5/15/25, 12:13 PM Program Summary - code.

sas

Program Summary - [Link]

Execution Environment

Author: u64151009
File: /home/u64151009/sasuser.v94/ZWhite/PROJ/[Link]
SAS Platform: Linux LIN X64 5.14.0-284.30.1.el9_2.x86_64
SAS Host: [Link]
SAS Version: 9.04.01M7P08062020
SAS Locale: en_US
Submission Time: 5/15/2025, 12:13:25 PM
Browser Host: [Link]
User Agent: Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/[Link] Safari/537.36
Application Server: [Link]

Code: [Link]

/* STEP 1: IMPORT DATA */

proc import
datafile="/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv"
out=mopeia_raw
dbms=csv
replace;
getnames=yes;
guessingrows=max;
run;

/* STEP 2: CLEANING & VARIABLE CREATION */

data mopeia;
set mopeia_raw;

/* EXCLUSIONS: Remove missing RDT or spray status */

if missing('[Link]'n) or missing('PCD Reference File.2017 Spray St'n) then delete;

/* OUTCOME: Malaria (RDT positive) */

MalariaPos = '[Link]'n;

/* EXPOSURE: IRS in 2017 */

if 'PCD Reference File.2017 Spray St'n = 'Spray' then IRSsprayed = 1;
else if 'PCD Reference File.2017 Spray St'n = 'No_Spray' then IRSsprayed = 0;
else IRSsprayed = .;

/* BEDNET OWNERSHIP */
if 'MAIN_MALARIA_CONTROL_HAS_NETS'n = 1 then BedNet = 1;
else if 'MAIN_MALARIA_CONTROL_HAS_NETS'n = 2 then BedNet = 0;
else BedNet = .;

/* AGE GROUP (already categorized) */

AgeGroup = AGE_GROUP;

/* GENDER */
Gender = DEMOGRAFIC_GENDER;

/* LITERACY */
ReadAble = '[Link]'n;
WriteAble = '[Link]'n;
if ReadAble = 1 and WriteAble = 1 then Literate = 1;
else if ReadAble = 2 or WriteAble = 2 then Literate = 0;
else Literate = 0;

/* HOUSING VARIABLES */
MetalRoof = '[Link]'n;
DurableWall = ('[Link] bricks'n = 1 or '[Link] block'n = 1);

/* LABELS FOR CLARITY */

label MalariaPos = "Malaria RDT Positive"
IRSsprayed = "IRS Sprayed (2017)"
BedNet = "Household Owns Bed Net"
AgeGroup = "Age Group"
Gender = "Gender"
Literate = "Can Read and Write"
MetalRoof = "Zinc Roof"
DurableWall = "Durable Walls";

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keep MalariaPos IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall;
run;

/* STEP 3: EXPORT CLEAN DATASET FOR ANALYSIS */

libname save '/home/u64151009/sasuser.v94/ZWhite/Files';

data save.clean_mopeia;
set mopeia;

/* STEP 4: DESCRIPTIVE ANALYSIS */

/* 4a. Distributions */
proc freq data=mopeia;
tables MalariaPos IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall / missing;
title "Overall Distribution of Analysis Variables";
run;

/* 4b. Table 1: Stratified by IRSsprayed */

proc freq data=mopeia;
tables IRSsprayed*(MalariaPos BedNet AgeGroup Gender Literate MetalRoof DurableWall)
/ chisq norow nocol nopercent;
title "Table 1: Baseline Characteristics by IRSsprayed";
run;

/* STEP 5: BIVARIATE ASSOCIATIONS */

proc freq data=mopeia;
tables BedNet*MalariaPos / chisq relrisk;
title "Malaria and BedNet Ownership";
run;

proc freq data=mopeia;

tables IRSsprayed*MalariaPos / chisq relrisk;
title "Malaria and IRS Spraying";
run;

proc freq data=mopeia;

tables AgeGroup*MalariaPos Gender*MalariaPos Literate*MalariaPos
MetalRoof*MalariaPos DurableWall*MalariaPos / chisq;
title "Other Variables and Malaria Status";
run;

/* STEP 6: LOGISTIC REGRESSION */

/* 6a. Unadjusted: IRSsprayed only */

proc logistic data=mopeia descending plots(only)=roc;
class IRSsprayed (ref='0') / param=ref;
model MalariaPos = IRSsprayed / clodds=wald lackfit outroc=roc1;
title "Unadjusted Model: IRSsprayed → Malaria";
run;

/* 6b. Adjusted model */

proc logistic data=mopeia descending plots(only)=roc;
class IRSsprayed (ref='0')
BedNet (ref='0')
AgeGroup (ref='1')
Gender (ref='1')
Literate (ref='0')
MetalRoof (ref='0')
DurableWall (ref='0')
/ param=ref;
model MalariaPos = IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall
/ clodds=wald lackfit outroc=roc2;
title "Adjusted Logistic Model: IRSsprayed & Covariates";
run;

/* STEP 7: INTERACTIONS & MODEL DIAGNOSTICS */

/* IRSsprayed × BedNet */
proc logistic data=mopeia descending;
class IRSsprayed (ref='0')
BedNet (ref='0')
AgeGroup (ref='1')
Gender (ref='1')
Literate (ref='0')
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MetalRoof (ref='0')
DurableWall (ref='0')
/ param=ref;
model MalariaPos = IRSsprayed|BedNet AgeGroup Gender Literate MetalRoof DurableWall
/ clodds=wald lackfit;
title "Interaction: IRSsprayed × BedNet";
run;

/* Goodness-of-fit and ROC */

ods graphics on;
ods select FitStatistics Association LackFitChiSq;
proc logistic data=mopeia descending plots(only)=roc(id=prob);
class IRSsprayed (ref='0')
BedNet (ref='0')
AgeGroup (ref='1')
Gender (ref='1')
Literate (ref='0')
MetalRoof (ref='0')
DurableWall (ref='0')
/ param=ref;

Log: [Link]

Notes (46)

1 OPTIONS NONOTES NOSTIMER NOSOURCE NOSYNTAXCHECK;

NOTE: ODS statements in the SAS Studio environment may disable some output features.
69
70 /* STEP 1: IMPORT DATA */
71 proc import
72 datafile="/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv"
73 out=mopeia_raw
74 dbms=csv
75 replace;
76 getnames=yes;
77 guessingrows=max;
78 run;

NOTE: Unable to open parameter catalog: [Link] in update mode. Temporary parameter values will be saved to
[Link].
Name MAIN_CLINIC_DATA_SAMPLES_TEST_RESULT truncated to MAIN_CLINIC_DATA_SAMPLES_TEST_RE.
Name MAIN_MALARIA_CONTROL_MEASURES_LAST WEEK truncated to MAIN_MALARIA_CONTROL_MEASURES_LA.
Name PCD Reference File.2016 Spray Status truncated to PCD Reference File.2016 Spray St.
Name PCD Reference File.2017 Spray Status truncated to PCD Reference File.2017 Spray St.
Name PCD Reference [Link] Health Facility truncated to PCD Reference [Link] Healt.
Name PCD Reference [Link] To Closest Health Facility truncated to PCD Reference [Link] To Closest.
Problems were detected with provided names. See LOG.
79 /**********************************************************************
80 * PRODUCT: SAS
81 * VERSION: 9.4
82 * CREATOR: External File Interface
83 * DATE: 15MAY25
84 * DESC: Generated SAS Datastep Code
85 * TEMPLATE SOURCE: (None Specified.)
86 ***********************************************************************/
87 data WORK.MOPEIA_RAW ;
88 %let _EFIERR_ = 0; /* set the ERROR detection macro variable */
89 infile '/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv' delimiter = ','
89 ! MISSOVER DSD lrecl=32767 firstobs=2 ;
90 informat DEMOGRAFIC_GENDER best32. ;
91 informat "[Link]"N best32. ;
92 informat MAIN_HAD_MALARIA best32. ;
93 informat "[Link]"N best32. ;
94 informat MAIN_WRITE best32. ;
95 informat "[Link]"N best32. ;
96 informat "[Link]"N best32. ;
97 informat "[Link] plastic"N best32. ;
98 informat "[Link] covered with sand"N best32. ;
99 informat "[Link] bark"N best32. ;
100 informat "[Link] and zinc"N best32. ;
101 informat "[Link] bricks"N best32. ;
102 informat "[Link]"N best32. ;
103 informat "[Link] block"N best32. ;
104 informat "[Link]"N best32. ;
105 informat MAIN_ADMIN_TIME best32. ;
106 informat MAIN_ROOF best32. ;
107 informat "[Link]"N best32. ;
108 informat "[Link]"N best32. ;
109 informat "[Link]"N best32. ;
110 informat "[Link]"N best32. ;
111 informat "[Link]"N best32. ;
112 informat "[Link]"N best32. ;
113 informat "[Link]"N best32. ;
114 informat MAIN_OCUPATION best32. ;

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115 informat "[Link]"N best32. ;
116 informat "[Link]"N best32. ;
117 informat "[Link]"N best32. ;
118 informat "[Link]"N best32. ;
119 informat "[Link]"N best32. ;
120 informat "[Link]"N best32. ;
121 informat "[Link]"N best32. ;
122 informat "[Link]"N best32. ;
123 informat PERM_ID $16. ;
124 informat CLUSTER_ID best32. ;
125 informat "[Link]"N best32. ;
126 informat MAIN_HF_TRAV_TIME best32. ;
127 informat MAIN_EDUCATION best32. ;
128 informat "[Link]"N best32. ;
129 informat "Ed.EP1"N best32. ;
130 informat "Ed.EP2"N best32. ;
131 informat "Ed.ESG1"N best32. ;
132 informat "Ed.ESG2"N best32. ;
133 informat "[Link]"N best32. ;
134 informat "[Link] basico"N best32. ;
135 informat "[Link] Medio"N best32. ;
136 informat "[Link]"N best32. ;
137 informat "[Link]"N best32. ;
138 informat "[Link]"N best32. ;
139 informat FAMILY_ID $12. ;
140 informat DEMOGRAFIC_DATE_VISIT anydtdtm40. ;
141 informat AGE_GROUP best32. ;
142 informat "Age.u5"N best32. ;
143 informat "Age.o5"N best32. ;
144 informat VILLAGE_ID best32. ;
145 informat "[Link]"N best32. ;
146 informat MAIN_MALARIA_CONTROL_HAS_NETS best32. ;
147 informat MAIN_MALARIA_CONTROL_NET_COUNT best32. ;
148 informat "[Link].48"N best32. ;
149 informat "[Link]"N best32. ;
150 informat "[Link]"N best32. ;
151 informat MAIN_CLINIC_DATA_SAMPLES_TEST_RE best32. ;
152 informat MAIN_MALARIA_CONTROL_NETS best32. ;
153 informat MAIN_MALARIA_CONTROL_MEASURES_LA best32. ;
154 informat "[Link]"N best32. ;
155 informat "[Link]"N best32. ;
156 informat "[Link]"N best32. ;
157 informat "[Link]"N best32. ;
158 informat "PCD Reference File.2016 Spray St"N $8. ;
159 informat "PCD Reference File.2017 Spray St"N $8. ;
160 informat "PCD Reference [Link]"N $25. ;
161 informat "[Link]"N best32. ;
162 informat "PCD Reference [Link]"N $6. ;
163 informat "[Link]"N best32. ;
164 informat "[Link]"N best32. ;
165 informat "[Link]"N best32. ;
166 informat "[Link]"N best32. ;
167 informat "PCD Reference [Link]"N best32. ;
168 informat "PCD Reference [Link]"N best32. ;
169 informat "PCD Reference [Link] Healt"N $30. ;
170 informat "PCD Reference [Link] To Closest"N best32. ;
171 format DEMOGRAFIC_GENDER best12. ;
172 format "[Link]"N best12. ;
173 format MAIN_HAD_MALARIA best12. ;
174 format "[Link]"N best12. ;
175 format MAIN_WRITE best12. ;
176 format "[Link]"N best12. ;
177 format "[Link]"N best12. ;
178 format "[Link] plastic"N best12. ;
179 format "[Link] covered with sand"N best12. ;
180 format "[Link] bark"N best12. ;
181 format "[Link] and zinc"N best12. ;
182 format "[Link] bricks"N best12. ;
183 format "[Link]"N best12. ;
184 format "[Link] block"N best12. ;
185 format "[Link]"N best12. ;
186 format MAIN_ADMIN_TIME best12. ;
187 format MAIN_ROOF best12. ;
188 format "[Link]"N best12. ;
189 format "[Link]"N best12. ;
190 format "[Link]"N best12. ;
191 format "[Link]"N best12. ;
192 format "[Link]"N best12. ;
193 format "[Link]"N best12. ;
194 format "[Link]"N best12. ;
195 format MAIN_OCUPATION best12. ;
196 format "[Link]"N best12. ;
197 format "[Link]"N best12. ;
198 format "[Link]"N best12. ;
199 format "[Link]"N best12. ;
200 format "[Link]"N best12. ;
201 format "[Link]"N best12. ;
202 format "[Link]"N best12. ;

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203 format "[Link]"N best12. ;
204 format PERM_ID $16. ;
205 format CLUSTER_ID best12. ;
206 format "[Link]"N best12. ;
207 format MAIN_HF_TRAV_TIME best12. ;
208 format MAIN_EDUCATION best12. ;
209 format "[Link]"N best12. ;
210 format "Ed.EP1"N best12. ;
211 format "Ed.EP2"N best12. ;
212 format "Ed.ESG1"N best12. ;
213 format "Ed.ESG2"N best12. ;
214 format "[Link]"N best12. ;
215 format "[Link] basico"N best12. ;
216 format "[Link] Medio"N best12. ;
217 format "[Link]"N best12. ;
218 format "[Link]"N best12. ;
219 format "[Link]"N best12. ;
220 format FAMILY_ID $12. ;
221 format DEMOGRAFIC_DATE_VISIT datetime. ;
222 format AGE_GROUP best12. ;
223 format "Age.u5"N best12. ;
224 format "Age.o5"N best12. ;
225 format VILLAGE_ID best12. ;
226 format "[Link]"N best12. ;
227 format MAIN_MALARIA_CONTROL_HAS_NETS best12. ;
228 format MAIN_MALARIA_CONTROL_NET_COUNT best12. ;
229 format "[Link].48"N best12. ;
230 format "[Link]"N best12. ;
231 format "[Link]"N best12. ;
232 format MAIN_CLINIC_DATA_SAMPLES_TEST_RE best12. ;
233 format MAIN_MALARIA_CONTROL_NETS best12. ;
234 format MAIN_MALARIA_CONTROL_MEASURES_LA best12. ;
235 format "[Link]"N best12. ;
236 format "[Link]"N best12. ;
237 format "[Link]"N best12. ;
238 format "[Link]"N best12. ;
239 format "PCD Reference File.2016 Spray St"N $8. ;
240 format "PCD Reference File.2017 Spray St"N $8. ;
241 format "PCD Reference [Link]"N $25. ;
242 format "[Link]"N best12. ;
243 format "PCD Reference [Link]"N $6. ;
244 format "[Link]"N best12. ;
245 format "[Link]"N best12. ;
246 format "[Link]"N best12. ;
247 format "[Link]"N best12. ;
248 format "PCD Reference [Link]"N best12. ;
249 format "PCD Reference [Link]"N best12. ;
250 format "PCD Reference [Link] Healt"N $30. ;
251 format "PCD Reference [Link] To Closest"N best12. ;
252 input
253 DEMOGRAFIC_GENDER
254 "[Link]"N
255 MAIN_HAD_MALARIA
256 "[Link]"N
257 MAIN_WRITE
258 "[Link]"N
259 "[Link]"N
260 "[Link] plastic"N
261 "[Link] covered with sand"N
262 "[Link] bark"N
263 "[Link] and zinc"N
264 "[Link] bricks"N
265 "[Link]"N
266 "[Link] block"N
267 "[Link]"N
268 MAIN_ADMIN_TIME
269 MAIN_ROOF
270 "[Link]"N
271 "[Link]"N
272 "[Link]"N
273 "[Link]"N
274 "[Link]"N
275 "[Link]"N
276 "[Link]"N
277 MAIN_OCUPATION
278 "[Link]"N
279 "[Link]"N
280 "[Link]"N
281 "[Link]"N
282 "[Link]"N
283 "[Link]"N
284 "[Link]"N
285 "[Link]"N
286 PERM_ID $
287 CLUSTER_ID
288 "[Link]"N
289 MAIN_HF_TRAV_TIME
290 MAIN_EDUCATION

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291 "[Link]"N
292 "Ed.EP1"N
293 "Ed.EP2"N
294 "Ed.ESG1"N
295 "Ed.ESG2"N
296 "[Link]"N
297 "[Link] basico"N
298 "[Link] Medio"N
299 "[Link]"N
300 "[Link]"N
301 "[Link]"N
302 FAMILY_ID $
303 DEMOGRAFIC_DATE_VISIT
304 AGE_GROUP
305 "Age.u5"N
306 "Age.o5"N
307 VILLAGE_ID
308 "[Link]"N
309 MAIN_MALARIA_CONTROL_HAS_NETS
310 MAIN_MALARIA_CONTROL_NET_COUNT
311 "[Link].48"N
312 "[Link]"N
313 "[Link]"N
314 MAIN_CLINIC_DATA_SAMPLES_TEST_RE
315 MAIN_MALARIA_CONTROL_NETS
316 MAIN_MALARIA_CONTROL_MEASURES_LA
317 "[Link]"N
318 "[Link]"N
319 "[Link]"N
320 "[Link]"N
321 "PCD Reference File.2016 Spray St"N $
322 "PCD Reference File.2017 Spray St"N $
323 "PCD Reference [Link]"N $
324 "[Link]"N
325 "PCD Reference [Link]"N $
326 "[Link]"N
327 "[Link]"N
328 "[Link]"N
329 "[Link]"N
330 "PCD Reference [Link]"N
331 "PCD Reference [Link]"N
332 "PCD Reference [Link] Healt"N $
333 "PCD Reference [Link] To Closest"N
334 ;
335 if _ERROR_ then call symputx('_EFIERR_',1); /* set ERROR detection macro variable */
336 run;

NOTE: The infile '/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv' is:

Filename=/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv,
Owner Name=u64151009,Group Name=oda,
Access Permission=-rw-r--r--,
Last Modified=14May2025:11:34:10,
File Size (bytes)=229211

NOTE: 805 records were read from the infile

'/home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv'.
The minimum record length was 267.
The maximum record length was 295.
NOTE: The data set WORK.MOPEIA_RAW has 805 observations and 81 variables.
NOTE: DATA statement used (Total process time):
real time 0.01 seconds
user cpu time 0.01 seconds
system cpu time 0.00 seconds
memory 10796.06k
OS Memory 35368.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 141 Switch Count 2
Page Faults 0
Page Reclaims 172
Page Swaps 0
Voluntary Context Switches 17
Involuntary Context Switches 0
Block Input Operations 0
Block Output Operations 1320

805 rows created in WORK.MOPEIA_RAW from /home/u64151009/sasuser.v94/BioStat/Files/ngenirs-mopeia-cross-sectional-survey_2018.csv.

NOTE: WORK.MOPEIA_RAW data set was successfully created.

NOTE: The data set WORK.MOPEIA_RAW has 805 observations and 81 variables.
NOTE: PROCEDURE IMPORT used (Total process time):
real time 1.37 seconds
user cpu time 1.34 seconds
system cpu time 0.00 seconds
memory 10796.06k
OS Memory 35752.00k

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Timestamp 05/15/2025 06:43:24 AM
Step Count 141 Switch Count 17
Page Faults 0
Page Reclaims 1428
Page Swaps 0
Voluntary Context Switches 136
Involuntary Context Switches 4
Block Input Operations 0
Block Output Operations 1400

337
338
339 /* STEP 2: CLEANING & VARIABLE CREATION */
340 data mopeia;
341 set mopeia_raw;
342
343 /* EXCLUSIONS: Remove missing RDT or spray status */
344 if missing('[Link]'n) or missing('PCD Reference File.2017 Spray St'n) then delete;
345
346 /* OUTCOME: Malaria (RDT positive) */
347 MalariaPos = '[Link]'n;
348
349 /* EXPOSURE: IRS in 2017 */
350 if 'PCD Reference File.2017 Spray St'n = 'Spray' then IRSsprayed = 1;
351 else if 'PCD Reference File.2017 Spray St'n = 'No_Spray' then IRSsprayed = 0;
352 else IRSsprayed = .;
353
354 /* BEDNET OWNERSHIP */
355 if 'MAIN_MALARIA_CONTROL_HAS_NETS'n = 1 then BedNet = 1;
356 else if 'MAIN_MALARIA_CONTROL_HAS_NETS'n = 2 then BedNet = 0;
357 else BedNet = .;
358
359 /* AGE GROUP (already categorized) */
360 AgeGroup = AGE_GROUP;
361
362 /* GENDER */
363 Gender = DEMOGRAFIC_GENDER;
364
365 /* LITERACY */
366 ReadAble = '[Link]'n;
367 WriteAble = '[Link]'n;
368 if ReadAble = 1 and WriteAble = 1 then Literate = 1;
369 else if ReadAble = 2 or WriteAble = 2 then Literate = 0;
370 else Literate = 0;
371
372 /* HOUSING VARIABLES */
373 MetalRoof = '[Link]'n;
374 DurableWall = ('[Link] bricks'n = 1 or '[Link] block'n = 1);
375
376 /* LABELS FOR CLARITY */
377 label MalariaPos = "Malaria RDT Positive"
378 IRSsprayed = "IRS Sprayed (2017)"
379 BedNet = "Household Owns Bed Net"
380 AgeGroup = "Age Group"
381 Gender = "Gender"
382 Literate = "Can Read and Write"
383 MetalRoof = "Zinc Roof"
384 DurableWall = "Durable Walls";
385
386 keep MalariaPos IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall;
387 run;

NOTE: There were 805 observations read from the data set WORK.MOPEIA_RAW.
NOTE: The data set [Link] has 786 observations and 8 variables.
NOTE: DATA statement used (Total process time):
real time 0.00 seconds
user cpu time 0.00 seconds
system cpu time 0.00 seconds
memory 1875.93k
OS Memory 30512.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 142 Switch Count 2
Page Faults 0
Page Reclaims 203
Page Swaps 0
Voluntary Context Switches 10
Involuntary Context Switches 0
Block Input Operations 0
Block Output Operations 272

388
389
390 /* STEP 3: EXPORT CLEAN DATASET FOR ANALYSIS */
391 libname save '/home/u64151009/sasuser.v94/ZWhite/Files';
NOTE: Libref SAVE was successfully assigned as follows:
Engine: V9

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Physical Name: /home/u64151009/sasuser.v94/ZWhite/Files
392
393 data save.clean_mopeia;
394 set mopeia;
395
396
397 /* STEP 4: DESCRIPTIVE ANALYSIS */
398
399 /* 4a. Distributions */

NOTE: There were 786 observations read from the data set [Link].
NOTE: The data set SAVE.CLEAN_MOPEIA has 786 observations and 8 variables.
NOTE: DATA statement used (Total process time):
real time 0.01 seconds
user cpu time 0.01 seconds
system cpu time 0.00 seconds
memory 1059.06k
OS Memory 30128.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 143 Switch Count 1
Page Faults 0
Page Reclaims 107
Page Swaps 0
Voluntary Context Switches 34
Involuntary Context Switches 0
Block Input Operations 0
Block Output Operations 264

400 proc freq data=mopeia;

401 tables MalariaPos IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall / missing;
402 title "Overall Distribution of Analysis Variables";
403 run;

NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE FREQ used (Total process time):
real time 0.04 seconds
user cpu time 0.04 seconds
system cpu time 0.01 seconds
memory 1962.03k
OS Memory 30128.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 144 Switch Count 3
Page Faults 0
Page Reclaims 119
Page Swaps 0
Voluntary Context Switches 22
Involuntary Context Switches 2
Block Input Operations 0
Block Output Operations 288

404
405 /* 4b. Table 1: Stratified by IRSsprayed */
406 proc freq data=mopeia;
407 tables IRSsprayed*(MalariaPos BedNet AgeGroup Gender Literate MetalRoof DurableWall)
408 / chisq norow nocol nopercent;
409 title "Table 1: Baseline Characteristics by IRSsprayed";
410 run;

NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE FREQ used (Total process time):
real time 0.13 seconds
user cpu time 0.13 seconds
system cpu time 0.00 seconds
memory 1694.56k
OS Memory 30388.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 145 Switch Count 5
Page Faults 0
Page Reclaims 185
Page Swaps 0
Voluntary Context Switches 39
Involuntary Context Switches 2
Block Input Operations 0
Block Output Operations 592

411
412
413 /* STEP 5: BIVARIATE ASSOCIATIONS */
414 proc freq data=mopeia;
415 tables BedNet*MalariaPos / chisq relrisk;
416 title "Malaria and BedNet Ownership";
417 run;

NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE FREQ used (Total process time):

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real time 0.03 seconds
user cpu time 0.03 seconds
system cpu time 0.00 seconds
memory 1187.31k
OS Memory 30388.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 146 Switch Count 5
Page Faults 0
Page Reclaims 185
Page Swaps 0
Voluntary Context Switches 38
Involuntary Context Switches 2
Block Input Operations 0
Block Output Operations 544

418
419 proc freq data=mopeia;
420 tables IRSsprayed*MalariaPos / chisq relrisk;
421 title "Malaria and IRS Spraying";
422 run;

NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE FREQ used (Total process time):
real time 0.03 seconds
user cpu time 0.03 seconds
system cpu time 0.01 seconds
memory 1184.65k
OS Memory 30388.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 147 Switch Count 5
Page Faults 0
Page Reclaims 185
Page Swaps 0
Voluntary Context Switches 40
Involuntary Context Switches 3
Block Input Operations 0
Block Output Operations 544

423
424 proc freq data=mopeia;
425 tables AgeGroup*MalariaPos Gender*MalariaPos Literate*MalariaPos
426 MetalRoof*MalariaPos DurableWall*MalariaPos / chisq;
427 title "Other Variables and Malaria Status";
428 run;

NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE FREQ used (Total process time):
real time 0.11 seconds
user cpu time 0.11 seconds
system cpu time 0.00 seconds
memory 1340.93k
OS Memory 30388.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 148 Switch Count 5
Page Faults 0
Page Reclaims 185
Page Swaps 0
Voluntary Context Switches 36
Involuntary Context Switches 3
Block Input Operations 0
Block Output Operations 576

429
430
431 /* STEP 6: LOGISTIC REGRESSION */
432
433 /* 6a. Unadjusted: IRSsprayed only */
434 proc logistic data=mopeia descending plots(only)=roc;
435 class IRSsprayed (ref='0') / param=ref;
436 model MalariaPos = IRSsprayed / clodds=wald lackfit outroc=roc1;
437 title "Unadjusted Model: IRSsprayed → Malaria";
438 run;

NOTE: PROC LOGISTIC is modeling the probability that MalariaPos=1.

NOTE: Convergence criterion (GCONV=1E-8) satisfied.
NOTE: The Hosmer-Lemeshow test is not computed because the constructed number of groups (2) must be greater than the
degree-of-freedom correction (2).
NOTE: There were 786 observations read from the data set [Link].
NOTE: The data set WORK.ROC1 has 2 observations and 7 variables.
NOTE: PROCEDURE LOGISTIC used (Total process time):
real time 0.17 seconds
user cpu time 0.12 seconds
system cpu time 0.00 seconds
memory 11714.71k
OS Memory 38980.00k

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Timestamp 05/15/2025 06:43:24 AM
Step Count 149 Switch Count 3
Page Faults 0
Page Reclaims 2215
Page Swaps 0
Voluntary Context Switches 229
Involuntary Context Switches 3
Block Input Operations 0
Block Output Operations 1032

439
440 /* 6b. Adjusted model */
441 proc logistic data=mopeia descending plots(only)=roc;
442 class IRSsprayed (ref='0')
443 BedNet (ref='0')
444 AgeGroup (ref='1')
445 Gender (ref='1')
446 Literate (ref='0')
447 MetalRoof (ref='0')
448 DurableWall (ref='0')
449 / param=ref;
450 model MalariaPos = IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall
451 / clodds=wald lackfit outroc=roc2;
452 title "Adjusted Logistic Model: IRSsprayed & Covariates";
453 run;

NOTE: PROC LOGISTIC is modeling the probability that MalariaPos=1.

NOTE: Convergence criterion (GCONV=1E-8) satisfied.
NOTE: There were 786 observations read from the data set [Link].
NOTE: The data set WORK.ROC2 has 105 observations and 7 variables.
NOTE: PROCEDURE LOGISTIC used (Total process time):
real time 0.17 seconds
user cpu time 0.12 seconds
system cpu time 0.00 seconds
memory 5609.62k
OS Memory 38724.00k
Timestamp 05/15/2025 06:43:24 AM
Step Count 150 Switch Count 3
Page Faults 0
Page Reclaims 738
Page Swaps 0
Voluntary Context Switches 531
Involuntary Context Switches 5
Block Input Operations 0
Block Output Operations 736

454
455
456 /* STEP 7: INTERACTIONS & MODEL DIAGNOSTICS */
457
458 /* IRSsprayed × BedNet */
459 proc logistic data=mopeia descending;
460 class IRSsprayed (ref='0')
461 BedNet (ref='0')
462 AgeGroup (ref='1')
463 Gender (ref='1')
464 Literate (ref='0')
465 MetalRoof (ref='0')
466 DurableWall (ref='0')
467 / param=ref;
468 model MalariaPos = IRSsprayed|BedNet AgeGroup Gender Literate MetalRoof DurableWall
469 / clodds=wald lackfit;
470 title "Interaction: IRSsprayed × BedNet";
471 run;

NOTE: PROC LOGISTIC is modeling the probability that MalariaPos=1.

NOTE: Convergence criterion (GCONV=1E-8) satisfied.
NOTE: Under full-rank parameterizations, Type 3 effect tests are replaced by joint tests. The joint test for an effect is a test
that all the parameters associated with that effect are zero. Such joint tests might not be equivalent to Type 3 effect tests
under GLM parameterization.
NOTE: The CLODDS= option does not compute odds ratios for effects involved in interactions or nestings.
Specify the ODDSRATIO statement to compute odds ratios for these effects.
NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE LOGISTIC used (Total process time):
real time 0.18 seconds
user cpu time 0.12 seconds
system cpu time 0.01 seconds
memory 5966.21k
OS Memory 39488.00k
Timestamp 05/15/2025 06:43:25 AM
Step Count 151 Switch Count 1
Page Faults 0
Page Reclaims 732
Page Swaps 0
Voluntary Context Switches 223
Involuntary Context Switches 6

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Block Input Operations 0
Block Output Operations 472

472
473 /* Goodness-of-fit and ROC */
474 ods graphics on;
475 ods select FitStatistics Association LackFitChiSq;
476 proc logistic data=mopeia descending plots(only)=roc(id=prob);
477 class IRSsprayed (ref='0')
478 BedNet (ref='0')
479 AgeGroup (ref='1')
480 Gender (ref='1')
481 Literate (ref='0')
482 MetalRoof (ref='0')
483 DurableWall (ref='0')
484 / param=ref;
485 model MalariaPos = IRSsprayed BedNet AgeGroup Gender Literate MetalRoof DurableWall
486 / clodds=wald lackfit rsquare;
487 title "Model Diagnostics: Fit, ROC, HL Test";
488 run;

NOTE: PROC LOGISTIC is modeling the probability that MalariaPos=1.

NOTE: Convergence criterion (GCONV=1E-8) satisfied.
NOTE: There were 786 observations read from the data set [Link].
NOTE: PROCEDURE LOGISTIC used (Total process time):
real time 0.03 seconds
user cpu time 0.03 seconds
system cpu time 0.00 seconds
memory 2790.46k
OS Memory 37824.00k
Timestamp 05/15/2025 06:43:25 AM
Step Count 152 Switch Count 1
Page Faults 0
Page Reclaims 233
Page Swaps 0
Voluntary Context Switches 11
Involuntary Context Switches 2
Block Input Operations 0
Block Output Operations 296

489
490
491 OPTIONS NONOTES NOSTIMER NOSOURCE NOSYNTAXCHECK;
501

Results: [Link]

Overall Distribution of Analysis Variables

The FREQ Procedure

Malaria RDT Positive

Cumulative Cumulative
MalariaPos Frequency Percent Frequency Percent
0 487 61.96 487 61.96
1 299 38.04 786 100.00

IRS Sprayed (2017)

Cumulative Cumulative
IRSsprayed Frequency Percent Frequency Percent
0 387 49.24 387 49.24
1 399 50.76 786 100.00

Household Owns Bed Net

Cumulative Cumulative
BedNet Frequency Percent Frequency Percent
0 42 5.34 42 5.34
1 744 94.66 786 100.00

Age Group
Cumulative Cumulative
AgeGroup Frequency Percent Frequency Percent
1 384 48.85 384 48.85
2 59 7.51 443 56.36
3 343 43.64 786 100.00

Gender
Cumulative Cumulative
Gender Frequency Percent Frequency Percent
1 404 51.40 404 51.40

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Gender
Cumulative Cumulative
Gender Frequency Percent Frequency Percent
2 382 48.60 786 100.00

Can Read and Write

Cumulative Cumulative
Literate Frequency Percent Frequency Percent
0 468 59.54 468 59.54
1 318 40.46 786 100.00

Zinc Roof
Cumulative Cumulative
MetalRoof Frequency Percent Frequency Percent
0 634 80.66 634 80.66
1 152 19.34 786 100.00

Durable Walls
Cumulative Cumulative
DurableWall Frequency Percent Frequency Percent
0 417 53.05 417 53.05
1 369 46.95 786 100.00

Table 1: Baseline Characteristics by IRSsprayed

The FREQ Procedure

Frequency Table of IRSsprayed by MalariaPos

MalariaPos(Malaria RDT Positive)
IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 225 162 387
1 262 137 399
Total 487 299 786

Statistics for Table of IRSsprayed by MalariaPos

Statistic DF Value Prob

Chi-Square 1 4.7193 0.0298
Likelihood Ratio Chi-Square 1 4.7233 0.0298
Continuity Adj. Chi-Square 1 4.4054 0.0358
Mantel-Haenszel Chi-Square 1 4.7133 0.0299
Phi Coefficient -0.0775
Contingency Coefficient 0.0773
Cramer's V -0.0775

Fisher's Exact Test

Cell (1,1) Frequency (F) 225
Left-sided Pr <= F 0.0179
Right-sided Pr >= F 0.9877

Table Probability (P) 0.0056

Two-sided Pr <= P 0.0331

Sample Size = 786

Frequency Table of IRSsprayed by BedNet

BedNet(Household Owns Bed Net)
IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 23 364 387
1 19 380 399
Total 42 744 786

Statistics for Table of IRSsprayed by BedNet

Statistic DF Value Prob

Chi-Square 1 0.5420 0.4616
Likelihood Ratio Chi-Square 1 0.5424 0.4614
Continuity Adj. Chi-Square 1 0.3336 0.5636
Mantel-Haenszel Chi-Square 1 0.5413 0.4619
Phi Coefficient 0.0263
Contingency Coefficient 0.0262
Cramer's V 0.0263

Fisher's Exact Test

Cell (1,1) Frequency (F) 23
Left-sided Pr <= F 0.8145
Right-sided Pr >= F 0.2819

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Fisher's Exact Test
Table Probability (P) 0.0964
Two-sided Pr <= P 0.5269

Sample Size = 786

Frequency Table of IRSsprayed by AgeGroup

AgeGroup(Age Group)
IRSsprayed(IRS Sprayed (2017)) 1 2 3 Total
0 181 27 179 387
1 203 32 164 399
Total 384 59 343 786

Statistics for Table of IRSsprayed by AgeGroup

Statistic DF Value Prob

Chi-Square 2 2.1574 0.3400
Likelihood Ratio Chi-Square 2 2.1583 0.3399
Mantel-Haenszel Chi-Square 1 1.8234 0.1769
Phi Coefficient 0.0524
Contingency Coefficient 0.0523
Cramer's V 0.0524

Sample Size = 786

Frequency Table of IRSsprayed by Gender

Gender(Gender)
IRSsprayed(IRS Sprayed (2017)) 1 2 Total
0 190 197 387
1 214 185 399
Total 404 382 786

Statistics for Table of IRSsprayed by Gender

Statistic DF Value Prob

Chi-Square 1 1.6199 0.2031
Likelihood Ratio Chi-Square 1 1.6204 0.2030
Continuity Adj. Chi-Square 1 1.4433 0.2296
Mantel-Haenszel Chi-Square 1 1.6178 0.2034
Phi Coefficient -0.0454
Contingency Coefficient 0.0454
Cramer's V -0.0454

Fisher's Exact Test

Cell (1,1) Frequency (F) 190
Left-sided Pr <= F 0.1148
Right-sided Pr >= F 0.9106

Table Probability (P) 0.0254

Two-sided Pr <= P 0.2250

Sample Size = 786

Frequency Table of IRSsprayed by Literate

Literate(Can Read and Write)
IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 236 151 387
1 232 167 399
Total 468 318 786

Statistics for Table of IRSsprayed by Literate

Statistic DF Value Prob

Chi-Square 1 0.6562 0.4179
Likelihood Ratio Chi-Square 1 0.6563 0.4179
Continuity Adj. Chi-Square 1 0.5437 0.4609
Mantel-Haenszel Chi-Square 1 0.6553 0.4182
Phi Coefficient 0.0289
Contingency Coefficient 0.0289
Cramer's V 0.0289

Fisher's Exact Test

Cell (1,1) Frequency (F) 236
Left-sided Pr <= F 0.8113
Right-sided Pr >= F 0.2305

Table Probability (P) 0.0418

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Fisher's Exact Test
Two-sided Pr <= P 0.4249

Sample Size = 786

Frequency Table of IRSsprayed by MetalRoof

MetalRoof(Zinc Roof)
IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 309 78 387
1 325 74 399
Total 634 152 786

Statistics for Table of IRSsprayed by MetalRoof

Statistic DF Value Prob

Chi-Square 1 0.3259 0.5681
Likelihood Ratio Chi-Square 1 0.3259 0.5681
Continuity Adj. Chi-Square 1 0.2309 0.6308
Mantel-Haenszel Chi-Square 1 0.3255 0.5683
Phi Coefficient -0.0204
Contingency Coefficient 0.0204
Cramer's V -0.0204

Fisher's Exact Test

Cell (1,1) Frequency (F) 309
Left-sided Pr <= F 0.3154
Right-sided Pr >= F 0.7458

Table Probability (P) 0.0612

Two-sided Pr <= P 0.5886

Sample Size = 786

Frequency Table of IRSsprayed by DurableWall

DurableWall(Durable Walls)
IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 188 199 387
1 229 170 399
Total 417 369 786

Statistics for Table of IRSsprayed by DurableWall

Statistic DF Value Prob

Chi-Square 1 6.1285 0.0133
Likelihood Ratio Chi-Square 1 6.1360 0.0132
Continuity Adj. Chi-Square 1 5.7797 0.0162
Mantel-Haenszel Chi-Square 1 6.1207 0.0134
Phi Coefficient -0.0883
Contingency Coefficient 0.0880
Cramer's V -0.0883

Fisher's Exact Test

Cell (1,1) Frequency (F) 188
Left-sided Pr <= F 0.0081
Right-sided Pr >= F 0.9946

Table Probability (P) 0.0027

Two-sided Pr <= P 0.0151

Sample Size = 786

Malaria and BedNet Ownership

The FREQ Procedure

Frequency Table of BedNet by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct BedNet(Household Owns Bed Net) 0 1 Total
0 24 18 42
3.05 2.29 5.34
57.14 42.86
4.93 6.02
1 463 281 744
58.91 35.75 94.66
62.23 37.77
95.07 93.98
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of BedNet by MalariaPos

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Statistic DF Value Prob
Chi-Square 1 0.4367 0.5087
Likelihood Ratio Chi-Square 1 0.4308 0.5116
Continuity Adj. Chi-Square 1 0.2475 0.6188
Mantel-Haenszel Chi-Square 1 0.4362 0.5090
Phi Coefficient -0.0236
Contingency Coefficient 0.0236
Cramer's V -0.0236

Fisher's Exact Test

Cell (1,1) Frequency (F) 24
Left-sided Pr <= F 0.3065
Right-sided Pr >= F 0.7960

Table Probability (P) 0.1026

Two-sided Pr <= P 0.5171

Odds Ratio and Relative Risks

Statistic Value 95% Confidence Limits
Odds Ratio 0.8092 0.4315 1.5176
Relative Risk (Column 1) 0.9182 0.7025 1.2002
Relative Risk (Column 2) 1.1347 0.7907 1.6284

Sample Size = 786

Malaria and IRS Spraying

The FREQ Procedure

Frequency Table of IRSsprayed by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct IRSsprayed(IRS Sprayed (2017)) 0 1 Total
0 225 162 387
28.63 20.61 49.24
58.14 41.86
46.20 54.18
1 262 137 399
33.33 17.43 50.76
65.66 34.34
53.80 45.82
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of IRSsprayed by MalariaPos

Statistic DF Value Prob

Chi-Square 1 4.7193 0.0298
Likelihood Ratio Chi-Square 1 4.7233 0.0298
Continuity Adj. Chi-Square 1 4.4054 0.0358
Mantel-Haenszel Chi-Square 1 4.7133 0.0299
Phi Coefficient -0.0775
Contingency Coefficient 0.0773
Cramer's V -0.0775

Fisher's Exact Test

Cell (1,1) Frequency (F) 225
Left-sided Pr <= F 0.0179
Right-sided Pr >= F 0.9877

Table Probability (P) 0.0056

Two-sided Pr <= P 0.0331

Odds Ratio and Relative Risks

Statistic Value 95% Confidence Limits
Odds Ratio 0.7263 0.5440 0.9696
Relative Risk (Column 1) 0.8854 0.7929 0.9887
Relative Risk (Column 2) 1.2191 1.0189 1.4588

Sample Size = 786

Other Variables and Malaria Status

The FREQ Procedure

Frequency Table of AgeGroup by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct AgeGroup(Age Group) 0 1 Total
1 176 208 384
22.39 26.46 48.85
45.83 54.17
36.14 69.57
2 38 21 59
4.83 2.67 7.51
64.41 35.59

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Table of AgeGroup by MalariaPos
MalariaPos(Malaria RDT Positive)
AgeGroup(Age Group) 0 1 Total
7.80 7.02
3 273 70 343
34.73 8.91 43.64
79.59 20.41
56.06 23.41
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of AgeGroup by MalariaPos

Statistic DF Value Prob

Chi-Square 2 87.7617 <.0001
Likelihood Ratio Chi-Square 2 90.6092 <.0001
Mantel-Haenszel Chi-Square 1 87.5837 <.0001
Phi Coefficient 0.3341
Contingency Coefficient 0.3169
Cramer's V 0.3341

Sample Size = 786

Frequency Table of Gender by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct Gender(Gender) 0 1 Total
1 244 160 404
31.04 20.36 51.40
60.40 39.60
50.10 53.51
2 243 139 382
30.92 17.68 48.60
63.61 36.39
49.90 46.49
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of Gender by MalariaPos

Statistic DF Value Prob

Chi-Square 1 0.8619 0.3532
Likelihood Ratio Chi-Square 1 0.8623 0.3531
Continuity Adj. Chi-Square 1 0.7308 0.3926
Mantel-Haenszel Chi-Square 1 0.8608 0.3535
Phi Coefficient -0.0331
Contingency Coefficient 0.0331
Cramer's V -0.0331

Fisher's Exact Test

Cell (1,1) Frequency (F) 244
Left-sided Pr <= F 0.1963
Right-sided Pr >= F 0.8418

Table Probability (P) 0.0381

Two-sided Pr <= P 0.3780

Sample Size = 786

Frequency Table of Literate by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct Literate(Can Read and Write) 0 1 Total
0 288 180 468
36.64 22.90 59.54
61.54 38.46
59.14 60.20
1 199 119 318
25.32 15.14 40.46
62.58 37.42
40.86 39.80
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of Literate by MalariaPos

Statistic DF Value Prob

Chi-Square 1 0.0869 0.7681
Likelihood Ratio Chi-Square 1 0.0870 0.7681
Continuity Adj. Chi-Square 1 0.0484 0.8259
Mantel-Haenszel Chi-Square 1 0.0868 0.7683
Phi Coefficient -0.0105
Contingency Coefficient 0.0105
Cramer's V -0.0105

Fisher's Exact Test

Cell (1,1) Frequency (F) 288
Left-sided Pr <= F 0.4134

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Fisher's Exact Test
Right-sided Pr >= F 0.6438

Table Probability (P) 0.0572

Two-sided Pr <= P 0.8224

Sample Size = 786

Frequency Table of MetalRoof by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct MetalRoof(Zinc Roof) 0 1 Total
0 379 255 634
48.22 32.44 80.66
59.78 40.22
77.82 85.28
1 108 44 152
13.74 5.60 19.34
71.05 28.95
22.18 14.72
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of MetalRoof by MalariaPos

Statistic DF Value Prob

Chi-Square 1 6.6110 0.0101
Likelihood Ratio Chi-Square 1 6.8097 0.0091
Continuity Adj. Chi-Square 1 6.1414 0.0132
Mantel-Haenszel Chi-Square 1 6.6026 0.0102
Phi Coefficient -0.0917
Contingency Coefficient 0.0913
Cramer's V -0.0917

Fisher's Exact Test

Cell (1,1) Frequency (F) 379
Left-sided Pr <= F 0.0061
Right-sided Pr >= F 0.9965

Table Probability (P) 0.0026

Two-sided Pr <= P 0.0119

Sample Size = 786

Frequency Table of DurableWall by MalariaPos

Percent
Row Pct MalariaPos(Malaria RDT Positive)
Col Pct DurableWall(Durable Walls) 0 1 Total
0 258 159 417
32.82 20.23 53.05
61.87 38.13
52.98 53.18
1 229 140 369
29.13 17.81 46.95
62.06 37.94
47.02 46.82
Total 487 299 786
61.96 38.04 100.00

Statistics for Table of DurableWall by MalariaPos

Statistic DF Value Prob

Chi-Square 1 0.0030 0.9565
Likelihood Ratio Chi-Square 1 0.0030 0.9565
Continuity Adj. Chi-Square 1 0.0000 1.0000
Mantel-Haenszel Chi-Square 1 0.0030 0.9566
Phi Coefficient -0.0019
Contingency Coefficient 0.0019
Cramer's V -0.0019

Fisher's Exact Test

Cell (1,1) Frequency (F) 258
Left-sided Pr <= F 0.5078
Right-sided Pr >= F 0.5508

Table Probability (P) 0.0586

Two-sided Pr <= P 1.0000

Sample Size = 786

Unadjusted Model: IRSsprayed → Malaria

The LOGISTIC Procedure

Model Information
Data Set [Link]
Response Variable MalariaPos Malaria RDT Positive

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Model Information
Number of Response Levels 2
Model binary logit
Optimization Technique Fisher's scoring

Number of Observations Read 786

Number of Observations Used 786

Response Profile
Ordered Total
Value MalariaPos Frequency
1 1 299
2 0 487

Probability modeled is MalariaPos=1.

Class Level Information

Class Value Design Variables
IRSsprayed 0 0
1 1

Model Convergence Status

Convergence criterion (GCONV=1E-8) satisfied.

Model Fit Statistics

Criterion Intercept Only Intercept and Covariates
AIC 1046.222 1043.498
SC 1050.889 1052.832
-2 Log L 1044.222 1039.498

Testing Global Null Hypothesis: BETA=0

Test Chi-Square DF Pr > ChiSq
Likelihood Ratio 4.7233 1 0.0298
Score 4.7193 1 0.0298
Wald 4.7075 1 0.0300

Type 3 Analysis of Effects

Wald
Effect DF Chi-Square Pr > ChiSq
IRSsprayed 1 4.7075 0.0300

Analysis of Maximum Likelihood Estimates

Standard Wald
Parameter DF Estimate Error Chi-Square Pr > ChiSq
Intercept 1 -0.3285 0.1030 10.1640 0.0014
IRSsprayed 1 1 -0.3199 0.1474 4.7075 0.0300

Association of Predicted Probabilities and Observed Responses

Percent Concordant 29.1 Somers' D 0.080
Percent Discordant 21.2 Gamma 0.159
Percent Tied 49.7 Tau-a 0.038
Pairs 145613 c 0.540

Odds Ratio Estimates and Wald Confidence Intervals

Effect Unit Estimate 95% Confidence Limits
IRSsprayed 1 vs 0 1.0000 0.726 0.544 0.970

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Adjusted Logistic Model: IRSsprayed & Covariates

The LOGISTIC Procedure

Model Information
Data Set [Link]
Response Variable MalariaPos Malaria RDT Positive
Number of Response Levels 2
Model binary logit
Optimization Technique Fisher's scoring

Number of Observations Read 786

Number of Observations Used 786

Response Profile
Ordered Total
Value MalariaPos Frequency
1 1 299
2 0 487

Probability modeled is MalariaPos=1.

Class Level Information

Class Value Design Variables
IRSsprayed 0 0
1 1
BedNet 0 0
1 1
AgeGroup 1 0 0
2 1 0
3 0 1
Gender 1 0
2 1
Literate 0 0
1 1
MetalRoof 0 0
1 1
DurableWall 0 0
1 1

Model Convergence Status

Convergence criterion (GCONV=1E-8) satisfied.

Model Fit Statistics

Criterion Intercept Only Intercept and Covariates
AIC 1046.222 953.584
SC 1050.889 995.587

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Model Fit Statistics
Criterion Intercept Only Intercept and Covariates
-2 Log L 1044.222 935.584

Testing Global Null Hypothesis: BETA=0

Test Chi-Square DF Pr > ChiSq
Likelihood Ratio 108.6377 8 <.0001
Score 103.5159 8 <.0001
Wald 94.6308 8 <.0001

Type 3 Analysis of Effects

Wald
Effect DF Chi-Square Pr > ChiSq
IRSsprayed 1 7.7782 0.0053
BedNet 1 0.1771 0.6739
AgeGroup 2 85.5661 <.0001
Gender 1 0.0201 0.8873
Literate 1 0.5300 0.4666
MetalRoof 1 7.9114 0.0049
DurableWall 1 0.1119 0.7379

Analysis of Maximum Likelihood Estimates

Standard Wald
Parameter DF Estimate Error Chi-Square Pr > ChiSq
Intercept 1 0.7105 0.3841 3.4217 0.0643
IRSsprayed 1 1 -0.4459 0.1599 7.7782 0.0053
BedNet 1 1 -0.1458 0.3465 0.1771 0.6739
AgeGroup 2 1 -0.7627 0.2949 6.6865 0.0097
AgeGroup 3 1 -1.6031 0.1737 85.2263 <.0001
Gender 2 1 -0.0249 0.1758 0.0201 0.8873
Literate 1 1 -0.1318 0.1810 0.5300 0.4666
MetalRoof 1 1 -0.6290 0.2236 7.9114 0.0049
DurableWall 1 1 0.0576 0.1720 0.1119 0.7379

Association of Predicted Probabilities and Observed Responses

Percent Concordant 70.8 Somers' D 0.436
Percent Discordant 27.2 Gamma 0.444
Percent Tied 2.0 Tau-a 0.206
Pairs 145613 c 0.718

Odds Ratio Estimates and Wald Confidence Intervals

Effect Unit Estimate 95% Confidence Limits
IRSsprayed 1 vs 0 1.0000 0.640 0.468 0.876
BedNet 1 vs 0 1.0000 0.864 0.438 1.705
AgeGroup 2 vs 1 1.0000 0.466 0.262 0.831
AgeGroup 3 vs 1 1.0000 0.201 0.143 0.283
Gender 2 vs 1 1.0000 0.975 0.691 1.377
Literate 1 vs 0 1.0000 0.877 0.615 1.250
MetalRoof 1 vs 0 1.0000 0.533 0.344 0.826
DurableWall 1 vs 0 1.0000 1.059 0.756 1.484

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Partition for the Hosmer and Lemeshow Test

MalariaPos = 1 MalariaPos = 0
Group Total Observed Expected Observed Expected
1 84 20 11.90 64 72.10
2 87 14 15.61 73 71.39
3 82 14 18.30 68 63.70
4 83 21 21.62 62 61.38
5 82 25 27.76 57 54.24
6 91 37 43.16 54 47.84
7 76 37 39.27 39 36.73
8 89 55 49.92 34 39.08
9 112 76 71.46 36 40.54

Hosmer and Lemeshow Goodness-of-Fit Test

Chi-Square DF Pr > ChiSq
12.2842 7 0.0916

Interaction: IRSsprayed × BedNet

The LOGISTIC Procedure

Model Information
Data Set [Link]
Response Variable MalariaPos Malaria RDT Positive
Number of Response Levels 2
Model binary logit
Optimization Technique Fisher's scoring

Number of Observations Read 786

Number of Observations Used 786

Response Profile
Ordered Total
Value MalariaPos Frequency
1 1 299
2 0 487

Probability modeled is MalariaPos=1.

Class Level Information

Class Value Design Variables
IRSsprayed 0 0
1 1
BedNet 0 0
1 1
AgeGroup 1 0 0
2 1 0

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Class Level Information
Class Value Design Variables
3 0 1
Gender 1 0
2 1
Literate 0 0
1 1
MetalRoof 0 0
1 1
DurableWall 0 0
1 1

Model Convergence Status

Convergence criterion (GCONV=1E-8) satisfied.

Model Fit Statistics

Criterion Intercept Only Intercept and Covariates
AIC 1046.222 951.526
SC 1050.889 998.195
-2 Log L 1044.222 931.526

Testing Global Null Hypothesis: BETA=0

Test Chi-Square DF Pr > ChiSq
Likelihood Ratio 112.6960 9 <.0001
Score 107.1334 9 <.0001
Wald 97.2028 9 <.0001

Joint Tests
Wald
Effect DF Chi-Square Pr > ChiSq
IRSsprayed 1 1.6502 0.1989
BedNet 1 1.1326 0.2872
IRSsprayed*BedNet 1 3.9238 0.0476
AgeGroup 2 84.4534 <.0001
Gender 1 0.0418 0.8379
Literate 1 0.7165 0.3973
MetalRoof 1 7.5786 0.0059
DurableWall 1 0.0660 0.7972

Note: Under full-rank parameterizations, Type 3 effect tests are replaced by joint tests. The joint test for an effect is a test that all the parameters associated with that effect are zero. Such joint tests might not be equivalent to
Type 3 effect tests under GLM parameterization.

Analysis of Maximum Likelihood Estimates

Standard Wald
Parameter DF Estimate Error Chi-Square Pr > ChiSq
Intercept 1 0.0834 0.5116 0.0266 0.8705
IRSsprayed 1 1 0.8951 0.6968 1.6502 0.1989
BedNet 1 1 0.5354 0.5031 1.1326 0.2872
IRSsprayed*BedNet 1 1 1 -1.4180 0.7158 3.9238 0.0476
AgeGroup 2 1 -0.7634 0.2963 6.6363 0.0100
AgeGroup 3 1 -1.5960 0.1740 84.1154 <.0001
Gender 2 1 -0.0361 0.1765 0.0418 0.8379
Literate 1 1 -0.1541 0.1821 0.7165 0.3973
MetalRoof 1 1 -0.6179 0.2244 7.5786 0.0059
DurableWall 1 1 0.0444 0.1727 0.0660 0.7972

Association of Predicted Probabilities and Observed Responses

Percent Concordant 71.0 Somers' D 0.440
Percent Discordant 27.0 Gamma 0.449
Percent Tied 2.0 Tau-a 0.208
Pairs 145613 c 0.720

Odds Ratio Estimates and Wald Confidence Intervals

Effect Unit Estimate 95% Confidence Limits
AgeGroup 2 vs 1 1.0000 0.466 0.261 0.833
AgeGroup 3 vs 1 1.0000 0.203 0.144 0.285
Gender 2 vs 1 1.0000 0.965 0.682 1.363
Literate 1 vs 0 1.0000 0.857 0.600 1.225
MetalRoof 1 vs 0 1.0000 0.539 0.347 0.837
DurableWall 1 vs 0 1.0000 1.045 0.745 1.466

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Partition for the Hosmer and Lemeshow Test

MalariaPos = 1 MalariaPos = 0
Group Total Observed Expected Observed Expected
1 79 17 10.83 62 68.17
2 79 14 13.71 65 65.29
3 78 13 15.99 65 62.01
4 83 19 21.85 64 61.15
5 79 24 24.64 55 54.36
6 66 26 28.89 40 37.11
7 81 37 39.98 44 41.02
8 84 41 43.64 43 40.36
9 89 59 54.34 30 34.66
10 68 49 45.12 19 22.88

Hosmer and Lemeshow Goodness-of-Fit Test

Chi-Square DF Pr > ChiSq
8.6184 8 0.3755

Model Diagnostics: Fit, ROC, HL Test

The LOGISTIC Procedure

Model Fit Statistics

Criterion Intercept Only Intercept and Covariates
AIC 1046.222 953.584
SC 1050.889 995.587
-2 Log L 1044.222 935.584

Association of Predicted Probabilities and Observed Responses

Percent Concordant 70.8 Somers' D 0.436
Percent Discordant 27.2 Gamma 0.444
Percent Tied 2.0 Tau-a 0.206
Pairs 145613 c 0.718

Hosmer and Lemeshow Goodness-of-Fit Test

Chi-Square DF Pr > ChiSq
12.2842 7 0.0916

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