Understanding Mendelian Genetics Concepts
Understanding Mendelian Genetics Concepts
in
GENETICS
18
Learning Objectives
Info bits
Parental
Genera�on Punnett square is a checker board form
TT (Tall) � (Dwarf)
devised by a British geneticist [Link]
Gametes T t for study of genetics. It is a graphical
T t
representation to calculate the probability
F1 Genera�on
Tt of all possible genotypes of offsprings in a
Genotype All are Tt X genetic cross.
(Ma�ng)
Phenotype All are tall
Tt Tt
Gametes T t T t
Genotype TT : Tt : � = 1 : 2 : 1
Phenotype Tall : Dwarf 3 : 1
Dihybrid cross involves the inheritance
TT Tt Tt �
(Tall) (Tall) (Tall) (Dwarf) of two pairs of contrasting characteristics
Figure 18.1 Monohybrid cross (or contrasting traits) at the same time. The
two pairs of contrasting characteristics chosen
in pairs and may be alike as in pure breeding by Mendel were shape and colour of seeds:
tall plants (TT) and dwarf plants (tt). This is round-yellow seeds and wrinkled-green
referred to as homozygous. If they are unlike seeds.
(Tt) they are referred to as heterozygous. Mendel crossed pea plants having round-
1. Two factors making up a pair of yellow seeds with pea plants having wrinkled-
contrasting characters are called alleles. green seeds. Mendel made the following
Phenotypic expression of alleles are called observations:
allelomorphs. One member of each pair is
1. Mendel first crossed pure breeding pea
contributed by one parent.
plants having round-yellow seeds with
2. When two factors for alternative
pure breeding pea plants having wrinkled-
expression of a trait are brought together
green seeds and found that only round-
by fertilization. The character which
yellow seeds were produced in the first
expresses itself is called dominant
(Tallness) condition and that which is generation (F1). No wrinkled-green seeds
masked is called recessive condition were obtained in the F1 generation. From
(Dwarfness). this it was concluded that round shape and
3. The factors are always pure and when yellow colour of the seeds were dominant
gametes are formed, the unit factors traits over the wrinkled shape and green
segregate so that each gamete gets one of color of the seeds.
the two alternative factors. It means that 2. When the hybrids of F1 generation pea
factors for tallness(T) and dwarfness(t) are plants having round-yellow seeds were
separate entities and in a gamete either T cross-bred by self pollination, then four
or t is present. When F1 hybrids are self types of seeds having different combinations
crossed the two entities separate and then
of shape and color were obtained in second
unite independently, forming tall and dwarf
generation or F2 generation. They were
plants.
263 Genetics
RY rY Ry ry
18.4 Mendel’s Laws
RY
RRYY RrYY RRYy RrYy Based on his experiments of monohybrid
rY
and dihybrid cross, Mendel proposed three
RrYY rrYY RrYy rrYy important laws which are now called as
Mendel’s Laws of Heredity.
Ry
RRYy RrYy RRyy Rryy
• Law of Dominance:
ry
RrYy rrYy Rryy rryy
“When two homozygous individuals
with one or more sets of contrasting
Phenotypic ra�o of F2 genera�on - 9:3:3:1 characters are crossed, the characters that
Round, Yellow - 9 Wrinkled, Yellow - 3 appear in the F1 hybrid are dominant and
Round, Green - 3 Wrinkled, Green - 1 those that do not appear in F1 are recessive
characters".
Figure 18.2 Dihybrid Cross
• Law of Segregation or Law of purity of
round yellow, round-green, wrinkled gametes:
yellow and wrinkled-green seeds. “When a pair of contrasting factors are
The ratio of each phenotype (or appearance) brought together in a F1 hybrid. The two
of seeds in the F2 generation is 9:3:3:1. factors of the allelic pair remain together
This is known as the Dihybrid ratio. without mixing and when gametes are
formed, the two separate out, so that only
From the above results it can be one enters each gamete.”
concluded that the factors for each character
or trait remain independent and maintain • Law of independent assortment:
their identity in the gametes. The factors are “In case of inheritance of two or more
independent to each other and pass to the pairs of characters simultaneously, the
offsprings (through gametes).
More to Know
18.5 C
hromosomes, DNA
and Genes
Figure 18.3 Structure of chromosome
The human body is made up of million
A chromosome consists of the following
cells. The nucleus of each cell contains thin
regions
thread like structures called chromosomes.
The term ‘chromosomes’ was first coined by Primary constriction: The two arms of a
Waldeyer in 1888. The chromosomes are the chromosome meet at a point called primary
carrier of genetic material which contain the constriction or centromere. The centromere
heredity information. is the region where spindle fibres attach to the
The chromosomes are highly condensed chromosomes during cell division.
coiled chromatin fibres packed with the Secondary constriction: Some chromosomes
DNA (Deoxyribonucleic acid) that forms the possess secondary constriction at any point
genetic material. Genes are segments of DNA, of the chromosome. They are known as
which are responsible for the inheritance the nuclear zone or nucleolar organizer
of a particular phenotypic character. Each (formation of nucleolus in the nucleus).
gene is present at a specific position on a
Telomere: The end of the chromosome is called
chromosome called its locus. During cell
telomere. Each extremity of the chromosome
division, the genetic information present in
has a polarity and prevents it from joining
the genes are passed from one generation to
the adjacent chromosome. It maintains and
another.
provides stability to the chromosomes.
18.5.1 Structure of a Chromosome Satellite: Some of the chromosomes have an
elongated knob-like appendage at one end
The chromosomes are thin, long and
of the chromosome known as satellite. The
thread like structures consisting of two identical
chromosomes with satellites are called as the
strands called sister chromatids. They are held
sat-chromosomes.
together by the centromere. Each chromatid is
made up of spirally coiled thin structure called
Telomeres act as aging clock
chromonema. The chromonema has number of
in every cell.
bead-like structures along its length which are
Telomeres are protective
called chromomeres. The chromosomes are
sequences of nucleotides found in
made up of DNA,RNA, chromosomal proteins
chromosomes. As a cell divides every time,
(histones and non-histones) and certain metallic
they become shorter. Telomeres get too
ions. These proteins provide structural support
short to do their job, causing our cells to age.
to the chromosome .
265 Genetics
Centromere Centromere
Short arm
Equal
Long arm
arm
Original DNA
Topoisomerase
Okazaki RNA
fragment primer Primase
Helicase
Parent DNA
It contains information required for the Now let’s see how the chromosomes take
formation of proteins. part in this formation. Fertilization of the egg
It controls the developmental process and (22+X) with a sperm (22+X) will produce a
life activities of an organism. female child (44+XX). while fertilization of the
egg (22+X) with a sperm (22+Y) will give rise
to a male child (44+XY).
18.7 Sex Determination
Points to Remember
TEXTBOOK EVALUATION
271 Genetics
V. Answer in a sentence
VII. Long answer questions
1. W hat is a cross in which inheritance of
two pairs of contrasting characters are 1.
Explain with an example the inheritance
studied? of dihybrid cross. How is it different from
monohybrid cross?
2. Name the conditions when both the alleles
are identical? 2.
How is the structure of DNA organised?
3.
A garden pea plant produces axial white What is the biological significance of DNA?
flowers. Another of the same species produced 3. The sex of the new born child is a matter of
terminal violet flowers. Identify the dominant chance and neither of the parents may be
trait? considered responsible for it. What would be
4.
What is the name given to the segments the possible fusion of gametes to determine
of DNA, which are responsible for the the sex of the child?
inheritance of a particular character?
5. Name the bond which binds the nucleotides VIII. Higher Order Thinking Skills (HOTS)
in a DNA. 1. Flowers of the garden pea are bisexual and
self-pollinated. Therefore, it is difficult to
VI. Short answers questions perform hybridization experiment by crossing
1.
Why did Mendel select pea plant for his a particular pistil with the specific pollen
experiments? grains. How Mendel made it possible in his
2.
What do you understand by the term monohybrid and dihybrid crosses?
phenotype and genotype? 2. Pure-bred tall pea plants are first crossed with
3. What are allosomes? pure-bred dwarf pea plants. The pea plants
4. What are Okazaki fragments? obtained in F1 generation are then selfed to
produce F2 generation of pea plants.
Why is euploidy considered to be
5.
advantageous to both plants and animals? a. What do the plants of F1 generation look
6. A pure tall plant (TT) is crossed with pure like?
dwarf plant (tt), what would be the F1 and F2 b. What is the ratio of tall plants to dwarf
generations? Explain. plants in F2 generation?
7. Explain the structure of a chromosome.
c.
Which type of plants were missing
8. Label the parts of the DNA in the diagram in F1 generation but reappeared in F2
given below. Explain the structure briefly. generation?
3. Kavitha gave birth to a female baby. Her family IX. Value based question
members say that she can give birth to only 1. Under which conditions does the law of
female babies because of her family history. independent assortment hold good and
Is the statement given by her family members why?
true. Justify your answer.
1.
Veer Bala Rastogi, Introductory Cytology, [Link]
Rastogi Publications, Meerut [Link] [Link]
2. P. S. Verma and V.K. Agarwal, Genetics, S. [Link]
Chand and Company, New Delhi [Link]/
3. Gerald Karp, Janet Iwasa and Wallace Marshall, [Link]
Cell and Molecular Biology - Concepts and down-syndrome/
Experiment, 8th Edition, Wiley and Sons
Publishers
Concept Map
Genetics
Mendel’s Laws
Chromosomes DNA Mutation
of Heredity
Kinds of chromosomes
•Autosomes
•Allosomes
Sex determination
inhuman
•Male (44+XY)
•Female (44+XX
273 Genetics
Learning Objectives
prevailing on earth, life arose by a series of Figure 19.1 Forelimbs of vertebrates showing
sequential chemical reactions. The first form homologous structure
of life could have come from pre-existing non-
ii. Analogous organs: The analogous
living inorganic molecules which gave rise
organs look similar and perform similar
to formation of diverse organic molecules
functions but they have different origin
which are transformed into colloid system to
produce life. The modern concept on chemical Bat wing
and developmental pattern. The function animal repeats the evolutionary history of the
of the wings of a bat, the wings of a bird entire race of the animal.
and wings of an insect are similar, but
their basic structures are different. 19.2.2 Evidences from
Palaeontology
iii. Vestigial organs: The degenerated
and non-functional organs of Palaeontology deals with
animals are called vestigial organs. the study of fossils. Leonardo
The same organs are found to be well- da Vinci is called the Father of
developed and functional, in some Palaeontology. The study of
of the related forms. Some of the fossils helps us to understand
vestigial organs in man are vermiform the line of evolution of many
appendix, nictitating membrane, invertebrates and vertebrates. Fossil records
caudal vertebra, coccyx etc. show that the evolution has taken a gradual
process from simple to complex organisms.
iv. Atavism: The reappearance of ancestral
The origin of modern birds is supported by the
characters in some individuals is called
evidences from palaeontology.
atavism. e.g. Presence of rudimentary
tail in new born babies, presence of Archaeopteryx: Archaeopteryx is the
thick hair on the human body. oldest known fossil bird. It was an early bird-
like form found in the Jurassic [Link] is
19.2.2 E
vidences from considered to be a connecting link between
Embryology reptiles and birds. It had wings with feathers,
like a bird. It had long tail, clawed digits and
The study of comparative embryology
conical teeth, like a reptile.
of different animals, supports the concept of
evolution. The embryos from fish to mammals
are similar in their early stages of development.
The differentiation of their special characters
appear in the later stages of development.
Gill-slits
Environmental change
the world, a number of islands including the remain the same. This creates an intense
Galapagos island and Pacific island. Darwin competition among the organisms for food
made elaborate observations on nature of the and space leading to struggle. The struggle
land, plants and animals of the regions he visited. for existence are of three types:
He further worked for a period of 20 years to a. Intraspecific struggle: Competition
develop the theory of natural selection. among the individuals of same species.
Darwin published his observations and b. Interspecific struggle: Competition
conclusions under the name ‘Origin of species’ between the organisms of different
in 1859. The book of Darwin demonstrates species living together.
the fact of evolution. It elaborates on the c. Environmental struggle: Natural
theory of Natural selection for evolutionary conditions like extreme heat or cold,
transformation, drought and floods can affect the
existence of organisms
Principles of Darwinism iii. Variations
i. Overproduction The occurrence of variation is a
Living beings have the ability to reproduce characteristic feature of all plants and
more individuals and form their own animals. Small variations are important
progeny. They have the capacity to for evolution. According to Darwin
multiply in a geometrical manner. This will favourable variations are useful to the
organism and unfavourable variations are
increase reproductive potential leading to
harmful or useless to the organism.
overproduction.
iv. Survival of the fittest or Natural selection
ii. Struggle for existence
During the struggle for existence, the
Due to over production, a geometric ratio
organisms which can overcome the
of increase in population occurs. The space
challenging situation, survive and adapt to
to live and food available for the organisms
Overproduction
Variations
Inheritance of acquired
characters
Gradual accumulation of
favourable characters
Kaspar Maria Von Sternberg bed and are covered by sediment. The process
He is the “Father of Paleobotany” (1761– of sedimentation goes on continuously and
1838) was born in Europe. He established the fossils are formed.
Bohemian National Museum in Prague and is
Infiltration or Replacement
deemed to be the founder of Modern Paleobotany.
The precipitation of minerals takes place
Birbal Sahani which later on infiltrate the cell wall. The
He is the “Father of Indian Paleobotany” process is brought about by several mineral
(1891–1949). He presented his research on two elements such as silica, calcium carbonate
different areas of Paleobotany (i) The anatomy and magnesium carbonate. Hard parts are
and morphology of Paleozoic Ferns (ii) The fossil dissolved and replaced by these minerals.
plants of the Indian Gondwana Formations.
Living Fossils: These are living
19.5.1 Fossilization
organisms that are similar in
The process of formation of fossil in the appearance to their fossilized
rocks is called fossilization. distant ancestors and usually have no
Common methods of fossilization includes extinct close features. e.g. Ginko biloba.
petrifaction, molds and cast, carbonization,
preservation, compression and infiltration.
19.5.2 Determination of age of
Petrifaction Fossils
Minerals like silica slowly penetrate in and The age of fossils is determined by radioactive
replace the original organic tissue and forms elements present in it. They may be carbon,
a rock like fossil. This method of fossilization uranium, lead or potassium. It is used in
can preserve hard and soft parts. Most bones paleobotany and anthropology for determining
and wood fossils are petrified. the age of human fossils and manuscripts.
Mold and Cast Radioactive carbon(C14) dating method
A replica of a plant or animal is preserved This method was discovered by
in sedimentary rocks. When the organism W.F. Libby (1956). Carbon consumption of
gets buried in sediment it is dissolved by animals and plants stops after death and since
underground water leaving a hollow depression then, only the decaying process of C14 occurs
called a mold. It shows the original shape continuously. The time passed since death of a
but does not reveal the internal structure. plant or animal can be calculated by measuring
Minerals or sediment fill the hollow depression the amount of C14. present in their body.
and forms a cast.
Preservation More to Know
Original remains can be preserved in What is the Geologic Time Scale?
ice or amber (tree sap). They protect the The geological time scale is a system of
organisms from decay. The entire plant or chronological dating that relates geological
animal is preserved. rock strata to time, and is used by geologists,
Compression paleontologists, and other Earth scientists to
describe the timing and relationships of events
When an organism dies, the hard parts
that have occurred during Earth’s history.
of their bodies settle at the bottom of the sea
Figure 19.5 Microbial diversity from sandstone and granite from the McMurdo Dry Valleys, Antarctica
TEXTBOOK EVALUATION
I Choose the correct answer 2. The ‘use and disuse theory’ was proposed
1. Biogenetic law states that ______________ by ______________.
d.
There is no relationship between d. Gregor Mendel
phylogeny and ontogeny
10th Standard Science 282
IX Higher Order Thinking Skills (HOTS) 2. Stephen. C. Stearns and Rolf. F. Hoekstra
1. Arun was playing in the garden. Suddenly Evolution - An introduction
he saw a dragon fly sitting on a plant. He 3. Archer, S.D.J., Asuncion de los, R., Lee,
observed the wings of it. He thought it K.C., Niederberger, T.S., Cary, S.C.,
looked similar to a wing of a crow. Is he Coyne, K.J., Douglas, S., Lacap-Bugler,
correct? Give reason for your answer. D.C. and Pointing, S.B., 2017. A Endolithic
2. Imprints of fossils tell us about evolution- microbial diversity in sandstone and
How? granite from the McMurdo Dry Valleys,
3. Octopus, cockroach and frog all have eyes. Antarctica. Polar biology, 40 (5): 997-1006.
Can we group these animals together to
establish a common evolutionary origin.
Justify your answer. I NT ER NET R ES O U RCES
[Link]
REFERENCE BOOKS
[Link]
1.
B. [Link] and S. P. Singh, An Introduction exobiology/
to General Biology, 9th Edition, Rastogi
[Link]
Publications, Meerut.
Concept Map
Evolution
Paleontology
•Fossils
Ethnobotany
Importance of ethnobotany
Petrifaction
Evolution
Mold and cast
Fossilization Preservation
Compression
Paleobotany Replacement
Cells alive
[Link]
BREEDING
20 AND
BIOTECHNOLOGY
Learning Objectives
yielding crop varieties and modern agricultural Peta from Indonesia, and Dee-geo-woo-gen
techniques in underdeveloped and developing (DGWG) a dwarf variety from China.
nations. Dr. Norman E. Borlaug, an American
agronomist the “Father of the Green
Revolution”, received the Nobel Peace Prize in
1970. In India Dr. M. S. Swaminathan joined
with [Link] in bringing Green Revolution
by introducing Mexican wheat varieties. This
eventually increased wheat and rice production
between 1960 and 2000.
Figure 20.1 IR-8
20.2.1 Breeding for high yield
and better quality More to Know
Major challenge that India faced during
Dr. G. Nammalvar
post-independance period was having
Dr. G. Nammalvar (1938-2013)
enough food production for the growing
was a Tamil agricultural
population. Efforts were taken to develop
scientist, environmental
high yielding varieties of crops, leading to
activist and organic farming
Green Revolution.
expert. He founded Nammalvar Ecological
Semi-Dwarf varieties in Wheat and Rice Foundation for Farm Research and Global
Sonalika, Kalyan Sona are semi-dwarf Food Security Trust (NEFFFRGFST-
varieties of wheat developed from high- Vanagam) to create public awareness about
yielding, semi-dwarf, fertilizer responsive the benefits of organic farming.
wheat varieties from Mexico. IR-8 (Miracle
rice) is a high-yielding semi-dwarf rice variety
20.2.2 Plant Breeding for
developed by International Rice Research
Disease Resistance
Institute (IRRI),Philippines. In 1966, this was
first introduced in Philippines and India. It Plant diseases are caused by pathogens like
was a hybrid of a high yielding rice variety viruses, bacteria and fungi. This affects crop
yield. Hence, it is important to develop disease
More to Know resistant varieties of crops, that would increase
the yield and reduce the use of fungicides and
Dr. M. S. Swaminathan bactericides. Some disease resistant varieties
Dr. Mankombu Sambasivan developed by plant breeding are given below:
Swaminathan is an Indian
scientist known for his Table 20.1 Disease resistant crop varieties
leading role in India’s Green Crop Variety Resistance to
Revolution. His research on diseases
potato, wheat, rice and jute are well known
Wheat Himgiri Leaf and stipe
plant breeding experiments. Due to his
rust, hill bunt
efforts the wheat production increased from
twelve million tonnes in 1960's to seventy Cauliflower Pusa Shubhra, Black rot
million tonnes now. He is aptly called as the Pusa Snowball K-1
“Father of Indian Green Revolution”. Cowpea Pusa Komal Bacterial blight
Table 20.2 Insects /pests resistant varieties Figure 20.2 Protina–lysine rich Maize
20.4.1 Inbreeding
Inbreeding refers to the mating of closely
Figure 20.6 Cross breeding to produce Mule
related animals within the same breed for
with superior characters
about 4-6 generations. Superior males and
superior females of the same breed are identified Info bits
and mated in pairs. It helps in the accumulation
of superior genes and elimination of genes Cross breed of fowls:
which are undesirable. White Leghorn X Plymouth Rock
Hissardale is a new breed of sheep
developed in Punjab by crossing Bikaneri Hybrid fowl - yield more eggs
(Magra) ewes and Australian Marino rams.
Cross breed of cows:
Inbreeding depression: Continued inbreeding Developed by mating the bulls of exotic
reduces fertility and productivity. Inbreeding breeds and cows of indigenous breeds.
exposes harmful recessive genes that are
Brown Swiss X Sahiwal
eliminated by selection.
20.5.1 Techniques of Genetic
Engineering – Basic
Requirements
Important discoveries that led to the Figure 20.7 Genetic engineering technique
stepping stone of rDNA technology were (Gene cloning)
10th Standard Science 292
Gene Therapy
Gene therapy refers to the replacement
of defective gene by the direct transfer of
functional genes into humans to treat genetic
disease or disorder. The genetic makeup of
the ‘patient’ cell is altered using recombinant
DNA technology. It was first successfully
implemented in 1990.
Somatic gene therapy is the replacement
Surrogate of defective gene in somatic cells.
mother (with
implanted
embryo)
Germ line gene therapy replacement of
defective gene in germ cell (egg and sperm).
Gene therapy conducted till date has
targeted only somatic (non-reproductive)
cells. Correction of genetic defects in somatic
cells may be beneficial to the patient but the
20.6 Biotechnology in Medicine corrected gene may not be carried to the next
generation.
Using genetic engineering techniques
medicinally important valuable proteins 20.7 Stem Cells
or polypeptides that form the potential
pharmaceutical products for treatment of Our body is composed of over 200
various diseases have been developed on a specialised cell types, that can carry out specific
commercial scale. functions. e.g. neurons or nerve cell that can
Pharmaceutical products developed by transmit signals, or heart cells which contract
rDNA technique to pump blood or pancreatic cells to secrete
insulin. These specialised cells are called as
a. Insulin used in the treatment of diabetes.
differentiated cells.
b. Human growth hormone used for treating
In contrast to differentiated cells, stem
children with growth deficiencies.
cells are undifferentiated or unspecialised
c. Blood clotting factors are developed to mass of cells. The stem cells are the cells of
treat haemophilia.
293 Breeding and Biotechnology
variable potency. Potency refers to the number Parkinson’s disease and Alzheimer’s disease
of possible fates that a cell can acquire. The neuronal stem cells can be used to replace the
two important properties of stem cells that damaged or lost neurons.
differentiate them from other cells are:
i. its ability to divide and give rise to more 20.8 DNA Fingerprinting
stem cells by self-renewal Technology
ii. its ability to give rise to specialised cells The human genome has 3 billion base
with specific functions by the process of pairs. Did you know that the DNA pattern
differentiation. of two individuals cannot be same except for
identical twins. Each person’s DNA sequence
Types of stem cells is unique due to the small difference in the base
Embryonic stem cells can be extracted pairs. Therefore, if we want to compare the
genetic difference among the two individuals,
and cultured from the early embryos. These
DNA fingerprinting is the easier and quicker
cells are derived from the inner cell mass of
method. This technique was developed by
blastocyst. These cells can be developed into
Alec Jeffrey.
any cell in the body.
The technique analyses each individual’s
Adult stem cell or somatic stem cell are
unique DNA sequences and provides
found in the neonatal (new born) and adults.
distinctive characteristics of individual which
They have the ability to divide and give rise to
helps in identification. Variable number of
specific cell types. Sources of adult stem cells tandem repeat sequences (VNTRs) serve as
are amniotic fluid, umbilical cord and bone molecular markers for identification.
marrow.
In human beings, 99 % of the DNA base
sequences are the same and this is called
as bulk genomic DNA. The remaining 1 %
DNA sequence differs from one individual to
another. This 1 % DNA sequence is present
as small stretch of repeated sequences which
is known as satellite DNA. The number of
copies of the repeat sequence also called
as VNTRs differs from one individual to
another, and results in variation in the size of
the DNA segment.
Stem-cell therapy
Sometimes cells, tissues and organs in the
body may be permanently damaged or lost due
to genetic condition or disease or injury. In such VNTRs illustration of three persons
situations stem cells are used for the treatment
As shown in the illustration, the sequence
of diseases which is called stem-cell therapy.
AGCT is repeated six times in first person, five
In treating neurodegenerative disorders like
times in second person and seven times in third
person. Because of this, DNA segment of third genetically modified (GM) plants and animals.
person will be larger in size followed by DNA Genetic modification refers to the alteration
segment of first person and then the second or manipulation of genes in the organisms
person. Thus, it is clear that satellite DNA using rDNA techniques in order to produce
bring about variation within the population. the desired characteristics. The DNA fragment
Variation in DNA banding pattern reveals
inserted is called transgene. Plants or animals
differences among the individuals.
expressing a modified endogenous gene or
Applications of DNA Fingerprinting a foregin gene are also known as transgenic
i. DNA fingerprinting technique is widely organisms.
used in forensic applications like crime The transgenic plants are much stable,
investigation such as identifying the with improved nutritional quality, resistant to
culprit. It is also used for paternity testing diseases and tolerant to various environment
in case of disputes. conditions. Similarly transgenic animals
ii. It also helps in the study of genetic diversity are used to produce proteins of medicinal
of population, evolution and speciation. importance at low cost and improve livestock
quality.
20.9 Genetically Modified Some examples of genetically modified
Organisms (GMOs) plants and animals are given in the table
One of the most tremendous development below.
of genetic engineering is the production of
Improved wool quality Genes for synthesis of amino acid, Transgenic sheep
and production cysteine (gene expressed)
TEXTBOOK EVALUATION
10. In a hexaploid wheat( 2n = 6 x = 42 ) the 4. Iron fortified rice variety determines the
haploid (n) and the basic(x) number of protein quality of the cultivated plant
chromosomes respectively are 5. Golden rice is a hybrid.
a. n = 7 and x = 21 b. n = 21 and x = 21 6. Bt gene from bacteria can kill insects.
c. n = 7 and x = 7 d. n = 21 and x = 7 7. In vitro fertilisation means the fertilisation
II Fill in the blanks done inside the body.
1. Economically important crop plants with 8. DNA fingerprinting technique was
superior quality are raised by_________. developed by Alec Jeffrey.
9. Molecular scissors refers to DNA ligases.
2. A protein rich wheat variety is ________.
3. __________is the chemical used for
IV Match the following
doubling the chromosomes.
Column A Column B
4. The scientific process which produces crop
plants enriched with desirable nutrients is 1. Sonalika Phaseolus mungo
called __________. 2. IR 8 Sugarcane
5. Rice normally grows well in alluvial soil, 3. Saccharum Semi-dwarf wheat
but _________ is a rice variety produced 4. Mung No. 1 Ground nut
by mutation breeding that grows well in 5. TMV – 2 Semi-dwarf Rice
saline soil.
6. Insulin Bacillus thuringienesis
6. __________ technique made it possible to 7. Bt toxin Beta carotene
genetically engineer living organism.
8. Golden rice first hormone produced
7. Restriction endonucleases cut the DNA using rDNA technique
molecule at specific positions known as
__________. V
Understand the assertion statement,
justify the reason given and choose the
8. Similar DNA fingerprinting is obtained
correct choice
for __________.
a. Assertion is correct and reason is wrong
9. __________ cells are undifferentiated b. Reason is correct and the assertion is
mass of cells. wrong
10. In gene cloning the DNA of interest is c. Both assertion and reason is correct
integrated in a __________. d. Both assertion and reason is wrong.
1. Assertion: Hybrid is superior than either
III State whether true or false. If false, write
of its parents.
the correct statement
Reason: Hybrid vigour is lost upon
1. Raphano brassica is a man-made tetraploid inbreeding.
produced by colchicine treatment. 2. Assertion: Colchicine reduces the
2. The process of producing an organism chromosome number.
with more than two sets of chromosome Reason: It promotes the movement of
is called mutation. sister chromatids to the opposite poles.
3. A group of plants produced from a single 3. Assertion: rDNA is superior over
plant through vegetative or asexual hybridisation techniques.
reproduction are called a pureline.
Reason: Desired genes are inserted 2. Describe mutation breeding with an example.
without introducing the undesriable 3. Biofortification may help in removing
genes in target organisms. hidden hunger. How?
4. With a neat labelled diagram explain the
VI Answer in a sentence
techniques involved in gene cloning.
1. Give the name of wheat variety having
5. Discuss the importance of biotechnology
higher dietary fibre and protein.
in the field of medicine.
2. Semi-dwarf varieties were introduced
in rice. This was made possible by the IX Higher Order Thinking Skills (HOTS)
presence of dwarfing gene in rice. Name
1. A breeder wishes to incorporate desirable
this dwarfing gene.
characters into the crop plants. Prepare a
3. Define genetic engineering.
list of characters he will incorporate
4. Name the types of stem cells.
5. What are transgenic organisms? 2. Organic farming is better than Green
6. State the importance of biofertiliser. Revolution. Give reasons
3. Polyploids are characterised by gigantism.
VII Short answers questions
Justify your answer.
1. Discuss the method of breeding for disease
4. ‘P’ is a gene required for the synthesis of
resistance.
vitamin A. It is integrated with genome of
2. Name three improved characteristics of
‘Q’ to produce genetically modified plant ‘R’.
wheat that helped India to achieve high
productivity. i. What is P, Q and R?
3. Name two maize hybrids rich in amino ii. State the importance of ‘R’ in India.
acid lysine
4. Distinguish between REFERENCE BOOKS
a. somatic gene therapy and germ line
gene therapy 1. Chaudhari, H.K., Elementary Principles
b. undifferentiated cells and differentiated of Plant Breeding, 2nd Edition.
cells 2. Dubey, R.C., A Text book of Biotechnology.
5. State the applications of DNA fingerprinting 5th Edition. S. Chand and Company Pvt. Ltd.
technique. NewDelhi.
6. How are stem cells useful in regenerative
process?
I NT ER NET R ES O U RCES
7. Differentiate between outbreeding and [Link]
inbreeding. cow-rosie-concept
VIII Long answers questions [Link]
1. What are the effects of hybrid vigour in [Link]
animals. at shoots-potato-in-roots
Concept Map
Plant Breeding
Disease Insects/
resistance pests resistance
Improved
High yield Green Revolution nutritional quality
Methods
Natural Selection Hybridization
Recombinant Genetically
DNA (rDNA) modified plants
and animals
(Transgenics)
5
UNIT - II
Molecular
Genetics
CHAPTER
M
5.3 DNA is the genetic material endel’s theory dispelled the mystery
5.4 Chemistry of nucleic acids
of why traits seemed to appear and
5.5 RNA world
5.6 Properties of genetic material disappear magically from one generation to
5.7 Packaging of DNA helix the next. Mendel’s work reveals the patterns of
5.8 DNA Replication heredity and reflect the transmission of evolved
5.9 Transcription information from parents to offspring. This
5.10 Genetic code information is located on the chromosomes.
5.11 tRNA – the adapter molecule One of the most advanced realizations of
5.12 Translation
human knowledge was that our unique
5.13 Regulation of Gene expression
5.14 Human Genome Project (HGP) characteristics are encoded within molecules
5.15 DNA finger printing technique of DNA. The discovery that DNA is the genetic
material left several questions unanswered.
How is the information in DNA used? Scientists
Learning Objectives
now know that DNA directs the construction
➢ Identifies DNA as the genetic material. of proteins. Proteins determine the shapes of
➢ Understands the organization of prokaryotic cells and the rate of chemical reactions, such
and eukaryotic genome. as those that occur during metabolism and
➢ Learns to differentiate the nucleotides of DNA photosynthesis. The hereditary nature of every
and RNA. living organism is defined by its genome,
➢ Understands gene expression - which consists of a long sequence of nucleic
Replication, Transcription and
acids that provide the information needed to
Translation.
construct the organism. The genome contains
➢ Learns about codons and the
salient features of genetic code. the complete set of hereditary information for
➢ Understands the gene regulation any organism. The genome may be divided into
through Lac operon model. a number of different nucleic acid molecules.
➢ Realizes the importance of Human Genome Each of the nucleic acid molecule may contain
Project. large number of genes. Each gene is a sequence
➢ Illustrates the applications of DNA finger within the nucleic acid that represents a single
printing technique.
protein. In this chapter we will discuss the
61 Molecular Genetics
Molecular Genetics 62
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to identify the nature of the transforming proteases (an enzyme which destroys protein)
substance responsible for converting a non- did not affect the transformation. Digestion
virulent strain into virulent strain. They with DNase inhibited transformation
observed that the DNA, RNA and proteins suggesting that the DNA caused the
isolated from the heat-killed S-strain transformation. These experiments suggested
when added to R-strain changed their that DNA and not proteins is the genetic
surface character from rough to smooth material. The phenomenon, by which DNA
and also made them pathogenic (Fig. 5.1). isolated from one type of cell (S – strain),
But when the extract was treated with when introduced into another type (R-strain),
DNase (an enzyme which destroys DNA) is able to retain some of the properties of the
the transforming ability was lost. RNase S - strain is referred to as transformation.
(an enzyme which destroys RNA) and
63 Molecular Genetics
Infection
Blending
Centrifugation
5.3 DNA is the genetic material phages (virus) are added to bacteria, they
Many biologists despite the earlier adsorb to the outer surface, some material
experiments of Griffith, Avery and others, enters the bacterium, and then later each
still believed that protein, not DNA, was the bacterium lyses to release a large number of
hereditary material in a cell. As eukaryotic progeny phage. Hershey and Chase wanted to
chromosomes consist of roughly equal observe whether it was DNA or protein that
amounts of protein and DNA, it was said entered the bacteria. All nucleic acids contain
that only a protein had sufficient chemical phosphorus, and proteins contain sulphur
diversity and complexity to encode the (in the amino acid cysteine and methionine).
information required for genetic material. Hershey and Chase designed an experiment
In 1952, however, the results of the using radioactive isotopes of Sulphur (35S)
Hershey-Chase experiment finally provided and phosphorus (32P) to keep separate track of
convincing evidence that DNA is the genetic the viral protein and nucleic acids during the
material. infection process. The phages were allowed
5.3.1 Hershey and Chase experiment to infect bacteria in culture medium which
on T2 bacteriophage containing the radioactive isotopes 35S or 32P.
The bacteriophage that grew in the presence of
Alfred Hershey and Martha Chase (1952) 35
S had labelled proteins and bacteriophages
conducted experiments on bacteriophages
grown in the presence of 32P had labelled DNA.
that infect bacteria. Phage T2 is a virus that
infects the bacterium Escherichia coli. When
Molecular Genetics 64
65 Molecular Genetics
components of adjacent nucleotides are called separated RNA from the protein of TMV
phosphodiester bond (5' 3'), indicating viruses. Three molecular biologists in the early
the polarity of the strand. 1980’s (Leslie Orgel, Francis Brick and Carl
The ends of the DNA or RNA are distinct. Woese) independently proposed the ‘RNA
The two ends are designated by the symbols world’ as the first stage in the evolution of
5' and 3'. The symbol 5' refers to carbon in the life, a stage when RNA catalysed all molecules
sugar to which a phosphate (PO4) functional necessary for survival and replication. The
group is attached. The symbol 3' refers to term ‘RNA world’ first used by Walter Gilbert
carbon in the sugar to which hydroxyl (OH) in 1986, hypothesizes RNA as the first genetic
functional group is attached. In RNA, every material on earth. There is now enough
nucleotide residue has an additional –OH evidence to suggest that essential life processes
group at 2' position in the ribose. (such as metabolism, translation, splicing etc.,)
Understanding the 5' 3' direction of a evolved around RNA. RNA has the ability to act
nucleic acid is critical for understanding the as both genetic material and catalyst. There are
aspects of replication and transcription. several biochemical reactions in living systems
Based on the X - ray diffraction analysis of that are catalysed by RNA. This catalytic
Maurice Wilkins and Rosalind Franklin, the RNA is known as ribozyme. But, RNA being
double helix model for DNA was proposed by a catalyst was reactive and hence unstable.
James Watson and Francis Crick in 1953. The This led to evolution of a more stable form of
highlight was the base pairing between the DNA, with certain chemical modifications.
two strands of the polynucleotide chain. This Since DNA is a double stranded molecule
proposition was based on the observations having complementary strand, it has resisted
of Erwin Chargaff that Adenine pairs with changes by evolving a process of repair. Some
Thymine (A = T) with two hydrogen bonds RNA molecules function as gene regulators by
and Guanine pairs with Cytosine (G ≡ C) binding to DNA and affect gene expression.
with three hydrogen bonds. The ratios Some viruses use RNA as the genetic material.
between Adenine with Thymine and Guanine Andrew Fire and Craig Mellow (recipients of
with Cytosine are constant and equal. The Nobel Prize in 2006) were of the opinion that
base pairing confers a unique property to RNA is an active ingredient in the chemistry of
the polynucleotide chain. They are said to be life. The types of RNA and their role have been
complementary to each other, that is, if the discussed in class XI.
sequence of bases in one strand (template) is
known, then the sequence in the other strand 5.6 Properties of genetic material
can be predicted. The salient features of DNA The experiment by Hershey and Chase
structure has already been dealt in class XI. clearly indicates that it is DNA that acts
as a genetic material. However, in some
5.5 RNA world viruses like Tobacco mosaic virus (TMV),
A typical cell contains about ten times as bacteriophage θB, RNA acts as the genetic
much RNA as DNA. The high RNA content material. A molecule that can act as a genetic
is mainly due to the variety of roles played by material should have the following properties:
RNA in the cell. Fraenkel-Conrat and Singer S elf Replication: It should be able to
•
(1957) first demonstrated that RNA is the replicate. According to the rule of base
genetic material in RNA containing viruses pairing and complementarity, both nucleic
like TMV (Tobacco Mosaic Virus) and they acids (DNA and RNA) have the ability to
Molecular Genetics 66
direct duplications. Proteins fail to fulfill RNA genome with shorter life span can
this criteria. mutate and evolve faster.
• Stability: It should be stable structurally and The above discussion indicates that both
chemically. The genetic material should be RNA and DNA can function as a genetic
stable enough not to change with different material. DNA is more stable, and is preferred
stages of life cycle, age or with change in for storage of genetic information.
physiology of the organism. Stability as one
of property of genetic material was clearly 5.7 Packaging of DNA helix
evident in Griffith’s transforming principle.
The distance between two consecutive
Heat which killed the bacteria did not
base pairs is 0.34nm (0.34×10-9m) of the
destroy some of the properties of genetic
DNA double helix in a typical mammalian
material. In DNA the two strands being
cell. When the total number of base pairs is
complementary, if separated (denatured) by
multiplied with the distance between two
heating can come together (renaturation)
consecutive base pairs (6.6 × 109 × 0.34 ×10-9
when appropriate condition is provided.
m/bp), the length of DNA double helix is
Further 2' OH group present at every
approximately 2.2 m. (The total length of the
nucleotide in RNA is a reactive
group that makes RNA liable and
$
easily degradable. RNA is also
known to be catalytic and reactive.
Hence, DNA is chemically more
stable and chemically less reactive
when compared to RNA. Presence 1XFOHRVRPH
of thymine instead of uracil in &RUH'1$
to DNA. /LQNHU'1$
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• Information storage: It should be
able to express itself in the form
of ‘Mendelian characters’. RNA $
can directly code for protein $ &
synthesis and can easily express '
67 Molecular Genetics
double helical DNA = total number of base octameres and the two turns are sealed off by
pairs × distance between two consecutive an H1 molecule. Chromatin lacking H1 has a
base pairs). If the length of E. coli DNA is beads-on-a-string appearance in which DNA
1.36 mm, the number of base pairs in E. coli is enters and leaves the nucleosomes at random
4 ×106bp (1.36 × 103 m/0.34 ×10-9). The places. H1 of one nucleosome can interact
length of the DNA double helix is far greater with H1 of the neighbouring nucleosomes
than the dimension of a typical mammalian resulting in the further folding of the fibre.
nucleus (approximately 10-6 m). How is such a The chromatin fiber in interphase nuclei and
long DNA polymer packaged in a cell? mitotic chromosomes have a diameter that
Chromosomes are carriers of genes which vary between 200-300 nm and represents
are responsible for various characters from inactive chromatin. 30 nm fibre arises from the
generation to generation. Du Praw (1965) folding of nucleosome, chains into a solenoid
proposed a single stranded model (unineme), structure having six nucleosomes per turn. This
as a long coiled molecule which is associated structure is stabilized by interaction between
with histone proteins in eukaryotes. Plants different H1 molecules. DNA is a solenoid and
and animals have more DNA than bacteria packed about 40 folds. The hierarchical nature
and must fold this DNA to fit into the cell of chromosome structure is illustrated in
nucleus. In prokaryotes such as E. coli though (Fig. 5.3). Additional set of proteins are
they do not have defined nucleus, the DNA required for packing of chromatin at higher
is not scattered throughout the cell. DNA level and are referred to as non-histone
(being negatively charged) is held with some chromosomal proteins (NHC). In a typical
proteins (that have positive charges) in a nucleus, some regions of chromatin are
region called the nucleoid. The DNA as a loosely packed (lightly stained) and are
nucleoid is organized into large loops held referred to as euchromatin. The chromatin
by protein. DNA of prokaryotes is almost that is tightly packed (stained darkly) is
circular and lacks chromatin organization, called heterochromatin. Euchromatin is
hence termed genophore. transcriptionally active and heterochromatin
is transcriptionally inactive.
In eukaryotes, this organization is much more
complex. Chromatin is formed by a series of
repeating units called nucleosomes. Kornberg 5.8 DNA Replication
proposed a model for the nucleosome, in Replication of DNA takes place during the
which 2 molecules of the four histone proteins S phase of cell cycle. During replication, each
H2A, H2B, H3 and H4 are organized to DNA molecule gives rise to two DNA strands,
form a unit of eight molecules called histone identical to each other as well as to the parent
octamere. The negatively charged DNA strand. Three hypotheses of DNA replication
is wrapped around the positively charged have been proposed. They are conservative
histone octamere to form a structure called replication, dispersive replication, and semi-
nucleosome. A typical nucleosome contains conservative replication.
200 bp of DNA helix. The histone octameres In conservative replication, the original
are in close contact and DNA is coiled on double helix serves as a template. The original
the outside of nucleosome. Neighbouring molecule is preserved intact and an entirely
nucleosomes are connected by linker DNA new double stranded molecule is synthesized.
(H1) that is exposed to enzymes. The DNA In dispersive replication, the original molecule
makes two complete turns around the histone is broken into fragments and each fragment
Molecular Genetics 68
3' 5'
Semi-conservative replication was
T A
proposed by Watson and Crick in 1953. This
C G mechanism of replication is based on the
A T
Parent DNA model. They suggested that the two
C G polynucleotide strands of DNA molecule
C G
G C unwind and start separating at one end.
T A
During this process, covalent hydrogen bonds
C G are broken. The separated single strand then
T A
C G acts as template for the synthesis of a new
T A
strand. Subsequently, each daughter double
T A
Parental Parental helix carries one polynucleotide strand from
A T
strand A T strand the parent molecule that acts as a template
C 3' 5' C
C G C G
and the other strand is newly synthesised
G C and complementary to the parent strand
G C TA
T A (Fig. 5.4).
C G
C G T A
T A
T A
C G C G 5.8.1 Experimental proof of
A T
T A
DNA replication
T A
A T A T The mode of DNA replication was
5'
3'
3'
determined in 1958 by Meselson and Stahl.
5'
They designed an experiment to distinguish
Daughter
strands between semi conservative, conservative and
dispersive replications. In their experiment,
Fig. 5.4 Semiconservative DNA replication they grew two cultures of [Link] for many
serves as a template for the synthesis of generations in separate media. The ‘heavy’
complementary fragments. Finally two new culture was grown in a medium in which
molecules are formed which consist of both the nitrogen source (NH4Cl) contained the
old and new fragments. heavy isotope 15N and the ‘light’ culture was
grown in a medium in which the nitrogen
Generation I Generation II
15 14
N-DNA N-DNA 14
N-DNA
15
N-DNA 15
N-DNA
14
20 min 40 min N-DNA
14
Gravitational force N-DNA
15 15 14 15 14 14 14 15
N N N N N N N N
Heavy Hybrid Light Hybrid
Fig. 5.5 Meselson and Stahl experiment to support semiconservative mode of DNAreplication
69 Molecular Genetics
source contained light isotope 14N for many to mutation. However replication errors are
generations. At the end of growth, they corrected by repair enzymes such as nucleases.
observed that the bacterial DNA in the heavy Deoxy nucleotide triphosphate acts as substrate
culture contained only 15N and in the light and also provides energy for polymerization
culture only 14N. The heavy DNA could be reaction.
distinguished from light DNA (15N from 14N) Replication begins at the initiation site called
with a technique called Cesium Chloride the site of ‘origin of replication’ (ori). In
(CsCl) density gradient centrifugation. In prokaryotes, there is only one origin of
this process, heavy and light DNA extracted replication, whereas in eukaryotes with giant
from cells in the two cultures settled into two DNA molecules, there can be several origins of
distinct and separate bands (hybrid DNA) replication (replicons). Since the two strands of
(Fig. 5.5). DNA cannot be separated throughout at a time
The heavy culture (15N) was then transferred (due to large requirement of energy) the
into a medium that had only NH4Cl, and took replication occurs within a small opening of the
samples at various definite time intervals DNA helix called as replication fork. Unwinding
(20 minutes duration). After the first replication, of the DNA strand is carried out by DNA
they extracted DNA and subjected it to density helicase. Thus, in one strand (template strand
gradient centrifugation. The DNA settled with polarity 3' 5') the replication is
into a band that was intermediate in position continuous and is known as the leading strand
between the previously determined heavy while in the other strand (coding strand with
and light bands. After the second replication polarity 5' 3') replication is discontinuous,
(40 minutes duration), they again extracted known as the lagging strand (Fig. 5.6). The
DNA samples, and this time found the DNA discontinuously synthesized fragments of the
settling into two bands, one at the light band lagging strand (called the Okazaki fragments)
position and one at intermediate position. are joined by the enzyme DNA ligase.
These results confirm Watson and Crick’s semi
conservative replication hypothesis.
Molecular Genetics 70
As they move away in both directions, newly of information is reversed. RNA synthesizes
synthesized complementary nucleotides are DNA by reverse transcription, then transcribed
paired with the existing nucleotides on the into mRNA by transcription and then into
parent strand and covalently bonded together proteins by translation.
by DNA polymerase. Formation of new strand For a cell to operate, its genes must be
requires a primer (a short stretch of RNA)for expressed. This means that the gene products,
initiation. The primer produces a 3'-OH end on whether proteins or RNA molecules must be
the sequence of ribonucleotides, to which deoxy made. The RNA that carries genetic information
ribonucleotides are added. The RNA primer is encoding a protein from genes into the cell is
ultimately removed leaving a gap in the newly known as messenger RNA (mRNA). For a gene
synthesized DNA strand. It is removed from to be transcribed, the DNA which is a double
5' end one by one by the exonuclease activity helix must be pulled apart temporarily, and
of DNA polymerase. Finally, when all the RNA is synthesized by RNA polymerase. This
nucleotides are in position, gaps are sealed by enzyme binds to DNA at the start of a gene and
the enzyme DNA ligase. opens the double helix. Finally, RNA molecule
is synthesized. The nucleotide sequence in the
At the point of origin of replication, the
RNA is complementary to the DNA template
helicases and topoisomerases (DNA gyrase)
strand from which it is synthesized.
unwind and pull apart the strands, forming a
Y-Shaped structure called the replication fork. Both the strands of DNA are not copied
There are two replication forks at each origin. during transcription for two reasons. 1. If both
The two strands of a DNA helix have an the strands act as a template, they would code
antiparallel orientation. The enzyme DNA for RNA with different sequences. This in turn
polymerase can only catalyse the addition of a would code for proteins with different amino
nucleotide to the new strands in the 5' 3' acid sequences. This would result in one segment
of DNA coding for two different proteins, hence
direction, as it can only add nucleotides to the
complicate the genetic information transfer
3' carbon position.
machinery. 2. If two RNA molecules were
5.9 Transcription produced simultaneously, double stranded RNA
Francis Crick proposed the Central dogma complementary to each other would be formed.
of protein synthesis in molecular biology This would prevent RNA from being translated
states that genetic information flows as into proteins.
follows: 5.9.1 Transcription unit and gene
A transcriptional unit in DNA is defined by
three regions, a promoter, the structural gene
and a terminator. The promoter is located
towards the 5' end of the coding strand. It is a
DNA sequence that provides binding site for
RNA polymerase. The presence of promoter
The process of copying genetic information in a transcription unit, defines the template
from one strand of DNA into RNA is and coding strands. The terminator region
termed transcription. This process takes located towards the 3' end of the coding strand
place in presence of DNA dependent RNA contains a DNA sequence that causes the RNA
polymerase. In some retroviruses that contain polymerase to stop transcribing. In eukaryotes
the promoter has AT rich regions called
RNA as the genetic material (e.g, HIV), the flow
TATA box (Goldberg-Hogness box) and in
71 Molecular Genetics
Molecular Genetics 72
Initiation
3' 3'
5' 5'
Promoter σ RNA polymerase DNA helix
Sigma factor
polymerase found in the
Elongation organelles). There is a clear
division of labour. The RNA
3' 3'
polymerase I transcribes
5' 3' rRNAs (28S, 18S and
Terminator
RNA σ 5.8S), whereas the RNA
polymerase III is responsible
Termination for transcription of tRNA,
3' 3'
5S rRNA and snRNA.
The RNA polymerase
5' 5'
II transcribes precursor
Rho factor ρ of mRNA, the hnRNA
RNA (heterogenous nuclear
RNA Polymerase RNA). In eukaryotes, the
Fig. 5. 8 Process of transcription in prokaryotes monocistronic structural
genes have interrupted coding sequences
polymerase is only capable of catalyzing the known as exons (expressed sequences) and non-
process of elongation. The RNA polymerase coding sequences called introns (intervening
associates transiently with initiation factor sigma sequences). The introns are removed by a process
(σ) and termination factor rho (r) to initiate called splicing. hnRNA undergoes additional
and terminate the transcription, respectively. processing called capping and tailing. In capping
Association of RNA with these factors instructs an unusual nucleotide, methyl guanosine
the RNA polymerase either to initiate or triphosphate is added at the 5' end, whereas
terminate the process of transcription (Fig. 5.8). adenylate residues (200-300) (Poly A) are added
at the 3' end in tailing (Fig. 5.9). Thereafter,
In bacteria, since the mRNA does not
this processed hnRNA, now called mRNA is
require any processing to become active
transported out of the nucleus for translation.
and also since transcription and translation
take place simultaneously in the same The split gene feature of eukaryotic genes
compartment (since there is no separation of is almost entirely absent in prokaryotes.
cytosol and nucleus in bacteria), many times Originally each exon may have coded for
the translation can begin much before the a single polypeptide chain with a specific
mRNA is fully transcribed. This is because function. Since exon arrangement and intron
the genetic material is not separated from removal are flexible, the exon coding for
other cell organelles by a nuclear membrane these polypeptide subunits act as domains
consequently; transcription and translation combining in various ways to form new genes.
can be coupled in bacteria. Single genes can produce different functional
proteins by arranging their exons in several
In Eukaryotes, there are at least three RNA
different ways through alternate splicing
polymerases in the nucleus (in addition to RNA
73 Molecular Genetics
language of codes
5' 5' what is the nature
of genetic code?
3' 3' The translation of
Capping proteins follows
3' m RNA
Intron the triplet rule;
Cap Exon a sequence of
three mRNA base
m
Gppp Polyadenylation (a codon) designates
5'
RNA splicing one of the 20
3' different kinds of
m
Gppp
5' amino acids used in
Poly A tail protein synthesis.
m
Gppp Genetic code is the
5' sequence relationship
3'
between nucleotide in
Messenger 5' Gppp
m
Molecular Genetics 74
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&RGRQ 7KUHHOHWWHUDQGVLQJOHOHWWHUDEEUHYLDWLRQV
75 Molecular Genetics
DNA point mutation can lead to a different amino acid sequence Phenotype
Molecular Genetics 76
undergoes polymerisation under oxygen variable loop or extra arm. The amino acid
tension causing the change in the shape of is attached to one end (amino acid acceptor
the RBC from biconcave to a sickle shaped end) and the other end consists of three
structure. anticodon nucleotides. The anticodon pairs
with a codon in mRNA ensuring that the
The effect of point mutation can be
correct amino acid is incorporated into the
understood by the following example.
growing polypeptide chain. Four different
ABC DEF GHI JKL regions of double-stranded RNA are formed
during the folding process. Modified bases
If we insert a letter O between DEF are especially common in tRNA. Wobbling
and GHI the arrangement would be between anticodon and codon allows some
ABC DEF OGH IJK L tRNA molecules to read more than one codon.
The process of addition of amino acid
If we insert OQ at the same place the to tRNA is known as aminoacylation or
arrangement would be charging and the resultant product is called
aminoacyl- tRNA (charged tRNA). Without
ABC DEF OQG HIJ KL
aminoacylation tRNA is known as uncharged
The above information shows that insertion tRNA (Fig. 5.12). If two such tRNAs are
or deletion of one or two bases, changes the brought together peptide bond formation is
reading frame from the point of insertions or favoured energetically. Numbers of amino
deletions. Such mutations are referred to as acids are joined by peptide bonds to form a
frame shift insertion or deletion mutations. polypeptide chain. This aminoacylation is
This forms the genetic basis of proof that codon catalyzed by an enzyme aminoacyl – tRNA
is a triplet and is read in a continuous manner synthetase. This is an endothermic reaction
and is associated with ATP hydrolysis. 20
5.11. tRNA – the adapter molecule
$PLQRDFLGDWWDFKHGKHUH
The transfer RNA, (tRNA) molecule of a
cell acts as a vehicle that picks up the amino $ HQG
&
acids scattered through the cytoplasm and &
$ 6WHP
also reads specific codes of mRNA molecules. HQG & *
* &
Hence it is called an adapter molecule. This & *
$ 8
term was postulated by Francis Crick. 8 $
& * 7ORRS 7\&
The two dimensional clover leaf model of 'ORRS '+8 $ 8 8
tRNA was proposed by Robert Holley. The ' * $ & 8 & * $8 *$ & $& & $
& *
secondary structure of tRNA depicted in * & 8* 8* 7 \ &
* ' $ * $ * &* &
8 7K\PLGLQH3VHXGRXULGLQH
Fig. 5.11 looks like a clover leaf. In actual
'LK\GURXULGLQH & *$ * DQG&\WLGLQH
structure, the tRNA is a compact molecule * & * 9DULDEOHORRS
$ 8
which looks like an inverted L. The clover & *
leaf model of tRNA shows the presence of $ \
& $
three arms namely DHU arm, middle arm 8 < $QWLFRGRQORRS
*$ $
and TΨC arm. These arms have loops such
as amino acyl binding loop, anticodon loop $QWLFRGRQ
and ribosomal binding loop at their ends. Fig. 5.11 Holley’s two-dimensional clover
In addition it also shows a small lump called leaf model of transfer RNA
77 Molecular Genetics
Molecular Genetics 78
79 Molecular Genetics
Molecular Genetics 80
is assembled, it emerges out from the base of the in support of the idea that genes can be turned
large subunit (Fig. 5.13 c). on and off is very convincing. Regulation of
Termination is the third phase of translation. gene expression has been extensively studied
Termination of protein synthesis occurs when in prokaryotes, especially in E. coli. Gene
one of the three stop codons appears in the expression can be controlled or regulated
‘A’ site of the ribosome. The terminal codon at transcriptional or post transcriptional or
signals the action of GTP – dependent release translational level. Here, we are going to discuss
factor, which cleaves the polypeptide chain regulation of gene expression at transcriptional
from the terminal tRNA releasing it from level. Usually, small extracellular or intracellular
the translational complex (step 1). The tRNA metabolites trigger initiation or inhibition
is then released from the ribosome, which of gene expression. The clusters of gene with
then dissociates into its subunits (step 2) related functions are called operons. They
(Fig. 5.13 d). usually transcribe single mRNA molecules.
In [Link], nearly 260 genes are grouped into
75 different operons.
81 Molecular Genetics
Molecular Genetics 82
• Identify all the genes (approximately 30000) method called Shotgun sequencing using
in human DNA. super computers, which has replaced the
• Determine the sequence of the three billion traditional sequencing methods.
chemical base pairs that makeup the human
DNA. 5.14.2 Salient features of Human
• To store this information in databases. Genome Project:
• Improve tools for data analysis. • The human genome contains 3 billion
• Transfer related technologies to other nucleotide bases.
sectors, such as industries. • An average gene consists of 3000 bases,
• Address the ethical, legal and social issues the largest known human gene being
(ELSI) that may arise from the project. dystrophin with 2.4 million bases.
83 Molecular Genetics
response to drugs. 8
7
Chromosome 2 6
This relatively new field combines 5
4
and genomics (the study of genes and DNA from crime scene (c) Amplified repeats, separated by size on
a gel, give a DNA fingerprint
their functions) to develop effective, Fig. 5.15 Schematic representation of
safe medications and doses that will be DNA fingerprinting : Few representative
tailored to a person’s genetic makeup. chromosomes have been shown to contain
different copy number of VNTR
Molecular Genetics 84
DNA finger printing involves identifying DNA of a criminal suspect to determine guilt
differences in some specific regions in DNA or innocence. VNTR patterns are also useful in
sequence called repetitive DNA, because establishing the identity of a homicide victim,
in these sequences, a small stretch of DNA either from DNA found as evidence or from the
is repeated many times. These repetitive body itself.
DNA are separated from bulk genomic DNA
The Steps in DNA Fingerprinting technique is
as different peaks during density gradient
depicted in Fig. 5.16.
centrifugation. The bulk DNA forms a major
1. Extraction of DNA
peak and the other small peaks are referred
to as satellite DNA. Depending on base The process of DNA fingerprinting starts
composition (A : T rich or G : C rich), length with obtaining a sample of DNA from
of segment and number of repetitive units, blood, semen, vaginal fluids, hair roots,
the satellite DNA is classified into many sub teeth, bones, etc.,
categories such as micro-satellites, mini- 2. Polymerase chain reaction (PCR)
satellites, etc., These sequences do not code for In many situations, there is only a small
any proteins, but they form a large portion of amount of DNA available for DNA
human genome. These sequences show high fingerprinting. If needed many copies
degree of polymorphism and form the basis of of the DNA can be produced by PCR
DNA fingerprinting (Fig. 5.15). DNA isolated (DNA amplification).
from blood, hair, skin cells, or other genetic 3. Fragmenting DNA
evidences left at the scene of a crime can be DNA is treated with restriction enzymes
compared through VNTR patterns, with the which cut the DNA into smaller fragments
at specific sites.
2 3
Molecular Genetics 86
2. DNA and RNA are similar with respect to 7. Which of the following is the correct
a) Thymine as a nitrogen base sequence of event with reference to the
b) A single-stranded helix shape central dogma?
c) Nucleotide containing sugars, nitrogen (a) Transcription, Translation, Replication
bases and phosphates (b) Transcription, Replication, Translation
d) The same sequence of nucleotides for the (c) Duplication, Translation, Transcription
amino acid phenyl alanine (d) Replication, Transcription, Translation
87 Molecular Genetics
Molecular Genetics 88
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5'
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89 Molecular Genetics
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[Link]
ICT CORNER
Molecular Genetics
Procedure :
Step 1: Use the URL or scan the QR Code to launch the “Gene Expression Essentials” activity
page.
Step 2:
Click “Expression” pick the genetic material from the Biomolecule Toolbox,
understand the changes for the three different genes.
Step 3: Click “mRNA” and slide through the slider in Positive Transcription factors and
Negative Transcription factors such as Concentration, Affinity. Also Slide through
“Affinity” in RNA Polymerase.
Step 4: Click “Multiple Cells” and find the average protein level vs Time in the graph indicated
above.
Step 4
91 Molecular Genetics