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Gene Silencing Mechanisms in Organisms

The document discusses the role of the Golgi complex in sensing pro-apoptotic signals and its involvement in tooth eruption and osteoclast formation. It highlights research by Nakchbandi et al. that connects various cell types and mediators in the tooth eruption process, particularly the role of parathyroid hormone-related protein (PTHrP). Additionally, it touches on the phenomenon of post-transcriptional gene silencing (PTGS) across different organisms, emphasizing the shared molecular mechanisms involved in RNA interference.

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0% found this document useful (0 votes)
15 views1 page

Gene Silencing Mechanisms in Organisms

The document discusses the role of the Golgi complex in sensing pro-apoptotic signals and its involvement in tooth eruption and osteoclast formation. It highlights research by Nakchbandi et al. that connects various cell types and mediators in the tooth eruption process, particularly the role of parathyroid hormone-related protein (PTHrP). Additionally, it touches on the phenomenon of post-transcriptional gene silencing (PTGS) across different organisms, emphasizing the shared molecular mechanisms involved in RNA interference.

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sasi
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd

JOURNAL CLUB TIBS 25 – AUGUST 2000

organelle – the sensing and transduction


of pro-apoptotic signals. The Golgi
Tooth eruption capable of differentiating in the presence
of locally produced PTHrP. Inhibition of
complex, which lies at the heart of the this endogeneous PTHrP activity with a
secretory pathway, is in the ideal position Tooth eruption represents a unique rabbit anti-human PTHrP(1–34) antiserum
to sense changes in the cell that might example of two correlated, yet completely decreased the spontaneous formation of
indicate perturbations of cellular uncoupled, processes: the formation and osteoclasts to ,30% of the amount found
function. For example, many viruses resorption of bone. By the time a first in control experiments. Expression of
exploit the secretory pathway to their molar starts to be propelled into the oral PTH/PTHrP type I receptor in DF cells
own ends, and it might be that the cavity, the tooth is fully encased within makes them the likely target cells for the
localization of apoptotic signalling dense bone that gradually must be action of PTHrP. Using the fetal rat long-
pathways and effectors to the Golgi removed. Induction of osteoclastic bone bone resorption assay, Nakchbandi and
complex is a partial response. resorption on the coronal tooth co-workers demonstrated that the
Interestingly, many viruses encode surface is an early step in the tooth cultured DF cells could induce bone
inhibitors of apoptosis, which could be eruption pathway. However, the resorption in response to PTHrP by
necessary to evade the surveillance of the process of the onset and regulation secreting a soluble unidentified mediator.
Golgi complex. As the authors of this of tooth eruption on a molecular level They could also show that induced DF
work point out, there is other is far from understood. cells were capable of upregulating the
circumstantial evidence that the Golgi Previous in vivo experiments have expression of osteoclast differentiation
complex might be an important player in provided convincing evidence that tooth factor (ODF) and downregulated its
apoptotic cell death. Golgi membranes eruption fails in the absence of inhibitory counterpart (OCIF). Because
are known to participate in some form of parathyroid hormone-related protein the ODF/OCIF system is known to be
ceramide signalling, and to contain a (PTHrP) action in the microenvironment critical to osteoblast-mediated
number of signalling proteins that are of the tooth. Which cells are responsible stimulation of osteoclasts, DF cells might
known to trigger apoptosis, such as the for the initiation of tooth eruption, and replace osteoblasts in the
tumour necrosis factor receptor. how do they achieve this challenging task microenviroment of the tooth, thus
Whatever the general consequences of its with the help of PTHrP? These questions providing a shortcut to osteoclast
localization, caspase-2 clearly plays a key were addressed by Nakchbandi and co- differentiation.
role in the destruction of the Golgi workers, who observed the spontaneous The work of Nakchbandi et al. connects
complex during apoptosis. formation of fully functional osteoclasts previous published data with newer
The golgins are a family of proteins in the absence of added PTHrP when findings and helps to develop a clear
identified as antigens in a variety of coculturing specialized epithelial and picture of the interplay of various cell
autoimmune conditions, the normal mesenchymal cells surrounding the types and the cascade of mediators
cellular function of which is thought to teeth1. Their work provides new insights allowing tooth eruption. However, certain
be in membrane traffic and maintaining into the process of tooth eruption and questions still remain. Is the DF-cell-
the structure of the Golgi complex. One into the regulatory network of interacting secreted soluble mediator related to ODF?
of these proteins emerges as a specific cells and mediators accompanying this What is the signal that induces SR cells to
target for caspase-2 early in apoptosis, event. increase the PTHrP expression level?
and in cells expressing a form of In a first step, Nakchbandi et al. Determination of the chemical nature of
golgin-160 where the cleavage site confirmed findings that epithelial stellum the soluble mediator might shed light on
has been abolished, the apoptotic reticulum (SR) cells start to produce this putative cellular differentiation factor
destruction of the Golgi complex is abundant amounts of PTHrP mRNA just and is likely to provide clearer insights
retarded. Clearly a case worthy of before tooth eruption, and that into the biochemistry of tooth formation.
further investigation! mesenchymal dental follicle (DF) cells
express mRNA of the PTH/PTHrP type I 1 Nakchbandi, I.A. et al. (2000) Parathyroid hormone-
1 Mancini, M. et al. (2000) Caspase-2 is localised at the receptor. Coculturing of murine DF and SR related protein induces spontaneous osteoclast
Golgi complex and cleaves Golgin-160 during cells resulted in spontaneous osteoclast formation via a paracrine cascade. Proc. Natl. Acad.
apoptosis. J. Cell Biol. 149, 603–612 formation in the absence of added Sci. U. S. A. 97, 7296–7300
osteoclast precursors and without the
FRANCIS A. BARR addition of exogenous PTHrP or vitamin D. PETER BAYER AND BIRGITTA BEATRIX
These data suggest that the primary
Email: [Link]@[Link] cultures contained osteoclast precursors Email: bayer@[Link]

Using genetic screens Mourrain et al.1


Making silence the appearance of short, 21–25-nt, RNAs
derived from the dsRNA itself, as well as and Dalmay et al.2 have now
degradation of any homologous cellular independently reported the discovery of
When challenged with certain nucleic acids mRNA. Intriguingly, following local a gene required for PTGS in Arabidopsis,
such as antisense RNA or transgenes, a initiation of silencing, the effect spreads which shares homology with
variety of organisms respond by silencing throughout the organism and can even be Caenorhabditis elegans and Neurospora
any genes that share homology with the maintained through subsequent crassa proteins previously shown to
foreign nucleic acid. This general generations. Researchers are using control RNAi and quelling, respectively.
phenomenon, originally discovered in genetics to identify the genes responsible These authors have therefore finally
plants where it was called co-suppression for the silencing mechanism and established a firm molecular link between
or post-transcriptional gene silencing biochemical assays to dissect their mode the silencing process in the three classes
(PTGS), also occurs in animal cells where it of action. Phenomenological evidence has of organism. It emerges that the three
is termed RNA interference (RNAi), as well been mounting that the event in animals, related genes resemble a plant protein
as in fungi where it is known as quelling. plants and fungi shares a very similar that has an RNA-directed RNA polymerase
The nucleic acid species that triggers pathway, although, until recently, no activity. It is therefore thought that the
silencing is double-stranded (ds) RNA, silencing genes common to all three role of these proteins is to amplify the
which, when introduced to a cell, leads to organisms had been discovered. RNA inducer of silencing. The

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Common questions

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The Golgi complex plays a dual role in cellular processes involving viral infection and apoptosis. It serves as a central hub for the secretory pathway, which many viruses exploit for maturation and assembly. In response to viral exploitation, the Golgi complex might localize apoptotic signaling pathways and effectors as a protective response. Many viruses have evolved mechanisms to inhibit apoptosis, likely to circumvent surveillance and destruction associated with the Golgi complex. Proteins such as caspase-2 are localized at the Golgi and are involved in its structural disruption during apoptosis. This implies a critical role for the Golgi in both sensing cellular stress and facilitating apoptotic pathways to limit pathogen spread. The strategic role of the Golgi provides an essential check on cellular integrity in response to internal and external stressors .

Golgins, which are proteins associated with the Golgi complex, have been identified as antigens involved in various autoimmune conditions. This association suggests that changes or dysregulation within the Golgi could trigger immune responses. During apoptosis, golgins, particularly golgin-160, are targeted and cleaved by caspase-2, demonstrating their involvement in the apoptotic process. The functional cleavage of golgin-160 and the ensuing structural changes in the Golgi could expose normally hidden antigens to the immune system, potentially linking the function of golgins during apoptosis to their role in autoimmunity. Furthermore, because apoptosis is a controlled process of cellular destruction, any malfunction in golgins' regulation might modulate immune surveillance and response .

During tooth eruption, specific cellular interactions between dental follicle (DF) cells and stellum reticulum (SR) cells enable the differentiation of osteoclast precursors. SR cells increase their production of parathyroid hormone-related protein (PTHrP) mRNA prior to tooth eruption. DF cells express the PTH/PTHrP type I receptor, making them responsive to PTHrP signaling. This facilitates DF cells to secrete a soluble mediator, likely involved in upregulating osteoclast differentiation factor (ODF) and downregulating osteoclast inhibitory factor (OCIF), thus promoting osteoclast differentiation. This interaction suggests that DF cells, through paracrine signaling, substitute for osteoblast functions in bone metabolism specific to tooth eruption by orchestrating the local differentiation milieu .

Nakchbandi et al.'s findings on tooth eruption challenge the traditional view that bone resorption primarily relies on osteoblast-driven osteoclast activity. Their research demonstrated that dental follicle (DF) cells, rather than osteoblasts, play a pivotal role in initiating osteoclast formation in the absence of exogenous parathyroid hormone-related protein (PTHrP). DF cells upregulate osteoclast differentiation by secreting a soluble mediator in response to PTHrP, suggesting a distinct local regulatory mechanism within dental tissues. This aligns with a paracrine cascade unique to the microenvironment of teeth, thereby redefining our understanding of how resorption and formation occur independently yet concurrently during tooth eruption .

Double-stranded RNA (dsRNA) plays a central role in the gene silencing processes known as post-transcriptional gene silencing (PTGS) in plants, RNA interference (RNAi) in animals, and quelling in fungi. When introduced into a cell, dsRNA leads to the production of short RNAs, approximately 21–25 nucleotides in length, derived from the dsRNA itself. These short RNAs are critical in the degradation of homologous cellular mRNA. Despite the different terminologies across organisms, recent studies have shown a similar pathway for gene silencing in these organisms, suggesting a conserved mechanism. Researchers have identified genes necessary for PTGS in Arabidopsis that share homology with proteins in Caenorhabditis elegans and Neurospora crassa, which control RNAi and quelling, respectively, indicating a molecular link between the silencing processes in these groups .

The Golgi complex is strategically placed within cells to sense changes indicating perturbations in cellular functions. It is involved in apoptotic signaling, potentially as a localized pathway for signal transduction. Caspase-2, an enzyme involved in apoptosis, is localized at the Golgi complex and plays a role in its destruction. The golgins, a family of proteins associated with the Golgi complex, are identified as having roles both in maintaining Golgi structure and potentially in autoimmunity as antigens. One specific golgin protein, golgin-160, is targeted and cleaved by caspase-2 during apoptosis. When the cleavage site of this protein is modified, the apoptotic degradation of the Golgi complex is delayed, highlighting the specific function of golgins in apoptotic processes .

Recent findings on post-transcriptional gene silencing (PTGS) in Arabidopsis have enhanced our understanding of RNA-directed RNA polymerase (RdRP) activity involved in gene silencing. The identification of a gene required for PTGS in Arabidopsis that shares homology with RNAi and quelling controlling proteins in other organisms highlighted the potential role of RNA-directed RNA polymerases in amplifying RNA silencing signals. These proteins are thought to facilitate the production of additional double-stranded RNA, thereby enhancing the silencing efficiency by generating more short interfering RNAs (siRNAs) that target and degrade homologous mRNA. This discovery expands the concept of RNA silencing from a passive degradation mechanism to an active amplification process and suggests a unified role for RdRP activity across different biological systems and organisms .

Parathyroid hormone-related protein (PTHrP) plays a critical role in osteoclast formation, facilitating tooth eruption through a cascade of cellular interactions. Specialized epithelial cells known as stellum reticulum (SR) produce abundant PTHrP mRNA shortly before tooth eruption. Meanwhile, mesenchymal dental follicle (DF) cells express the PTH/PTHrP type I receptor, which enables them to respond to PTHrP signaling. This interaction likely promotes osteoclast formation, as demonstrated in co-culture experiments where DF and SR cells spontaneously generated functional osteoclasts without the need for added precursors or exogenous PTHrP. The DF cells, stimulated by PTHrP, secrete a soluble mediator that induces bone resorption and regulates the expression of osteoclast differentiation factor (ODF), enhancing osteoclast formation. This suggests DF cells may substitute for osteoblasts in creating a microenvironment conducive to osteoclast differentiation .

Understanding the shared pathways of gene silencing across different species has profound implications for multiple fields. It highlights the evolutionary conservation of regulatory mechanisms, underscoring the fundamental nature of RNA interference in cellular processes across life forms. This understanding facilitates the development of cross-species biotechnological applications, such as targeted gene therapies and pest resistance strategies in agriculture. Furthermore, it offers insights into the potential side effects and limitations of gene silencing technologies in medical treatments, shaping future research into RNA-based therapeutics. Recognizing common pathways also aids in the creation of universal models for studying gene regulation and epigenetic inheritance .

The discovery of a gene required for post-transcriptional gene silencing (PTGS) in Arabidopsis that is homologous to genes in Caenorhabditis elegans and Neurospora crassa is significant as it provides a molecular link between the silencing processes across plants, animals, and fungi. This suggests a conservation of the gene silencing mechanism across diverse organisms. Identifying homologous genes sheds light on the evolutionary conservation of fundamental biological processes and allows researchers to extrapolate findings from model organisms to other species. Furthermore, understanding the shared mechanisms opens doors to unified approaches in biotechnological applications, such as gene regulation and disease control, across different species .

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