinchonidine, Quinine and Quinidine
Classified as Isoquinoline alkaloids are __________________ ALKALOIDS
______________ ____________________ is the isomer of Cinchonidine
Cinchonine is the isomer of quinidine and ____________________ is the isomer of Quinidine
quindine is the isomer of quinine
TOPIC QUIZ
MATCHING TYPE
Column A Column B
1. Locust Bean Gum A. Shrub or Tree Exudate
2. Pectin B. Marine Gums
3. Xanthan C. Seed Gums
[Link] D. Plant Extract
cellulose E. Cellulose Derivatives
5. Tragacanth F. Microbial Gum
VOLATILE OILS
METHODS OF EXTRACTING VOLATILE OILS
Method Application and Examples
Water Distillation _____________sample
Example:
Direct Steam Distillation _____________sample
Examples:
Water and Steam Distillation _____________ or _____________sample
Examples:
Destructive Distillation _____________oils
MODULE 2 Pharmacognosy
Example:
Ecuelle ______________volatile oils
Example:
Enfleurage ______________petals
Example:
Enzymatic Action _____________Volatile Oils
Example:
TERPENES
ISOPRENE
5-carbon compound
CH2=C(CH3)-CH=CH2
Terpene Isoprene Units, MF and Examples
Monoterpenes 2-C10H16
Examples:
Carvone ( Caraway oil) ______________ Lavender oil)
_____________ (Buchu oil)
Methylsalicylate (Wintergreen oil)
Sesquiterpenes 3- C15H24
Examples:
Artemisinin, Bisabolol, Farnesol and Eudesmol
Diterpenes 4- C20H32
Examples:
_____________, Retinal, and _____________
Triterpenes 6- C30H48
Examples:
Lanosterol, Squalene
Tetraterpene 8- C40H64
Examples:
Beta carotene, Lycopene
SPECIAL STRUCTURES
Structure Family and
Examples
Glandular Hairs ________________
/________________
Mentha piperita
Mentha spicata
Thymus vulgaris
Lavandula angustifolia
Origanum vulgare
Modified Parenchymal Cells __________________
Piper nigrum
Peperomia pellucida
Vittae (oil tubes) _______________/
________________
Foeniculum vulgare
Coriandrum sativum
Carum carvi
Conium maculatum (Poison Hemlock)
Schizogenous and Lysigenous Passages _________________ and _________________
Pinus palustris
Pinus strobus
Citrus spp
*Artemisia absinthium
TOPIC QUIZ
Questions
1. Peppermint oil is isolated from the fresh leaves of Mentha piperita. Determine the best method to
isolate the oil.
A. Enfleurage
B. Extraction with a volatile solvent
C. Expression
D. Steam Distillation
2. What type of terpenes are retinol and phytol?
A. Monoterpenes
B. Diterpenes
C. Triterpenes
D. Sesquiterpenes
3. This group of terpenes are composed of 20 carbon atoms.
A. Sesquiterpenes
B. Diterpenes
C. Triterpenes
D. Tetraterpenes
4. What special secretory structures are found in Pinus palustris?
A. Modified parenchyma cells
B. Schizogenous intercellular spaces
C. Vittae
D. Glandular hairs
5. Isoprene is a
A. 5-carbon compound with the formula:
CH3-CH(CH3)-CH2CH3
B. 3-carbon compound with the formula:
CH2=C=CH2
C. 4-carbon compound with the formula:
CH2=CH-CH=CH2
D. 5-carbon compound with the formula: CH2=C(CH3)-CH=CH2
6. The volatile oils from Caraway and Buchu are chemically classified as:
A. Peroxides
B. Phenols
C. Ketones
D. Ethers
7. The volatile oils from Lavender oil and Wintergreen are chemically classified as:
A. Ketones
B. Phenols
C. Aldehydes
D. Esters
ALKALOIDS
Alkaloidal Precipitants:
Reagent Composition
____________________ Reagent Mercury in Potassium Iodide
____________________ Reagent Iodine in Potassium Iodide
____________________ Reagent Potassium Bismuth Iodide
____________________ Reagent Picric Acid Solution
CLASSIFICATION OF ALKALOIDS
Classification STRUCTURE Examples
MODULE 2 Pharmacognosy
Pyridine-Piperidine L
Ar
N
Tropane S
H
At
Coc
Isoquinoline San
Opium Alkaloids (Phenanthrene Em
Derivatives) Hy
Mor
Tubo
Quinoline Q
Q
C
C
Indole Car
P
E
N
Phenylethylamine Ep
Mes
Col
Cath
Steroidal Ver
Purines/Methylxanthines C
Theo
Theo
Important Alkaloids
Alkaloid Source/Use
Ergonovine Source: Ergot produced by Claviceps purpurea
Classification:
_____________ Use:
_______________ agent
Reserpine Source:
Classification: Rauvolfia serpentina
_____________
Use:
_______________ agent
Atropine Source:
Classification: Atropa belladonna, _________________
_____________
Uses:
_________________, _________________
Hyoscyamine Source:
Classification: Datura _________________ /Hyoscyamus
_____________ _________________ /
Uses:
Anti-cholinergic, spasmolytic
Lobeline Source:
Classification: Lobelia _________________
_____________
Use:
Smoking _________________
Cocaine Source: Erythroxylum
Classification: _________________
_____________ Use:
local anesthetic
Nicotine Source:
Classification: Nicotiana tabacum
_____________ Use:
smoking ____________________
TOPIC QUIZ
Questions
Select the statements that best describes the biosynthesis if hyoscyamine
I. Feeding studies with labeled ornithine have shown that this is incorporated
stereospecifically to form the pyrrolidine ring of tropane
II. Tyrosine is the precursor of tropic acid
III. Esterification of tropic acid with tropine produces hyoscyamine
IV. Hyoscyamine is dextrorotatory
A. II and III
B. II, III and IV
C. I, II and III
D. II and III
Select the statements that best describes the Solanaceous Alkaloids
I. The belladonna alkaloids are most abundant in plants after the fruits have ripened
II. The principal solanaceous alkaloids are hyoscyamine, atropine and scopolamine
III. Atropine and scopolamine are competitive with acetylcholine at the post ganglionic
synapse of the parasympathetic nervous system producing an antispasmodic effect.
IV. Scopolamine is also known as hyoscyamine, and atropine is also known as hyoscine
A. I and II
B. III and IV
C. I, II and III
D. II and III
Select the statements that best describes the following alkaloids:
I. Atropine is racemic hyoscyamine
II. Hyoscyamine is the ester of tropic acid and tropine
III. Scopolamine is particularly abundant in Datura metel
IV. On hydrolysis, Scopolamine yields tropic acid and scopoline
A. I, II and III
B. I, II, III and IV
C. II and III
D. I and IV
MODULE 2 Pharmacognosy
TOPIC QUIZ
Determine the names of these alkaloids:
Structure Choices
A. Cocaine
B. Reserpine
C. Quinine
D. Morphine
A. Morphine
B. Cocaine
C. Caffeine
D. Quinine
A. Quinine
B. Morphine
C. Caffeine
D. Reserpine
A. Caffeine
B. Cocaine
C. Reserpine
D. Morphine
A. Morphine
B. Caffeine
C. Cocaine
D. Reserpine
Questions
1. The Alkaloidal test reagent is a solution of potassium bismuth iodide and gives and orange
colored precipitate.
A. Dragendorff’s
B. Mayer’s
C. Wagner’s
D. Hager’s
2. Classify Ergonovine and Reserpine.
A. Imidazole
B. Purine
C. Steroidal
D. Indole
3. Family name of Atropa belladonna
A. Papaveraceae
B. Fabaceae
C. Solanaceae
D. Berberidaceae
4. Find the pairs that are NOT correctly matched.
A. Lobelia inflata – hyoscine
B. Hyoscyamus niger – hyoscyamine
C. Erythroxylum coca – cocaine
D. Datura stramonium – hyoscyamine
5. Select the pair that is NOT correctly matched.
A. Tobacco – nicotine for smoking cessation
B. Belladonna – spasmolytic agent
C. Datura – anticholinergic agent
D. Coca- local analgesic
6. The source of the alkaloid thebaine
A. P. somniferum
B. P. mirabilis
C. P. aeruginosa
D. P. bracteatum
7. Quinine is from a plant from the family
A. Rubiaceae
B. Apocynaceae
C. Berberidaceae
D. Labiatae
Column A Column B
1. Morphine A. Isoquinoline F. Quinolizidine
2. Ergotamine B. Indole G. Aporphine
3. Quinine C. Quinoline H. Purine
4. Caffeine D. Imidazole
5. Atropine E. Tropane
Column A Column B
1. A condensation product of pyrrolidine and A. Pyridine-piperidine alkaloids
piperidine B. Tropane alkaloids
2. The class to which opium alkaloids belong C. Quinoline alkaloids
3. The class to which ergonovine, reserpine and D. Isoquinoline alkaloids
strychnine belong E. Indole alkaloids
4. The class to which quinine, quinidine, F. Imidazole alkaloids
cinchonine and cinchonidine belong G. Purine alkaloids
5. The class to which caffeine and theobromine H. Steroidal alkaloids
belong
SEQUENCING STEPS
ASCIGEROUS STAGE
I. The mycelium eventually replaces the entire ovary, then gradually hardens, becomes
dark purple, and forms a resting body known as a sclerotium.
II. The sclerotium, in turn, normally falls to the ground, overwinters and in the spring,
produces sexual spores or ascospores that repeat the entire cycle.
MODULE 2 Pharmacognosy
PLANT HORMONES
Abscissic • Metabolic ____________________
acid • acts as an ____________________ to gibberellic acid, and increases tolerance of
plants to____________________
• Helps in seed development and maturation
• Induces seed dormancy
• Help withstand unfavorable/critical growth factors
Auxins • ____________________ plant growth hormone to be discovered
• Isolated from human ____________________
• Found in growing ____________________ and ____________________
• Promote flowering
• Prevent early fall of leaves and fruits
• Promote fall of old leaves and fruits
Gibberellins • There are ____________________ kinds of this hormone
• Increase axis length (lengthens the stems of ____________________)
• Hastens maturity period in conifers
• Promotes seed ____________________
• Delay senescence in fruits
Cytokinins • exist in areas where rapid ____________________ takes place
• Delays leaf senescence by promoting mobilization of nutrients
• Formation of new leaves and chloroplast
• Promote lateral shoot growth and adventitious shoot formation
• Help overcome apical dominance
Ethylene • ____________________ hormone
• Hastens fruit ____________________
• Promotes abscission and senescence
• Increases root growth and root hair formation
TOPIC QUIZ
Questions
1. An anti-diabetic herbal medicine.
A. Banaba
B. Yerba Buena
C. Tsaang gubat
D. Lagundi
2. What is the scientific name of Bignay?
A. Hibiscus sabdariffa
B. Abelmoschus esculentus
C. Ehretia microphylla
D. Antidesma bunius
3. What is the scientific name of Tawa-Tawa?
A. Taxus brevifolla
B. Ehratia microphilla
C. Abelmoschus asculentus
D. Grammatophyllum scriptum
4. Select the correct triad of “health foods”
A. Symphytum officinale – Comfrey – hepatotoxic
B. Spirulina maxima – spirulina – fertility drug
C. Glycyrrhiza glabra – licorice – antidiabetic
D. Oenothera biennis – Evening Primrose – analgesic
5. Which hormone is considered as the plant growth and metabolic inhibitor, acts as an antagonist
to gibberellic acid, and increases the tolerance of plants to stress?
A. Abscisic acid
B. Gibberellins
C. Auxins
D. Ethylene
6. This substance is converted to phenylalanine in the Shikimic Acid Pathway.
A. Anthranilic acid
B. Chorismic acid
MODULE 2 Pharmacognosy
C. Para-hydroxyphenylpyruvic avid
D. Phenylpyruvic acid
7. The Shikimic acid pathway is a biogenetic pathway that leads to the formation or folates and
______
A. Aromatic compounds
B. Alipahatic compounds
C. Branched compounds
D. Cyclic compounds
8. Glucovanillin is classified as a/an ______________. It is mainly used as a/an ____________.
A. Aldehyde, flavor
B. Flavonol, antibacterial
C. Anthraquinone, cathartic
Saponin, analgesic
9. What is the hypotensive constituent isolated from Rauwolfia serpentina?
A. Reserpine
B. Scopolamine
C. Emetine
D. Codeine
10. Which of the following Scientific Name- Constituent- use is correct?
A. Datura stramonium—Scopolamine—Flavor
B. Glycyrrhiza glabra—limonene— Expectorant
C. Catharanthus roseus—Quinine-anticancer
D. Citrus sinensis—Limonene -flavor
11. This was the first growth hormone discovered; it was first isolated from human urine; found in
growing stems and roots; and promotes flowering in plants.
A. Auxins
B. Abscisic acid
C. Cytokinin
D. Ethylene
12. There are 100 kinds of this hormone, it lengthens the stem of sugarcane hastens maturity period
in group conifers and promotes early seed production.
A. Ethylene
B. Cytokinin
C. Auxins
D. Abscisic acid
13. Exists in areas where rapid cell division take place and delays leaf senescence.
A. Cytokinin
B. Auxins
C. Gibberellins
D. Abscisic acid
14. Induces dormancy in seeds and helps seeds withstand unfavorable growth factors
A. Abscisic acid
B. Gibberellins
C. Auxins
D. Cytokinin
15. Hastens fruit ripening and increases root growth and root hair formatins, thereby increasing
their absorption surface area.
A. Ethylene
B. Auxins
C. Cytokinin
D. Gibberellins
16. This traditionally used herbal plant is used to aid cough, stomach ulcers and has been shown to
exhibit anti-inflammatory properties
A. Vitex negundo
B. Glycyrrhiza glabra
C. Foeniculum vulgare
D. Blumea balsamifera
BIOLOGICALS
1. Which vaccine is recommended for children 2-3 months of age.
A. Live Oral Poliovirus Vaccine
B. Covid-19 Vaccine
C. Rabies Vaccine
D. Hepatitis B Vaccine
2. Identify the vaccine, which is a sterile suspension of inactivated virus strains that are grown
separately in primary cultures of Rhesus monkey kidney tissues, bathed in a complex nutrient fluid
containing more than 50 ingredients.
A. Influenza virus vaccine
B. Rabies Vaccine
C. Poliomyelitis vaccine
D. Smallpox vaccine
TYPE A
TYPE B
The immune system can produce antibodies against the various short oligosaccharides
I. People with A-blood type will produce antibodies against the B-type oligosaccharides.
Conversely, people with B-blood type will produce antibodies against the A-type antigen
II. The antigens can cause blood cells to clump together
III. People with O-type antigen are called universal recipients
IV. People with O-type antigen are universal donors, in recognition of the fact that people with
A- or B- type blood lack antibodies to the O antigen
A. All statements are correct
B. if 2 statements are correct
C. if 1 statement is correct
D. if 3 statements are correct
END.