Non-Gaussian State Space Models
Non-Gaussian State Space Models
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Biometrika(1994), 81, 1, pp. 115-31
Printed in Great Britain
SUMMARY
In this paper we suggest the use of simulation techniques to extend the applicability of
the usual Gaussian state space filtering and smoothing techniques to a class of non-
Gaussian time series models. This allows a fully Bayesian or maximum likelihood analysis
of some interesting models, including outlier models, discrete Markov chain components,
multiplicative models and stochastic variance models. Finally we discuss at some length
the use of a non-Gaussian model to seasonally adjust the published money supply figures.
Some key words:EM algorithm; Filtering; Metropolis algorithm; Seasonal adjustment; Smoothing; Unobserved
components.
1. MOTIVATION
The Gaussian state space form
Yt= Zt at + st, ?t - N(O, Ht),
xolYo'-Y..N(a010,Polo) (t=1,.
..,n),
where ocoIYo, ?t and il are independent for all t and s and Yt denotes the information
available at time t, has had an important role in time series in recent years (West &
Harrison, 1989). The columns of Gt will be subsets of the columns of I and are present
to ensure that Qt can be assumed to be positive definite even in cases where there are
identities in the transition equation. We will also always assume that Ht is positive definite.
Any small modification to the above form, such as removing Gaussianity from one
element of Ut, means the Kalman filter and the corresponding smoothing algorithms lose
their optimality properties, although occasionally some of the best linear qualities still
hold. This leaves the modeller with the difficulty of working with approximate filters,
which in turn tend to yield inconsistent parameter estimators.
In this paper we suggest ways of modifying the usual Gaussian filtering and smoothing
algorithms to produce exact results. We progress by example, only suggesting a new
framework, called a partial non-Gaussian state space, towards the end of the paper. The
examples we discuss include outlier models, multiplicative models, discrete Markov chain
components, and stochastic variance models. Finally we explore at some length the use
of a non-Gaussian model to seasonally adjust the published money supply figures.
2. OUTLIER MODELS
2 1. Student'st distribution
We focus on the local level model discussed by Harvey (1989, Ch. 2) and West &
Harrison (1989, Ch. 2), although similar types of results hold for more general unobserved
116 NEIL SHEPHARD
0-2
ctxl021~~~~ .0 X ~ ~
0.1
?'?LI-- v , I
5 10 15 20
Time
Fig. 1. Gibbs estimate, after displayed iterations; 'truth' line almost coincides with line
for 1000 iterations.
positive (Tierney, 1994). To initialise this sampler, it is only necessary to deal with w,
which can often be selected from its unconditional joint distribution, f(c)).
For the outlier model, f(O Ico, Yn)and f(owIx*, Yn)take on particularly attractive forms.
We exploit a result which will recur throughout the paper:
n-i
'
f(cxlw, I~~~)=f([Link],
f (?'IOJ, Yn) f (L?n '1,) fl
IOJ Yn) HXI
f (Lt ?t+ 2.
t+2S***Sgn . ng Yn)
t=1
n-i
'( ) H f 1t?t?,w
=f(cxnIw, t Yt). (3)
t=1
,IJ
at ILx*t +a,), Yt-N at It+ 9Ptit (5)
pt+11t Pt+?it
suggesting that the rest of the <stscan be simulated by progressing backwards, simulating
118 NEIL SHEPHARD
Hence the simulations from f(w Ix'*, Yn)simply involves the drawing of 2n independent x2
variables, while the independence of coltIYt,oc*and w-)2tIa*q,<t*- 1 suggests that this set-up
will yield a rapidly converging sampler.
To illustrate the multimove sampler, a series of length 200 was simulated using Cauchy
measurement errors and Gaussian transition errors, with a 2= 1 and aq2= 0-01. This is
displayed in Fig. 2(a). Both Gibbs and multimove samplers were used on these data,
running 250 parallel samplers and recording their state estimates after 5, 10, 50, 250, 500,
1000 iterations. The samplers were initialised using the unconditional distribution of the
co and ot = yt/2. The results are given in Figs 2(b) and (c). After 5 iterations the multimove
sampler is almost exact. This rapid convergence compares favourably with the Gibbs
sampler, which is slowed by the high correlation amongst the ocIYn.
2 2. Gaussianmixture distributions
The same type of argument can be used to deal with a time series model whose noise
is drawn from a Gaussian mixture; Harrison & Stevens (1976) call such a structure a
multiprocess model. There is a huge literature on this model (Pe-na & Guttman, 1988;
Kitagawa, 1989). Most existing solutions to this problem are inexact or involve great
computational expense.
Consider the local level model, which will be set up in the following way:
Yt= It + et(olt), et(olt) Iolt - N
N(0,O2 ),
1t = lt- 1+ t(wt),2t qt(w2t)I2tI-), N(0, (9)
150-
150
o100-
0
7 0~~~~~~~~~~~~ 50
5015 too 150 200
Time
10 -5~~~~~~~~~~~~~~~~~~~
-
2(bdibsspampl
ieratos 50--50 (c) Multimove
ssiae fe ipamp ieratos
--1000
0 50 100 Ct)lt= 200
1----50 0-
lE22 50 1, 15422 i0 0 10 - 5 0
The 8tatistical 250lyisothismodefollwspecislythsamlineasorthStue
0i 0.0 - 5
-10~~-T
12 ~ 2 l62 f l 20_141if0t=
Fig. 2. (a) Simulated series with Cauchy measurement error. (b) Gibbs estimate, after
displayed iterations. (c) Multimove estimate, after displayed iterations.
of success 01 and 02, respectively. The variances in the conditional distributions are
given by
2o if w1=, 2 2 fw~O
12 ili ()1=0
2~Et
=
2 if w =1, th1t=Lr2 if W2 = 1.
Thesttiticl naysi o tismodl olowsprciel the saelnsa2o h tdn'
120 NEIL SHEPHARD
As
f (0-)lt Iat*q Yt) cf (Yt IO-ltg Lxt*)f(0-)t)9
3. MULTIPLICATIVE MODELS
Suppose that w,tl t1 is Gaussian and not influencedby oxand that the observations
and states are linearin co.A simplecase of this is
Yt= t)t t + Et, ?t - NID(0, of),
axt=Lat-1+ijt, ijt-~NID(O, a2),9l
t = PW)ti- + St, St - NID(0, of),
which might be called a multiplicativestate space model. The partiallylinearstructureto
this model means the above argumentfor the Gaussianstates can be used [Link], if
we condition on the w then the model is a Gaussianstate space and so we can simulate
Then,conditioningon the Lx*,
LX*. the observationsand the transitionequationfor w make
up a Gaussianstate space and so we can simulateusing
n-1
*, Yn)=f(nIX* In) H f(wtl t?t+x1*, Yt).
f(OLILX (12)
t=1
Going to and from one group of states to the next yields a valid samplerso long as p < 1.
If p is positive then oclYnand wIYnwill be quite correlatedand so this samplermay take
some time to [Link],most of the correlationin 6 IYnhas been conditioned
out and so it will be much fasterthan the equivalentsingle-stepGibbs sampler.
0)t- 1 = ? (- i 01 1 8 ( 14)
Partial non-Gaussianstate space 121
The motivationfor this model is that the slope of the trend is eithery or y + f,, which in
the US GDP case correspondsto a recessionor boom. The slope state, (w, shifts with
probabilitiescontrolledby 01 and O2
The simulationfrom cxlw,Yncan be carriedout using (3). Using (12), the drawingof
randomvariablesfrom co X c*, Ynis also straightforward for the filteringequationstake on
the form, if we write at = (gx, * * *, ax)t,
-
pr (wtIcc'- 1, Yt- ) = pr (wtI'ot) 1) t- pr (wtIwt_- pr (wt_
- 11ot- ), (15)
pr (wtIxt, Yt)= pr (wt I t) oc pr (at, xt- 1 1Wt) pr (wt Ict- 1).
This is solublebecauseof the discretesupportof wt,whichmeans the summationand the
constant of proportionalitycan be [Link] equationsallow pr (wnlo*, Yn)to be
[Link] that is additionallyrequiredis the calculation
pr (wtl wt+1, *, Yn)ocpr (wtI x*t)pr (wt+i1 wt).
where zIo N(d - 1 2704,a2). We select )',. ..., w,Kt1,,1K... ltK and U2 to make the
approximation'sufficientlygood'. In practice,we might make the first 4 or 6 moments
agree exactly and requirethat the approximatingdensity lie within a certaindistanceof
the true density. See Titterington,Smith & Makov (1985, p. 133) for the appropriate
techniques.
Clearly,
log yt2 O)t, axt - N(at - 1 2704 + wt, a.2) (18)
wherew denotesthe singleelementof c, ... ., CK correspondingto time t. We can sample
122 NEIL SHEPHARD
from ocI , Y1',which has the same distribution as ocI, X,,, where X,, = (log y',... , log y2)'.
The second part of the multimove sampler requires us to simulate from
n n
f( X*,Xn) =Hf (tI IoC,log y2) H f(log yt2|, cX*)ft(t). (19)
t=1 t=1
We can simulate from w log y2, * using a rejection algorithm, drawing with replacement
w) from wl, ... ., OK with probability 7E1,... CK respectively.
f(CXlwYn)=f(oXnIwYn)H f XIcXt?+
1 (, Yt), (22)
t=1
which are all Gaussian densities. The first of them, f(oCXn, Yn),is given by the Kalman
filter, (6), while
Yt = ct + ej#t), Iot-
e-It N(O, o7- 1) ct = at-1 + llo
n NID(0O,
It (24)5
Partial non-Gaussianstate space 123
whereat1 is definedin (25). Here the logarithmof the measurementequationprecision
follows a randomwalk. Then
OtIo(*, Yt - G(at, bt), at = (Aat + 1, bt = (e-rtbt_-lt_-) + 1(yt - c*)2. (25)
t-1il)
We can use a rejectionalgorithmto simulatefrom
f (oIt I t*+ 1 o(* Yt) ocf (oit IIt* Yt)f(0t*+ 1Iw), (26)
which is straightforwardusing a gammarandomnumbergenerator.
Thusresultson simpleconjugatetime seriesmodelscan be exploitedinsidequitecompli-
cated models,wideningtheir use.
For more general f(wt I t- 1), the following cases may be useful.
Case 6-1: ot are serially independent. We can simulate from
n n
f(Lx) I X n)= H f (otIx?,t
I-x , Yt) Hc
1 f(yt I cx,o)t)f(xI|-1,
Ia t)f(o)t) (27)
t=l t=l
using a rejection algorithm if we can boundf(yt I?C*, wt)f(xc* Ia* 1, wt). If this is not possible
then we can fall back on the use of the Metropolisalgorithm.
Case 6 2: Univariategeneral case. In general for a nonconjugate OtIo
-o we can use a
single-stepGibbs samplerbased on the conditionals
f (O-t IO-t*-1 O-t + 1 ?5CX* Yn)= f(O-t IO-t*-1 5 O-t + 1 5 Yt)
Xt*-1 5 CXt*
working our way forwardsthrough the data, simulating01, ... ., On in turn. Ways of
carryingout rejectionsamplingfrom densitiessuch as these are discussedby Carlinet al.
(1992). When this is not directly possible then the Metropolis algorithmcan be used
(Shephard,1993).
When wt is multidimensional the problems of drawing random variables from the
relevant densities becomes much harder and probably should be addressedon a case
by case basis.
Since oc() 1 is Gaussian there exist exact smoothing algorithmsfor the mean and
Y
124 NEIL SHEPHARD
varianceof this [Link] single pass of the Kalmanfilter,the backwards
smoothingrecursionstake on the form
etln = Yt - Ztatln ntln = atln--Tatj1n atln = atlt-l + Ptlt-lrt-1,
P= P
l-Ptjt_jNt_jPtjt_ , rt1 = ZtF71vt + L'rt, Nt-V = ZtF7'Zt + L'NtLt
(29)
(De Jong, 1989). The Kalmanfilterwill alreadyhave been run in orderto carryout the
simulationsof cxw, Ynand so this adds no extra [Link] smoothingalgorithmshere
are more computationallyinvolved than the Kalman filter;howeverthe cost of running
them is still small comparedto the expenseof the drawingof the simulations.
In general,analytic smoothing algorithmsfor wlxo*,Y1'will not exist and so simpler
averagesof the replications (i) will sometimeshave to be used in reportingsummaries
of 1Yn.
Also
f(YtlIYt-1; 0) f
W(ytI lQt-1 Yt-1; O)f(ft- 11 Yt-1) MQt-
1 (30)
8. PARAMETRICESTIMATION
8 1. General
It is importantto presentmethodswhich deal effectivelywith the unknownparameters
0. We discusstwo ways;a Bayesianapproachand a simulatedEMalgorithm.
The Bayesianapproachhas been well documentedelsewhere(Smith& Roberts,1993),
and so we discussit only [Link] requiresthe specificationof a priorover 0, written
f0(O).Then the multimovesampleris amendedas follows:
Partial non-Gaussianstate space 125
Multimove Bayesian sampler
1. Generatea candidatepoint 3= (oc',a', 0')'.
2. Draw o* from the densityf(c Iw, 0, Yn).
2. Draw w* from the densityf(w Ioc*,0, Yn).
4. Draw 0* from the density f(0 Io)*, c*, Yn).
5. Write 3 (a*', w*', 0*')' and go to 2.
This samplerwill convergeto replicationsfrom 6 IYnwhich will contain drawingsfrom
the posteriordensity [Link] posteriordensitycan be estimatedby
M
M-1 YEf(oO IO)i), 2(i), Yn
i=l
8 2. EM algorithm
An alternativeapproachto find the maximumlikelihood estimatoruses an EM algor-
ithm. This follows naturallyfrom using smoothingtechniques.
Recall
0) = log f (, I YO;
log f (yI YO; 0) -log f (b Yn;0), (31)
so that integratingboth sides with respectto the smoothingdensityf(b IYn;O%,where O'
is some arbitrarypoint, gives
109f(yn I YO;0) = Q (f0 ffil Yn)-H(05, Oil Yn)5 (32)
where
IYO;O)f(bIYn;0') d3,
Q(0, OilYn)= flogf(65 Yn (33)
where
(Harvey, 1989, p. 188). We focus on the special case where all the parametersin the
Gaussian measurementand transitionequations are in the matricesHt and Qt. Then,
126 NEIL SHEPHARD
suppressingdependenceon w, we can follow Koopman (1993) in writing
1 n 1 n
R(,5O')= - E log 1H(0)1-- E tr [H,()1 fe,lne'ln+cov (E- e,n)1]
2 t=1
t12 t=
t=1
1n 1n
- E
Z log IQt(0)l - - Z tr [Qt(0)-1 {nt1n;n
+ cov ('t-ntln)}], (37)
2
t=l 2 t=1
where E(etI, 5Yn)=et In and E(tI, Yn)= ntn. These terms, and the others in the above
formula,are computedrecursivelythrough
etln= Htet, cov (et- etln) =Qtrt- 38
where they are calculatedby first runningthe Kalman filter,(6), and then startingwith
rn= 0 and Nn= 0 using the backwardsrecursions
et= F-lvt-Krt, = Z'F-1vt + L'rt,
rti
D~=F7'+N~K~, N1=ZF7'Z+LNtLt
Dt=F-1 + K'NtKt, Nt-, = Z'Ft-'Zt + LtNtLt..(39)
8 3. SimulatedEM algorithm
We can estimateQ(0, OilYn)by usingsimulationsfromo IYn;[Link]
have been used by, amongst others,Bresnahan(1981), Celeux & Diebolt (1985), Wei &
Tanner(1990), Tanner(1991), Qian & Titterington(1991) and Shephard(1993). So
-
Q(0, o'lYn)= Z {R(05,Oldii), Yn)+ log1f(0O);O)}, (40)
6 0003
5-
0.02-
0~~~~~~~~~~~~00
-
2)
0 0.00
0 20 40 60 80 0 20 40 60 80
Time Time
Fig. 3. Quarterly changes (a) in UK first difference M4 (? billions): 63Q2 to 82Q4, and
(b) in log of first difference M4.
2-
0,010 0
o o~~~~~~~~~~~~~~~'
0 ~~~~~~~20.005
CeTYim Time
-0-010
-2
20 40 60 80 20 40 60 80
C- 1ii4
TimeHjtj
11.11t +II C,C IDO r Time
Fig. 4. Innovations (a) from linear model and corresponding 95% intervals, (b) from log-
*t =-.t 1-_ -t-3+O* O*~NDO 2*
linear models and 95% intervals.
uni (42),
e (45 liiib ad ttoar ytasfrain
model. To try to improve the fit of the linear model we exploit a mixed multiplicative-
additive unobserved component model. The model we use is
the trend up and down by scaling. The total seasonal effect is Likewise
o the irregular
term in
wheres this model
required is [Link]'+,et, making it heteroscedastic.
[Link] allvt,gs,cu,wv,lidand].
?I
Noticelthat
This is an example of the multiplicative models discussed briefly in ? 3. We can ~~~~~(45) write
The V V to
T- 2 9'St*)' place
sitemulatipMlicaitive
Ot= (Vt* Tt- i, the
seasoa model
effectinto
and its
penfrprmtersh
partial non-Gaussian
moelstiapootion, state space. So
movingn
long
wheestas
of the
the variances are all strictly
irreul ad_arcmoen hasspositive
goned the multistep Gibbs
frc allouts landwill
u sampler
for the ge converge
Noincretase
indepndet*
to its required distribution. In practice the rate of convergence will depend crucially on
inthe l*iseiodoe
a,a low value rendering h iermdl the multiplicative
the algorithm hrelatively seasonal
aineo slow.
efcanetrshemdlsapootion moving
The simulated Em algorithm was used to perform parameter estimation, yielding
0O004, 0
=O0949 2 0-01,9~ 0.00005, 0-* 003, log L(O)=- 62.
(46)
Most of the irregular component has gone into s* which accounts for the large increase
in the likelihood over the linear model. The variance of the multiplicative seasonal is lower
Partial non-Gaussianstate space 129
(a) Innovations, nonlinear (b) Uniform innovations
_10
3
2 ~~~~~~~0.8
con
O4a
0 ~ ~ ~ TiII
~ ~ IT~~~0 11
Fig. 5. (a) Innovations from fitted nonlinear model and twice their mean squared errors.
(b) Uniform innovations, from Fig. 3.
this fitted model does not exhibit a dramaticallymore stable seasonal patternthan the
linear one. The varianceon the randomwalk part of the trend has fallenfourfold,while
the slope variancehas increasedto [Link] will see below that this implies
that the estimatedtrendis discerniblysmootherthan for the linearmodel.
The raw innovations from the fitted model, based on Yt-Yt It-l (t =6,... ,79),
and twice theirmean squarederrorsare given in Fig. 5(a). The innovationsare not nor-
mally [Link] varying mean squarederrors are the effect of the multiplicative
irregularterm.
Figure5(b) is statisticallymore [Link] is generatedby using the model to
randomlyproduce 1000 one-step ahead forecasts,for each t, and then recordinghow
many of these were smallerthan the actual observations.A naive diagnosticcan then be
based on the hypothesisthat they should be independentlyuniformlydistributedon the
inverval0 to 1 if the model is good: naive in that this distributiondoes not take into the
account that 5 parametershave been estimated;95%/ intervalsare also drawn on this
figureand indicatethat the scatterof large or small forecastsis not obviouslyunusual.
The uniformvariablesdisplayedin Fig. 5(b) can also be mapped back into N(0, 1)
[Link] used to constructcorrelogramsand probability
plots to check for remainingstructurein the data. They show very little [Link]
collectivelythis batteryof diagnosticgraphs suggeststhat the model has fitted the data
well, probablybecauseof the additionof the multiplicativeirregularterm.
The estimatedtrendsfor the linearand nonlinearmodels are given in Fig. 6; the results
for the log-linearmodel are similarto the [Link] suspected,the nonlinearmodel trend
is [Link] more interestis the estimatedseasonalcomponentgiven in
Fig. 7. Therethe linearmodel componentis ratherdifferentat the beginningof the series
but is quite close to the nonlinear one at the end. Altogether the linear model does
surprisinglywell, given how poorly it actuallyfits the data.
130 NEIL SHEPHARD
6-
Ce
Ce
2
0-
o- I * * *~~~~~~~I
* **
0 20 40 60 80
Time
Fig. 6. Actual and estimated trend, linear (solid line) and nonlinear (dotted line).
-1
0 20 40 60 80
Time
Fig. 7. Estimated seasonal pattern, linear (points) and nonlinear (dotted line).
ACKNOWLEDGEMENTS
The author would like to thank the refereeand the editor for their detailed and very
constructivecommentson the previousversionsof this paperand RobertKohn and Brian
Ripleyfor some [Link] researchwas supportedby a grantfromthe ESRC.
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