_________________________________________________________________________________

Rashtreeya Sikshana Samithi Trust's

Rashtreeya Vidyalaya Institute of Technology

and Management (RVITM), Bengaluru

BIOLOGY FOR ENGINEERS (BBOK407)

SEMESTER- IV

Module-II

Module II BIOMOLECULES AND THEIR APPLICATIONS RBT

(QUALITATIVE): Levels
Carbohydrates (cellulose-based water filters, PHA and PLA as bioplastics), Nucleic L1, L2
acids (DNA Vaccine for Rabies and RNA vaccines for Covid19, Forensics – DNA
fingerprinting), Proteins (Proteins as food – whey protein and meat analogs, Plant
based proteins), lipids (biodiesel, cleaning agents/detergents), Enzymes (glucose-
oxidase in biosensors, lignolytic enzyme in bio-bleaching).

IV-Semester, Biology for Engineers (BBOK407) Page1 | 46

_________________________________________________________________________________

Contents
2.1 Biomolecules .................................................................................................................................... 4
2.2 Types of Biomolecules..................................................................................................................... 4
2.3 Carbohydrates ................................................................................................................................. 4
2.3.1 Classification of Carbohydrates ............................................................................................. 5
A. Simple Carbohydrates (Monosaccharides, Disaccharides and Oligosaccharides) .......... 5
1. Monosaccharides ....................................................................................................................... 6
2. Disaccharides ............................................................................................................................. 6
3. Oligosaccharides ....................................................................................................................... 7
B. Complex Carbohydrates (Polysaccharides)........................................................................ 7
2.3.2 Functions of Carbohydrates .................................................................................................... 8
1.3.3 Sources of Carbohydrates ....................................................................................................... 8
Examples of Carbohydrates ............................................................................................................. 9
2.4 PLA Bioplastics ......................................................................................................................... 10
2.5 Polyhydroxyalkanoate (PHA) ................................................................................................. 14
2.5.1 Microplastics in water ........................................................................................................... 14
iii) Toxic air ..................................................................................................................................... 15
2.5.2 Is PHA a biodegradable plastic?........................................................................................... 15
2.5.3 What can PHA plastic be used for ........................................................................................ 15
2.6 cellulose-based water filters ......................................................................................................... 17
2.6.1 Methods ............................................................................................................................... 18
2.7 Proteins .......................................................................................................................................... 19
2.7.1 Protein Structure ................................................................................................................... 19
Fig. 27 Protein Structure ................................................................................................................ 19
2.7.2 Types of Proteins and Their Functions ................................................................................ 20
Functions of Proteins ...................................................................................................................... 20
2.7.6 What Plants Are High in Protein?........................................................................................ 24
2.7.7 Why Protein Is Important? ................................................................................................... 24
2.7.8 What Is Protein Combining? ................................................................................................ 25
2.7.9 How to Adopt a Plant-Based Diet? ....................................................................................... 25
2.8 Nucleic Acids ................................................................................................................................. 27

IV-Semester, Biology for Engineers (BBOK407) Page2 | 46

_________________________________________________________________________________
2.8.1 DNA ......................................................................................................................................... 29
Brief Insight into the Structure and Composition of DNA ..................................................... 29
2.8.2 Types of DNA ..................................................................................................................... 30
2.8.3 RNA ......................................................................................................................................... 30
2.8.4 Types of RNA ..................................................................................................................... 31
2.9 Lipids.............................................................................................................................................. 35
What are Lipids? ............................................................................................................................... 35
2.9.1 Properties of Lipids................................................................................................................ 35
2.9.2 Lipid Structure ....................................................................................................................... 36
2.9.3 Classification of Lipids .......................................................................................................... 36
A. Nonsaponifiable Lipids ....................................................................................................... 36
B. Saponifiable Lipids ............................................................................................................. 36
1.16.4 Types of Lipids ..................................................................................................................... 37
[Link] Lipids ........................................................................................................................... 37
[Link] Lipids ........................................................................................................................ 37
C. Precursor and Derived Lipids ............................................................................................ 38
2.10 Biodiesel ................................................................................................................................... 38
2.12 Enzymes ....................................................................................................................................... 43
2.12.1 Enzymes Structure ............................................................................................................... 43
2.12.2 Enzymes Classification ........................................................................................................ 44

IV-Semester, Biology for Engineers (BBOK407) Page3 | 46

 _________________________________________________________________________________

2.1 Biomolecules
Biomolecules are the most essential organic molecules, which are involved in the maintenance and
metabolic processes of living organisms. These non-living molecules are the actual foot-soldiers of
the battle of sustenance of life. They range from small molecules such as primary and secondary
metabolites and hormones to large macromolecules like proteins, nucleic acids, carbohydrates,
lipids etc.

2.2 Types of Biomolecules

Fig. 2.1 Types of Biomolecules

There are four major classes of Biomolecules – Carbohydrates, Proteins, Nucleic acids and Lipids.
Shown in Fig. 2.1. Each of them is discussed below.

2.3 Carbohydrates

Carbohydrates are chemically defined as polyhydroxy aldehydes or ketones or compounds which

produce them on hydrolysis. In layman’s terms, we acknowledge carbohydrates as sugars or
substances that taste sweet. They are collectively called as saccharides (Greek: sakcharon = sugar).
Depending on the number of constituting sugar units obtained upon hydrolysis, they are classified
as monosaccharides (1 unit), oligosaccharides (2-10 units) and polysaccharides (more than 10 units).
They have multiple functions’ viz. they’re the most abundant dietary source of energy; they are
structurally very important for many living organisms as they form a major structural component,
e.g. cellulose is an important structural fibre for plants. Carbohydrates are macronutrients and are
one of the three main ways by which our body obtains its energy.

IV-Semester, Biology for Engineers (BBOK407) Page4 | 46

 _________________________________________________________________________________
They are called carbohydrates as they comprise carbon, hydrogen and oxygen at their chemical
level. Carbohydrates are essential nutrients which include sugars, fibers and starches. They are
found in grains, vegetables, fruits and in milk and other dairy products. They are the basic food
groups which play an important role in a healthy life.

The food containing carbohydrates are converted into glucose or blood sugar during the process of
digestion by the digestive system.

Our body utilizes this sugar as a source of energy for the cells, organs and tissues. The extra amount
of energy or sugar is stored in our muscles and liver for further requirement. The term ‘carbohydrate’
is derived from a French term ‘hydrate de carbone‘ meaning ‘hydrate of carbon‘. The general
formula of this class of organic compounds is Cn(H2O)n. carbohydrates are shown in Fig. 2.2.

Fig. 2.2 carbohydrates food

2.3.1 Classification of Carbohydrates
The carbohydrates are further classified into simple and complex which is mainly based on their
chemical structure and degree of polymerization.

A. Simple Carbohydrates (Monosaccharides, Disaccharides and Oligosaccharides)

Simple carbohydrates have one or two sugar molecules. In simple carbohydrates, molecules are
digested and converted quickly resulting in a rise in the blood sugar levels. They are abundantly
found in milk products, beer, fruits, refined sugars, candies, etc. These carbohydrates are called
empty calories, as they do not possess fiber, vitamins and minerals.

Plants, being producers, synthesize glucose (C6H12O6) using raw materials like carbon dioxide and
water in the presence of sunlight. This process of photosynthesis converts solar energy to chemical

IV-Semester, Biology for Engineers (BBOK407) Page5 | 46

 _________________________________________________________________________________
energy. Consumers feed on plants and harvest energy stored in the bonds of the compounds
synthesized by plants.

1. Monosaccharides

Glucose is an example of a carbohydrate monomer or monosaccharide. Other examples of

monosaccharides include mannose, galactose, fructose, etc. The structural organization of
monosaccharides is as follows: (Fig. 2.3)

Fig. 2.3 structural organization of monosaccharides

Monosaccharides may be further classified depending on the number of carbon atoms:

(i)Trioses (C3H6O3): These have three carbon atoms per molecule. Example: Glyceraldehyde

(ii)Tetroses (C4H6O4): These monosaccharides have four carbon atoms per molecule. Example:
Erythrose.

(iii) Pentoses,
(iv) Hexoses, and
(v) Heptoses
2. Disaccharides
Two monosaccharides combine to form a disaccharide. Examples of carbohydrates having two
monomers include- Sucrose, Lactose, Maltose, etc. structural organization is shown in Fig. 2.4.

IV-Semester, Biology for Engineers (BBOK407) Page6 | 46

 _________________________________________________________________________________

Fig. 2.4 structural organization of two monosaccharides

3. Oligosaccharides

Carbohydrates formed by the condensation of 2-9 monomers are called oligosaccharides. By this
convention, trioses, pentoses, hexoses are all oligosaccharides.

B. Complex Carbohydrates (Polysaccharides)

Complex carbohydrates have two or more sugar molecules, hence they are referred to as starchy
foods. In complex carbohydrates, molecules are digested and converted slowly compared to simple
carbohydrates. They are abundantly found in lentils, beans, peanuts, potatoes, peas, corn, whole-
grain bread, cereals, etc.

Polysaccharides are complex carbohydrates formed by the polymerization of a large number of

monomers. Examples of polysaccharides include starch, glycogen, cellulose, etc. which exhibit
extensive branching and are homopolymers – made up of only glucose units. Shown in Fig. 2.5.

Fig. 2.5 Polysaccharides

1. Starch is composed of two components- amylose and amylopectin. Amylose forms the linear chain
and amylopectin is a much-branched chain.

IV-Semester, Biology for Engineers (BBOK407) Page7 | 46

 _________________________________________________________________________________
2. Glycogen is called animal starch. It has a structure similar to starch, but has more extensive
branching.

3. Cellulose is a structural carbohydrate and is the main structural component of the plant cell wall. It
is a fibrous polysaccharide with high tensile strength. In contrast to starch and glycogen, cellulose
forms a linear polymer.

2.3.2 Functions of Carbohydrates

The main function of carbohydrates is to provide energy and food to the body and to the nervous
system.

1. Carbohydrates are known as one of the basic components of food, including sugars, starch, and fibre
which are abundantly found in grains, fruits and milk products.

2. Carbohydrates are also known as starch, simple sugars, complex carbohydrates and so on.

3. It is also involved in fat metabolism and prevents ketosis.

4. Inhibits the breakdown of proteins for energy as they are the primary source of energy.

5. An enzyme by name amylase assists in the breakdown of starch into glucose, finally to produce
energy for metabolism.

1.3.3 Sources of Carbohydrates

1. Simple sugars are found in the form of fructose in many fruits.

2. Galactose is present in all dairy products.

3. Lactose is abundantly found in milk and other dairy products.

4. Maltose is present in cereal, beer, potatoes, processed cheese, pasta, etc.

5. Sucrose is naturally obtained from sugar and honey containing small amounts of vitamins and
minerals.

These simple sugars that consist of minerals and vitamins exist commonly in milk, fruits, and
vegetables. Many refined and other processed foods like white flour, white rice, and sugar, lack
important nutrients and hence, they are labelled “enriched.” It is quite healthy to use vitamins,
carbohydrates and all other organic nutrients in their normal forms.

IV-Semester, Biology for Engineers (BBOK407) Page8 | 46

 _________________________________________________________________________________
2.3.4 Carbohydrate Foods

Eating too much sugar results in an abnormal increase in calories, which finally leads to obesity and
in turn low calories leads to malnutrition. Therefore, a well-balanced diet needs to be maintained to
have a healthy life. That is the reason a balanced diet is stressed so much by dietitians.

Table 1.1 Differences between the good and bad carbohydrates.

Good Carbohydrates Bad Carbohydrates

High in Nutrients Low in nutrients

Moderate in calories High in calories

Low in sodium and saturated fats High in sodium and saturated fats

Low in trans-fat and cholesterol High in trans-fat and cholesterol

They are complex carbs. For instance: Foods considered bad carbs rarely have
Legumes, vegetables, whole grains, fruits, any nutritional value. Some of the foods
and beans. include white flour, rice, pastries, sodas
and processed foods.

Examples of Carbohydrates
Following are the important examples of carbohydrates:
● Glucose
● Galactose
● Maltose
● Fructose
● Sucrose
● Lactose
● Starch
● Cellulose
● Chitin

IV-Semester, Biology for Engineers (BBOK407) Page9 | 46

 _________________________________________________________________________________
2.4 PLA Bioplastics
Polylactic acid plastic, also named PLA plastic, is a type of polymer derived from renewable sources
like tapioca roots, cornstarch and sugarcane. Its properties are similar to synthetic plastic, and it is
eco-friendly. Hence it entered the plastic industry as a competitive commodity.

2.4.1 How are PLA bioplastics made?

Polylactic plastic is made by fermenting carbohydrate sources like sugarcane, maize or corn starch
under controlled conditions. The building blocks of PLA plastic, which is lactide monomer or lactic
acid, are later polymerized into PLA.

In the beginning, the starch gets separated when sugarcane goes through wet milling. Afterwards, it
gets mixed with enzymes or acid and then it is heated. The heating procedure converts starch into
corn sugar or Dextrose. Finally, the derived sugar produces L- Lactic acid, the fundamental
component of PLA plastic.

2.4.2 Types of PLA bioplastics

There are many types of PLA plastics, but few important ones are regular Poly L-lactide (PLLA),
racemic Poly L-lactic Acid (PLLA), Poly DL- Lactic Acid (PDLLA) and Poly D-lactic Acid
(PLDA).

Though all the types of PLA plastics are made up of the same renewable source – lactic acid, the
orientation of atoms are different in these types. Also, the physical and chemical properties slightly
vary in all of them.

2.4.3 Uses of PLA bioplastics

PLA bioplastic has a wide range of applications in various sectors like textiles, packaging, medical,
cosmetics and so on. Some of the uses of PLA plastic are:

i) Medical

Since PLA bioplastics are biodegradable and biocompatible, it has vital importance in the medical
industry. The healthcare industry uses polylactic acid plastic in manufacturing tissue engineering
stages and bone fixation devices like plates, screws, rods, pins, surgical equipment and meshes. Its
adaptability with minimum infection and inflammation has membrane applications like covering
wounds and making stitches plastic. Besides, PLA plastics are also used to deliver medical

IV-Semester, Biology for Engineers (BBOK407) Page10 | 46

 _________________________________________________________________________________
materials, medical implants and are used in various dermatological procedures like scar rejuvenation
and facial lipoatrophy.

ii)Textiles

In the textiles and apparel industry, efforts have been made to replace synthetic polyester textiles
with renewable textiles. Due to its lightweight, recyclability, good resistance to sun rays, and
breathability, PLA plastic is used to make carpets, beddings, shirts and sportswear. Since PLA
plastic has low smoke generation characteristics, it is also used to manufacture insulating materials,
garbage bags, and protective foams.

iii) Cosmetics

As a result of consumer awareness regarding synthetic plastic pollution, cosmetic industries are now
shifting towards PLA biodegradable plastics. Products like cotton buds, razors, hairbrushes,
toothbrushes and diapers are made using polylactic acid plastics.

iv) Packaging and disposable

PLA bioplastics are typically safe for packaging food, and it is also approved by the Food and Drug
Administration (FDA). Though it can discharge lactic acid when it comes in contact with certain
liquids, its concentration does not harm humans.

In the form of rigid thermoforms, PLA bioplastic is used to manufacture yoghurt pots, meat trays,
bakery, herbs and candy containers, coffee lids, cold drink cups, fruit and vegetable clamshells. In
the bottling sector, it is used to make milk bottles with a short shelf life, edible oil bottles and mineral
water bottles.

As films, it is used as a wrap for flowers and candy twists, making lamination films, display carton
windows, tapes, bread bags, cake mix pouches, die-cut labels, and envelopes.

v) Structural uses

Due to its durability, high heat resistance and hydrolytic stability, biobased PLA plastic is used in
making structures for electrical and electronic appliances.

It has significant use in the automobile industry and is used for manufacturing high-end cars’ wheel
covers, translucent roofs, under the hood parts and safety helmets.

IV-Semester, Biology for Engineers (BBOK407) Page11 | 46

 _________________________________________________________________________________
PLA bioplastics are also suitable for making pillow covers, floor mats, door trims, ceiling material
and front panels due to their superior tensile strength.

2.4.4 Advantages of PLA Bioplastics

PLA plastic has many benefits as compared to competing polymers, and that’s why manufacturers
prefer it. Some of them are:

● PLA plastics are derived from biomass, thus it is biodegradable and more environmentally
friendly.
● As compared to other plastic production, PLA plastics require less energy to produce.
● When polylactic plastic degrades, it transforms into natural materials like carbon-di-oxide,
water which reduces plastic waste.
● Since PLA is a thermoplastic, it can be melted, recycled and reshaped without changing
its chemical properties.
● It is carbon neutral, which means it doesn’t emit carbon dioxide into the atmosphere when
recycled.
● PLA is non-toxic, that’s why it is used in the food packaging and medical industry.
● When oxygenated, it does not produce any toxic fumes as synthetic plastics do.
● It has a smoother, shinier and glossy appearance; hence it is used in textiles and automobile
industries.
● PLA plastics emit a sweet smell in the printing process and can easily be printed even on
a cold surface.
● As compared to other bioplastics like polyhydroxyalkanoate (PHA), poly γ-caprolactone
(PCL) and polyethylene glycol (PEG), it has better thermal manufacturability.

2.4.5 Disadvantages of PLA Bioplastics

Though PLA plastics have many applications and unique properties it also has some disadvantages
like:

● If PLA plastics do not get the ideal temperature and pressure, it does not degrade and takes
around 100 to 1000 years to decay.

IV-Semester, Biology for Engineers (BBOK407) Page12 | 46

 _________________________________________________________________________________
● As compared with other bioplastics, PLA has a lower glass transition temperature of 55
degree Celsius.
● Unless mixing PLA with other polymers, it is primarily more brittle and ductile.
● PLA bioplastics also have a lower crystallization rate and strength as compared to
petroleum-based plastics.
● Mixing PLA bioplastics with synthetic plastic could contaminate the recycling procedure
as it has different chemical properties. Hence, during the recycling process, it should be
separated from traditional plastic.
● It is thermally unstable and also has poor gas barrier characteristics.
● It has a high production cost.

2.4.6 Properties of PLA Plastics

Due to its similar properties as petroleum-based plastics, PLA plastic is a great biodegradable
alternative. Some of the characteristics of Polylactic acid plastics are:

i) Thermal Properties

The thermal properties of PLA bioplastic usually depend upon its molecular weight, thus, it is
classified as a semi-crystalline polymer. It has a high melting point of 180 degree Celsius but a low
glass transition temperature of 55 degree Celsius. It is ultraviolet rays resistant and has low smoke
formation and flammability during its production.

ii) Mechanical properties

PLA plastics have high mechanical strength and resistance with a good appearance compared to
other polymers like polyurethane, polystyrene and polypropylene. The tensile strength, flexural
strength and ‘Elongation at break’ of PLA plastics are also better than other bioplastics.

iii) Rheological properties

PLA bioplastic is non-Newtonian fluid and pseudoplastic, which means the change of viscosity
depends upon the stress applied to it. Also, when tension is applied to it, its viscosity decreases.

2.4.7 Is PLA plastic sustainable?

In a broader sense, PLA plastics are sustainable as it comes from renewable sources. However, PLA
plastics require precise temperature and pressure to degrade. In the degradation process of PLA

IV-Semester, Biology for Engineers (BBOK407) Page13 | 46

 _________________________________________________________________________________
plastic first, it needs to be heated at 60 degree Celsius. Then it should be exposed to particular
microorganisms which digest the plastic and decompose it.

Secondly, PLA plastics need to be sorted out when recycling as they can’t be recycled with other
plastics due to their different chemical properties. This increases the cost of transportation for
bioplastic companies.

2.5 Polyhydroxyalkanoate (PHA)

Biodegradable plastic called PHA, which stands for Polyhydroxyalkanoate, is a type of polymer
produced by bacteria. Therefore, it can easily disintegrate in the environment. Certain bacteria
produce PHA when they are under stressed conditions. PHA can be used in many different
applications. They can also be modified and improved to suit our needs. Each year more and more
types of bacteria producing PHA are identified.

In present times we use plastic almost everywhere and therefore it is important to replace plastic
which is non-degradable with biodegradable, such as PHA. Plastic is not only used to produce
plastic bags, disposable forks, spoons or PET plastic bottles. Very important field is also the medical
and pharmaceutical field. There is also a possibility to use PHA in agriculture. Decomposition in
nature of non-biodegradable plastics can take between hundreds of years to thousands of years. It is
also one of the largest sources of pollution in oceans. Plastics that are not disposed properly pollute
not only water but also air and soil. Some plastics are burned and this produces toxins in the air
which can cause respiratory problems but also neurological diseases. Also animals suffer when they
eat pieces of plastic and die due to this. Plastic can degrade by ultraviolet light from the sun into
very small particles called microplastics. They are also dangerous because they are too small to be
collected but they do harm to animals. It is predicted that by 2050 there will be more plastic in the
oceans than fish.

2.5.1 Microplastics in water

i) What are microplastics?

Small pieces of plastic from disintegrated bigger plastic objects.

ii) How does microplastic affect the ocean?

IV-Semester, Biology for Engineers (BBOK407) Page14 | 46

 _________________________________________________________________________________
Aquatic life and birds can mistake microplastics for food. Also microplastics can absorb harmful
chemicals and they can contaminate water or make harm to aquatic animals.

iii) Toxic air

Toxic air can cause problems with babies’ brain development with lifelong implications, children’s
learning and development. Pollutants are harmful for babies’ lungs development. For adults toxic
air can cause respiratory problems and even be a cause of death.

2.5.2 Is PHA a biodegradable plastic?

Yes PHA is biodegradable because it is created naturally inside bacteria and also PHA plastic can
be degraded naturally by microorganisms. PHAs are synthesized by many different bacteria as
carbon and energy storage capsules.

PHA was discovered for the first time in 1926 in one type of bacterium called Bacillus megaterium.
First efforts to use PHB (a type of PHA) commercially was in the 1950s. However, the process of
PHB production was not so easy and unprofitable. Later in 1970 a company called Biopol started
production of PHA. Later other companies also started the production process. Since this time there
have been over 150 different types of PHAs discovered. PHA plastics can also be modified in order
to make them more stiff or brittle.

PHAs are not only biodegradable plastics but also thermoplastics. Their melting temperature is
between 50°C and 180°C. PHAs molecules are not toxic and can be used in medicine but it is
necessary to check if they are biocompatible. It means that when they are introduced to a human’s
body they should not cause severe immune reactions.

2.5.3 What can PHA plastic be used for

i) Medical applications:

● Cardiovascular tissue engineering – PHAs can be used instead of synthetic materials. Bioplastics
can be used to repair or replace damaged, diseased, or malfunctioned blood vessels. Scaffolds in
tissue engineering can also be made out of PHAs. They get covered with cells and can be implanted
for a few months. No medical problems or inflammatory responses were observed. Heart valves can
also be produced using PHAa.

IV-Semester, Biology for Engineers (BBOK407) Page15 | 46

 _________________________________________________________________________________
● Bone marrow scaffolds. They can be used for patients with bone loss. Biodegradable scaffolds can
be covered with bone marrow cells. With time the biodegradable scaffold will disintegrate and bone
marrow cells will stay in the suitable place.

● Cartilage repair – bioplastic can be used in cartilage tissue engineering to regenerate cartilage.

● Biodegradable plastic can also be used in eye disorders to create scaffolds used in eyelid
reconstruction.

● PHAs can be used as scaffolds for nerve regeneration.

● Wound management, skin regeneration – wound dressing or scaffolds. PHAs are also a good
material to be used in reconstructive medicine to treat injured skin. Special scaffolds can be created
that are comparable to those of human skin. Special cells can be seeded on these scaffolds. They
can be used as a matrix material for skin tissue engineering. Such scaffolds can be used in difficult
contours of the body. Also wounds covered with specially prepared film can heal more quickly. The
membrane can also reduce inflammation.

● From the 1990s PHAs were studied in drug delivery systems. Therapeutics can be delivered for
prolonged release. As a natural polymer they are biodegradable and biocompatible.

● New tissue formation or regeneration.

● Development of artificial esophagus.

● Biodegradable plastics can be used as absorbable fibers, surgical meshes, repair patches, suture
material, suture fasteners, screws, bone plates, bone filling augmentation material and many more.

● PHAs are also great to be used in pediatric applications because when they are applied for children
they do not hinder growth.

● They can also be used for blood vessels repair, heart valve scaffold.

● In cancer therapy and controlled drug delivery.

● Orthopedic applications of PHAa include bone accumulation or maintenance of osteoblast

phenotype.

● Cartilage engineering

ii) Non-medical applications

IV-Semester, Biology for Engineers (BBOK407) Page16 | 46

 _________________________________________________________________________________
● Packagings that can be degraded into carbon dioxide and water by microorganisms. From PHA
bottles, bags and films can be produced. Already in the 1980s Biopol started experimenting with
packagings made of PHA. First packagings were shampoo bottles, parts of sanitary products for
women and diapers that created moisture barriers, shopping bags, containers, cups, medical surgical
garments, upholstery, carpets.

● Fiber material which possibly could be used in textile industry

● Biofuels which can be produced low cost

● PHB can be used as paper finishing to coat paper as they are water insoluble, can create oxygen
barrier and are UV resistant. They also have excellent film-forming properties. Paper covered with
PHB becomes more water resistant.

● Agriculture applications of PHA as a carrier for targeted and controlled delivery of pesticides to
soil. PHA becomes later degraded in the soil by microbes. Thanks to this method herbicides do not
impact so much non-targeted species and also reduce the need for repeated applications. PHAs can
help with controlling bacterial pathogens. Addition of PHB in the feed of prawns reduced the
amount of bacteria and therefore the survival rate of the prawn larvae is higher and their
development is better.

● Silver nanoparticles which are known for their antibacterial properties can be stabilised by addition
of PHAs. Without it they are not stable and therefore their use is limited.

2.6 cellulose-based water filters

Filtration is a common way to obtain pure drinking water by removing particles and microorganisms
based on size exclusion. Cellulose-based filters are affordable and biobased option for the removal
of particles but bacteria are usually too small to be removed by size exclusion alone. In this article,
the surfaces of cellulose fibres in two types of commercial paper filters have been given a positive
net charge to trap bacteria through electrostatic interactions without releasing any biocides. The
fibres were modified with the cationic polyelectrolyte polyvinylamine polymer in single layers (1
L) or in multilayers together with the anionic polyelectrolyte polyacrylic acid (3 L or 5 L) using a
water-based process at room temperature. Filtration tests show that all filters, using both types of
filter papers and a number of layers, can physically remove more than 99.9% of E. coli from water
and that the 3 L modified filters can remove more than 97% of cultivatable bacteria from natural

IV-Semester, Biology for Engineers (BBOK407) Page17 | 46

 _________________________________________________________________________________
water samples. The bacterial reduction increased with increasing number of filter sheets used for
the filtration and the majority of the bacteria were trapped in the top sheets of the filter. The results
show the potential for creating water purification filters from bio-based everyday consumable
products with a simple modification process. The filters could be used in the future for point-of-use
water purification that may be able to save lives without releasing bactericides. (Fig. 2.6)

Fig. 2.6 Filtration

2.6.1 Methods

A. Nitrogen analysis

A nitrogen analysis was performed using an ANTEK MultiTek analyzer (PAC, Houston, TX, USA)
to quantify the amount of PVAm adsorbed onto the paper filters. Approximately 5 mg of the material
was analysed per measurement and an average of three measurements per sample was calculated.

B. Flow rate for free flow filtration

The flow rate for free flow filtration through the paper filters due to gravity was measured by
filtering dH2O through different numbers of sheets of the reference and 3 L LbL modified filters,
assembled in syringe filter holders. The time taken to filter 10 mL of water was measured and the
flow rate was calculated as mL min−1. The reported value is the average flow rate of three
measurements.

IV-Semester, Biology for Engineers (BBOK407) Page18 | 46

 _________________________________________________________________________________
2.7 Proteins
Proteins are another class of indispensable biomolecules, which make up around 50per cent of the
cellular dry weight. Proteins are polymers of amino acids arranged in the form of polypeptide
chains. The structure of proteins is classified as primary, secondary, tertiary and quaternary in some
cases. These structures are based on the level of complexity of the folding of a polypeptide chain.
Proteins play both structural and dynamic roles. Myosin is the protein that allows movement by
contraction of muscles. Most enzymes are proteinaceous in nature.

2.7.1 Protein Structure

Fig. 27 Protein Structure

In general, they are two types of protein molecules fibrous proteins and globular proteins. Fibrous
proteins are insoluble and elongated. Globular proteins are soluble and compact. Fibrous and
Globular proteins may comprise one or four types of protein structures and they include primary,
secondary, tertiary and quaternary structure. (Fig. 2.7)

Primary Structure: It is a specific sequence of amino acids. The order of amino acids bonded
together is detected by information stored in genes.

Secondary Structure: It is a three-dimensional form of a local segment of proteins. They are

formed by hydrogen bonds between the atoms along the backbone of the polypeptide chain.

Tertiary Structure: It is determined by R-groups. It is a three-dimensional shape of a protein. Many

numbers of tertiary structure fold to form Quaternary Structure.

IV-Semester, Biology for Engineers (BBOK407) Page19 | 46

 _________________________________________________________________________________
Quaternary Structure: It is the arrangement of multiple folded protein subunits in a multi-subunit
complex.

2.7.2 Types of Proteins and Their Functions

Although there are debates about the intake of carbohydrates and fats in order to maintain a proper
health, a minimum amount of daily protein intake is always a doctor’s first recommendation. The
common examples of proteins in biology are eggs, almond, chicken, oats, fish and seafood, soy,
beans and pulses, cottage cheese, Greek yogurt, milk, broccoli, and quinoa.

Functions of Proteins

1. Enzymes: Enzymes mostly carry out all numerous chemical reactions which take place within a
cell. They also help in regenerating and creating DNA molecules and carry out complex processes.

2. Hormones: Proteins are involved in the creation of various types of hormones which help in
balancing the components of the body. For example hormones like insulin, which helps in regulating
blood sugar and secretin. It is also involved in the digestion process and formation of digestive
juices.

3. Antibody: Antibody also known as an immunoglobulin. It is a type of protein which is majorly

used by the immune system to repair and heal the body from foreign bacteria. They often work
together with other immune cells to identify and separate the antigens from increasing until the
white blood cells destroy them completely.

4. Energy: Proteins are the major source of energy that helps in the movements of our body. It is
important to have the right amount of protein in order to convert it into energy. Protein, when
consumed in excess amounts, gets used to create fat and becomes part of the fat cells.

Table 2.2 Functions of Proteins.

Aspect Functions of Proteins in Human Body Examples

Storage Legume Storage, albumin, and Supplies food during the early
proteins. stage of the seedling or embryo.

IV-Semester, Biology for Engineers (BBOK407) Page20 | 46

 _________________________________________________________________________________
Hormone Counterpart activities of different Glucagon and Insulin.
Signalling body parts.

Transport It transport substances throughout Hemoglobin.

the body through lump or blood cells.

Contraction To carry out muscle contraction. Myosin.

Digestive Enzyme Breaks down nutrients present in the Pepsin, Amylase, and Lipase
food into smaller portions so that it
can be easily absorbed

2.7.2 Introduction to Whey Proteins

Whey proteins are easily and quickly digested. Whey protein is one of the 2 proteins of cow’s milk.
Whey proteins refer to the individual protein which is separated out from the casein while
cheesemaking. These proteins are purified into different concentrations based on the end
composition desired. The content of the whey protein may vary in carbohydrates, fat,
immunoglobulins, lactose and minerals. Whey proteins are loaded with EAAs (Essential Amino
Acids) including three BCAAs (Branched Chain Amino Acids) and also they contain
subcomponents of micro fractions which provide the benefits of elemental nitrogen and amino acids.
Whey protein is the one which is most useful for sports nutrition. In addition to these, whey products
are evident in salad dressings, infant formulas, emulsifiers, baked goods and medical nutritional
formulas

.VARIETIES OF WHEY PROTEIN There are three main types of whey protein which is obtained
from various processing techniques that is used to separate whey protein.

They are
• Whey powder,
• Whey concentrate and
• Whey isolate.
2.7.3 Benefits of Whey Protein
Whey protein is considered as an excellent protein for the choice of individuals of all ages for
healthy diet and also to improve and maintain their health. Traditionally, Whey protein was only

IV-Semester, Biology for Engineers (BBOK407) Page21 | 46

 _________________________________________________________________________________
used by most of the athletes and bodybuilders to promote the muscle growth . But from past few
years, whey protein is being used in some other applications. Some applications that using whey
proteins are: cancer treatment, wound healing, infant health and weight loss.

Benefits of Whey protein may include:

● Whey protein helps to increase the serotonin activity and helps to promote restful sleep ;
● Whey protein helps enhance energy levels; it helps to decrease the stress.
● It helps to keep the metabolic rate high.
● It helps to reduce body fat and build the lean body mass.
● It helps to improve the memory loss under stress.

In addition to these, some of the top benefits of whey protein may include:

it provides immunity support, increase muscle mass, boost metabolism, and helps to improve overall
health

Whey proteins promote:

• Muscle strength
• Improved immune system
• Muscle synthesis
• Performance / endurance
• More favorable body composition
• Recovery

2.7.4 Whey Protein Applications

Whey proteins are used in various industries for the supplement of food and beverages. Whey
proteins are used for medicine purposes and to improve the overall heath.

i) CANCER

Cancer patients are undergoing chemotherapy or radiation may have difficulty in meeting their
nutritional requirements and this is because of lack of appetite. So, this may lead to muscle loss,
weight loss and protein calorie malnutrition. Here, the use of whey protein provides excellent protein
choice for the cancer patients . In addition to these, it helps them very easy to digest.

IV-Semester, Biology for Engineers (BBOK407) Page22 | 46

 _________________________________________________________________________________
ii) DIABETES

Today, most of the people are affected by Type 2 diabetes and it is one of the growing health
problems over the world. It becomes a concern for teenagers and children. Healthy nutrition
practices may play a role in managing and helping the type-2 diabetes. Here, whey protein is the
high biological, a high quality and value protein which is good choice for the people who has
diabetics. Whey protein helps to control the blood glucose levels and also provides additional
beneficial for weight management which is a concern for type-2 diabetics .

iii) CARDIOVASCULAR HEALTH:

Heart disease is considered as one of the most leading disease which causes death for both men and
women. It is essential to maintain health and nutrition diet and also regular exercise to maintain the
healthy cardiovascular system . In this way, whey protein is a part of that nutritious diet, which
keeps a person healthy. High blood pressure (Hypertension) is one of the leading heart diseases and
it may cause stroke. Whey protein helps to fight against the hypertension. Elevated cholesterol is
one of the factors that is associated with the heart disease. Here, whey protein helps to reduce
cholesterol.

2.7.5 Meat analog

The definition of meat analog refers to the replacement of the main ingredient with other than meat.
It also called a meat substitute, meat alternatives, fake or mock meat, and imitation meat. The
increased importance of meat analog in the current trend is due to the health awareness among
consumers in their diet and for a better future environment. The factors that lead to this shift is due
to low fat and calorie foods intake, flexitarians, animal disease, natural resources depletion, and to
reduce greenhouse gas emission. Currently, available marketed meat analog products are plant-
based meat in which the quality (i.e., texture and taste) are similar to the conventional meat.

The ingredients used are mainly soy proteins with novel ingredients added, such as mycoprotein
and soy leghemoglobin. However, plant-based meat is sold primarily in Western countries. Asian
countries also will become a potential market in the near future due to growing interest in this
product. With the current advance technology, lab-grown meat with no livestock raising or known
as cultured meat will be expected to boost the food market in the future.

IV-Semester, Biology for Engineers (BBOK407) Page23 | 46

 _________________________________________________________________________________
Also, insect-based products will be promising to be the next protein resource for human food.
Nevertheless, other than acceptability, cost-effective, reliable production, and consistent quality
towards those products, product safety is the top priority. Therefore, the regulatory frameworks need
to be developed alongside.

Fig. 2.8 Protein Meat analog

2.7.6 What Plants Are High in Protein?

Plant protein is simply a meaningful food source of protein which is from plants. This group can
include pulses, tofu, soya, tempeh, seitan, nuts, seeds, certain grains and even peas. Pulses are a
large group of plants, which include chickpeas, lentils, beans (such as black, kidney and adzuki
beans) and split peas. Plant proteins are highly nutritious – not only as good sources of protein, but
also because they provide other nutrients such as fibre, vitamins and minerals. Our intake of fibre
tends to be too low, however by incorporating certain plant proteins into your diet, such as pulses,
peas and nuts, you can easily boost your fibre intake. Did you know that our peas, soya beans and
green beans are all a great source of plant fibre?

2.7.7 Why Protein Is Important?

Protein is a vital nutrient responsible for the growth, maintenance and repair of our bodies. So, we
must ensure we eat enough high-quality protein every day to keep our bodies healthy.
Essentially, protein is fundamental to the basic structure of our body. There are 9 essential amino
acids, and when you eat a protein source containing all of these it is called a ‘complete’ protein.

IV-Semester, Biology for Engineers (BBOK407) Page24 | 46

 _________________________________________________________________________________
Animal protein sources are complete, and they include fish, poultry such as chicken and red
meat. Plant sources of protein, with the exception of soya and quinoa, are ‘incomplete’. This is
because plant protein sources tend to lack at least 1 of the 9 essential amino acids. So how can you
ensure that you consume all of the essential amino acids when eating plant proteins? The answer is
protein combining.

2.7.8 What Is Protein Combining?

Put simply, protein combining means eating a selection of incomplete plant protein sources, to
ensure you consume all of the essential amino acids. As a general rule of thumb, pulses and grains
lack different essential amino acids. So, eating a pulse and a grain provides an overall complete
protein source. With this in mind, it’s easy to get all the essential amino acids your body needs. For
example, a serving of rice and peas or bread and hummus would give you a complete protein source.
And remember, you needn’t eat your combined proteins in just one meal – they can be eaten at
different points during the day or even the week!

2.7.9 How to Adopt a Plant-Based Diet?

The plant-based diet is rather simple and easy to get your head around as it’s centred around foods
derived from plant sources. Plant-based diets cheer on the eating of fruits, vegetables, wholegrains,
legumes, seeds and nuts, meaning these foods comprise the majority of what you eat. To give you
a helping hand, our frozen vegetables are a simple yet delicious place to start if you’re looking to
slowly add more plants into your lifestyle, without making the full move.

At first you may think this is a classic vegan or vegetarian diet. It’s not a plant-based diet only, it is
far more flexible and doesn’t boycott dairy, meat, seafood and eggs altogether. Its easy-going and
inclusive approach make this diet an attractive one – nobody likes rules, after all! And what’s more,
flexitarian diets promote consuming a wide variety of plant foods, so there are of course numerous
nutritional benefits to adopting this way of eating.

As a nation, we currently struggle to keep up with this figure, however with a plant-based diet
heavily relying on fruit and vegetables, you’re likely to find it easier to consume the recommended
amount. Likewise, as beans and pulses are greatly encouraged, you’re expected to have an increased
intake of fibre, vitamins and minerals – ideal as most of us are also not consuming enough fibre! To

IV-Semester, Biology for Engineers (BBOK407) Page25 | 46

 _________________________________________________________________________________
give you a snapshot of how humble vegetables house an array of nutritional benefits, peas provide
protein, fibre, folic acid and vitamin C. It’s natural to think that a plant-based diet can lead to a lack
of protein, but this is far from the truth – plants provide protein
If you’re trying to move towards more of a plant-based diet, now is a great time to get creative and
experiment with new flavours and combinations that you’ve never tried before! Our Meat-Free
Burgers, Sausages and Meat-free Meatballs are packed with protein and provide fibre, and each
have their own tasty combo of herbs and spices.

Fig. 2.9 Plant based Protein

IV-Semester, Biology for Engineers (BBOK407) Page26 | 46

 _________________________________________________________________________________

2.8 Nucleic Acids

Nucleic acids refer to the genetic material found in the cell that carries all the hereditary information
from parents to progeny. There are two types of nucleic acids namely, deoxyribonucleic acid (DNA)
and ribonucleic acid (RNA). The main function of nucleic acid is the transfer of genetic information
and synthesis of proteins by processes known as translation and transcription. The monomeric unit
of nucleic acids is known as nucleotide and is composed of a nitrogenous base, pentose sugar, and
phosphate. The nucleotides are linked by a 3’ and 5’ phosphodiester bond. The nitrogen base
attached to the pentose sugar makes the nucleotide distinct. There are 4 major nitrogenous bases
found in DNA: adenine, guanine, cytosine, and thymine. In RNA, thymine is replaced by uracil.
The DNA structure is described as a double-helix or double-helical structure which is formed by
hydrogen bonding between the bases of two antiparallel polynucleotide chains. Overall, the DNA
structure looks similar to a twisted ladder.

Fig. 2.10 Plant based Protein

IV-Semester, Biology for Engineers (BBOK407) Page27 | 46

_________________________________________________________________________________

Table 1.3 DNA and RNA Difference

DNA (Deoxyribonucleic acid) RNA (Ribonucleic acid)

Definition

It is a long polymer. It has a deoxyribose and Is a polymer with a ribose and phosphate
phosphate backbone having four distinct bases: backbone with four varying bases: uracil,
thymine, adenine, cytosine and guanine. cytosine, adenine and guanine.

Location

It is located in the nucleus of a cell and in the It is found in the cytoplasm, nucleus and in the
mitochondria. ribosome.

Sugar portion

It has 2-deoxyribose. It has Ribose.

Function

The function of DNA is the transmission of RNA is critical for the transmission of the
genetic information. It acts as a medium for long- genetic code that is necessary for protein
term storage. creation from the nucleus to the ribosome.

Predominant Structure

DNA is a double-stranded molecule that has a RNA is a single-stranded molecule which has
long chain of nucleotides. a shorter chain of nucleotides.

Propagation

RNA does not replicate on its own. It is

DNA replicates on its own, it is self-replicating.
synthesized from DNA when required.

Nitrogenous Bases and Pairing

IV-Semester, Biology for Engineers (BBOK407) Page28 | 46

 _________________________________________________________________________________
The base pairing is as follows: GC (Guanine pairs The base pairing is as follows: GC (Guanine
with Cytosine) A-T (Adenine pairs with pairs with Cytosine) A-U (Adenine pairs with
Thymine). Uracil).

2.8.1 DNA
● In cells, DNA (Deoxyribonucleic acid) is the nucleic acid that functions as the original blueprint
for the synthesis of proteins. DNA contains the sugar deoxyribose, phosphates and a unique
sequence of the nitrogenous bases adenine (A), guanine (G), cytosine (C) and thymine (T).

Brief Insight into the Structure and Composition of DNA

● The DNA molecules contain instructions a living entity requires to grow, develop and reproduce.
These instructions are present inside each cell and are inherited from the parents to their
offspring.

● It is made up of nucleotides which contain a nitrogenous group, a phosphate group, and a sugar
group. The order of the nitrogenous bases – thymine(T), guanine(G), cytosine(C), and
adenine(A), is crucial in determining the genetic code.

● Genes are formed by the order of the nitrogenous bases present in the DNA which is crucial for
protein synthesis. RNA is another nucleic acid that translates genetic information into proteins
from DNA.

● The nucleotides are linked together for the formation of two long strands which spiral to produce
a structure known as the double-helix which resembles that of a ladder wherein the sugar and
phosphate molecules form the sides while the rungs are formed by the bases.

● The bases located on one strand pair up with the bases on the other strand, as in – guanine pairs
with cytosine and adenine pairs with thymine.

● The DNA molecules are extremely long and hence without the right packaging, they cannot fit
into cells. Thus, DNA is tightly coiled to produce formations referred to as chromosomes. Every
chromosome has a single DNA molecule. In humans, there are 23 pairs of chromosomes that
are present within the nucleus of the cells.

IV-Semester, Biology for Engineers (BBOK407) Page29 | 46

 _________________________________________________________________________________
2.8.2 Types of DNA

● A-DNA: It is found at a relative humidity of 75%. In an environment where there is a higher

salt concentration or ionic concentrations, such as K+, Na+, Cs+ or in a state of dehydration it
endures in a form that contains 11 nucleotide pairs with a rise of 2.56Å vertically per base pair.
It has the broadest helical diameter amongst all DNA forms – 23Å DNA which is a typical helix
that is right-handed with a rotation of 32.70 per base pair.
● B-DNA: The most common form, present in most DNA at neutral pH and physiological salt
concentrations, is B-form. It has 10 base pairs per turn from the helix axis. There is a distance
of 3.4Å with a helical diameter of 20Å. Watson-Crick’s double helix model is defined as a B-
form of DNA.
● C-DNA: It is observed at a relative humidity of 66% and in the occupancy of a few ions such
as Lithium(Li+). It closely has 9.33 base pairs for every turn. The diameter of the helix is
about 19Å and the vertical rise for every base pair for the right-handed helix is 3.320.
● D-DNA: It is observed rarely as an extreme variant. The 8 base pairs are titled negatively from
the helix axis with an axial rise of about 3.03Å
● Z-DNA: It is found in an environment with a very high salt concentration. Unlike the A, B, and
C types of DNA, it is a left-handed helical structure. The backbone is arranged in a zig-zag
pattern formed by the sugar-phosphate linkage wherein the recurrent monomer is the
dinucleotide in contrast to the mononucleotide, which is observed in alternate forms.

2.8.3 RNA

Ribonucleic acid (RNA) is a nucleic acid which is directly involved in protein synthesis.
Ribonucleic acid is an important nucleotide with long chains of nucleic acid present in all living
cells. Its main role is to act as a messenger conveying instructions from DNA for controlling protein
synthesis.

RNA contains the sugar ribose, phosphates, and the nitrogenous bases adenine (A), guanine
(G), cytosine (C), and uracil (U). DNA and RNA share the nitrogenous bases A, G, and C. Thymine
is usually only present in DNA and uracil is usually only present in RNA.

IV-Semester, Biology for Engineers (BBOK407) Page30 | 46

 _________________________________________________________________________________
2.8.4 Types of RNA

Only some of the genes in cells are expressed into RNA. The following are the types of RNA
wherein each type is encoded by its own type of gene:

● tRNA– The transfer RNA or the tRNA carries amino acids to ribosomes while translation
● mRNA – The messenger RNA or the mRNA encodes amino acid sequences of a
polypeptide
● rRNA – The ribosomal RNA or the rRNA produces ribosomes with the ribosomal proteins
that are organelles responsible for the translation of the mRNA.
● snRNA – The small nuclear RNA forms the complexes along with proteins which are
utilized in RNA processing in the eukaryotes.

● With an estimated global mortality of about 50,000 per year, rabies has been identified as
one of the major causes of human death from infectious diseases. According to estimates,
one person dies due to rabies every 15 minute, and 300 people are exposed to the risk,
during the same period. More than 99% rabies deaths occur in the developing countries of
Asia and Africa. The disease manifests itself as a progressive fatal encephalomyelitis, and
results from infection with viruses of the genus Lyssavirus in the family Rhabdoviridae.
Infection is usually acquired from transcutaneous or mucosal exposure to virus-laden saliva
of a rabid animal. All warm blooded animals are susceptible, though companion animals,
especially dogs, constitute the major vector in most developing countries.

● Limited access to healthcare facilities and the high costs and complex schedules of rabies
biologics often hamper human rabies prophylaxis in the developing countries. The cell
culture vaccines, though 100% effective when combined with appropriate wound care and
use of immunoglobulins, are expensive, require multiple doses over at least 3 weeks, and
demand cold chain maintenance. Canine rabies control is critical in prevention of human
rabies in the endemic countries; but faces greater challeges—logistics of mass vaccination
drivesever-expanding population of unowned dogs, difficulties in locating the dogs for
repeat doses, disrespect of vaccine cold chain, poor immune responses in malnourished
and sick animals etc. A cheaper, easily producible vaccine that requires single or a few
doses, and reasonably stable at room temperature would be highly desirable in endemic

IV-Semester, Biology for Engineers (BBOK407) Page31 | 46

 _________________________________________________________________________________
countries, at least for veterinary vaccination. In this context, a DNA vaccine could be a
suitable option.

2.8.5 DNA vaccines

DNA vaccines are bacterial plasmids constructed to express an encoded protein following in vivo
administration and subsequent transfection of cells. Since, DNA vaccines have shown promising
results in a number of trials for prophylaxis of bacterial, viral, parasitic, autoimmune and neoplastic
diseases. DNA vaccines have made significant strides in veterinary practice, wherein four DNA
vaccines have been licensed recently, including those against West Nile virus infection in horses
(licensed in USA), Infectious Hematopoietic Necrosis Virus in Salmon (licensed in Canada),
melanoma cancer of dogs (conditionally licensed in USA) and Growth Hormone Releasing Factor
therapy for pigs(licensed in Australia).

Several facts explain the interest in a DNA-based rabies vaccine approach:

● Protection from rabies is commensurate with the presence of adequate amounts of virus
neutralizing antibodies, principally targeted against the rabies virus glycoprotein. The tools
of recombinant DNA technology allow facile cloning of the glycoprotein gene into suitable
expression vectors which mediate efficient in vivo expression of glycoprotein.

● Nanogram amounts of a plasmid-encoded protein in transfected cells can generate high-

affinity antibodies. In situ production of the protein within transfected cells facilitates
native post-translational modifications and obviates the issues associated with protein
purification in vitro.

● DNA vaccines provide unique approaches for expanding the spectrum of immune
responses, such as by employing multiple or modified antigens and targeted delivery to
specific cell types or locations.

● Remarkable thermal stability of plasmids (over 50˚C) may be of advantage in tropical

climates.

● Generic nature of the production and purification processes of plasmid vaccines reduces
cost and facilitates easier product development, compared to conventional vaccines.

IV-Semester, Biology for Engineers (BBOK407) Page32 | 46

 _________________________________________________________________________________

2.8.6 RNA or mRNA VACCINE

Number of doses required: 2 doses, intramuscular

What to know: Since no other existing licensed or approved vaccine uses this type of technology,
the Messenger RNA (mRNA) variety could be mistaken for something completely new to
healthcare. However, a number of mRNA vaccines have been studied in the past for illnesses and
diseases including cytomegalovirus (CMV), influenza, rabies, and the Zika virus.

According to the Centers for Disease Control and Prevention (CDC): “Researchers have been
studying and working with mRNA vaccines for decades. Interest has grown in these vaccines
because they can be developed in a laboratory using readily available materials. This means the
process can be standardised and scaled up, making vaccine development faster than traditional
methods of making vaccines.”

So how does it reportedly work? The COVID-19 RNA vaccine consists of mRNA molecules made
in a lab that code for parts of the SARS-CoV-2 virus – specifically the virus’ spike protein.

Once injected into the body, the mRNA instructs the cells to produce antigens – such as the spike
protein mentioned – which are then detected by immune cells, triggering a response by the body’s
lymphocytes.

The killer T-cells destroy the infected cells, while the B-cells and helper T-cells support antibody
production. Whoever is exposed to the COVID-19 coronavirus in the future would have an immune
system that recognises it, and in turn fight off the infection.

Benefits: According to the University of Cambridge’s PHG Foundation, advantages include good
safety (since there are no live components, there’s no risk of the vaccine triggering disease),
reliability, and that it’s relatively simple to manufacture.

Challenges: Disadvantages include unintended effects (such as an unintended immune reaction),

ensuring effective delivery into the body (since free RNA in the body is quickly broken down),
storage issues, plus the fact that this type of vaccine has never previously been licensed for humans.

IV-Semester, Biology for Engineers (BBOK407) Page33 | 46

 _________________________________________________________________________________

2.8.7 DNA fingerprinting

DNA fingerprinting, also called DNA typing, DNA profiling, genotyping, or identity testing,
in genetics, method of isolating and identifying variable elements within the base-pair sequence
of DNA (deoxyribonucleic acid). The technique was developed in 1984 by British geneticist Alec
Jeffreys, after he noticed that certain sequences of highly variable DNA (known as minisatellites),
which do not contribute to the functions of genes, are repeated within genes. Jeffreys recognized
that each individual has a unique pattern of minisatellites (the only exceptions being multiple
individuals from a single zygote, such as identical twins). The procedure for creating a
DNA fingerprint consists of first obtaining a sample of cells, such as skin, hair, or blood cells, which
contain DNA. The DNA is extracted from the cells and purified. In Jeffreys’s original approach,
which was based on restriction fragment length polymorphism (RFLP) technology, the DNA was
then cut at specific points along the strand with proteins known as restriction enzymes. The enzymes
produced fragments of varying lengths that were sorted by placing them on a gel and then subjecting
the gel to an electric current (electrophoresis): the shorter the fragment, the more quickly it moved
toward the positive pole (anode). The sorted double-stranded DNA fragments were then subjected
to a blotting technique in which they were split into single strands and transferred to a nylon sheet.
The fragments underwent autoradiography in which they were exposed to DNA probes—pieces
of synthetic DNA that were made radioactive and that bound to the minisatellites. A piece of X-
ray film was then exposed to the fragments, and a dark mark was produced at any point where a
radioactive probe had become attached. The resultant pattern of marks could then be analyzed.

IV-Semester, Biology for Engineers (BBOK407) Page34 | 46

 _________________________________________________________________________________

2.9 Lipids
Lipids are organic substances that are insoluble in water, soluble in organic solvents, are related to
fatty acids and are utilized by the living cell. They include fats, waxes, sterols, fat-soluble vitamins,
mono-, di- or triglycerides, phospholipids, etc. Unlike carbohydrates, proteins, and nucleic acids,
lipids are not polymeric molecules. Lipids play a great role in the cellular structure and are the chief
source of energy.

“Lipids are organic compounds that contain hydrogen, carbon, and oxygen atoms, which form
the framework for the structure and function of living cells.”

What are Lipids?

These organic compounds are nonpolar molecules, which are soluble only in nonpolar solvents and
insoluble in water because water is a polar molecule. In the human body, these molecules can
be synthesized in the liver and are found in oil, butter, whole milk, cheese, fried foods and also in
some red meats. (Fig.2.11)

Fig. 2.11 Lipids

2.9.1 Properties of Lipids

Lipids are a family of organic compounds, composed of fats and oils. These molecules yield high
energy and are responsible for different functions within the human body. Listed below are some
important characteristics of Lipids.

● Lipids are oily or greasy nonpolar molecules, stored in the adipose tissue of the body.

IV-Semester, Biology for Engineers (BBOK407) Page35 | 46

 _________________________________________________________________________________
● Lipids are a heterogeneous group of compounds, mainly composed of hydrocarbon chains.
● Lipids are energy-rich organic molecules, which provide energy for different life
processes.
● Lipids are a class of compounds characterised by their solubility in nonpolar solvents and
insolubility in water.
● Lipids are significant in biological systems as they form a mechanical barrier dividing a
cell from the external environment known as the cell membrane.

2.9.2 Lipid Structure

Lipids are the polymers of fatty acids that contain a long, non-polar hydrocarbon chain with a small
polar region containing oxygen. The lipid structure is explained in the diagram below:

Fig. 1.12 Lipid Structure – Saturated and Unsaturated Fatty Acids

2.9.3 Classification of Lipids

Lipids can be classified into two main classes:

● Nonsaponifiable lipids
● Saponifiable lipids

A. Nonsaponifiable Lipids

A nonsaponifiable lipid cannot be disintegrated into smaller molecules through hydrolysis.

Nonsaponifiable lipids include cholesterol, prostaglandins, etc

B. Saponifiable Lipids

IV-Semester, Biology for Engineers (BBOK407) Page36 | 46

 _________________________________________________________________________________
A saponifiable lipid comprises one or more ester groups, enabling it to undergo hydrolysis in the
presence of a base, acid, or enzymes, including waxes, triglycerides, sphingolipids and
phospholipids.

Further, these categories can be divided into non-polar and polar lipids.

Nonpolar lipids, namely triglycerides, are utilized as fuel and to store energy.

Polar lipids, that could form a barrier with an external water environment, are utilized in membranes.
Polar lipids comprise sphingolipids and glycerophospholipids.

Fatty acids are pivotal components of all these lipids.

1.16.4 Types of Lipids

Within these two major classes of lipids, there are numerous specific types of lipids, which are
important to life, including fatty acids, triglycerides, glycerophospholipids, sphingolipids and
steroids. These are broadly classified as simple lipids and complex lipids.

[Link] Lipids

Esters of fatty acids with various alcohols.

● Fats: Esters of fatty acids with glycerol. Oils are fats in the liquid state

● Waxes: Esters of fatty acids with higher molecular weight monohydric alcohols

[Link] Lipids

Esters of fatty acids containing groups in addition to alcohol and fatty acid.

● Phospholipids: These are lipids containing, in addition to fatty acids and alcohol,
phosphate group. They frequently have nitrogen-containing bases and other substituents,
eg, in glycerophospholipids the alcohol is glycerol and in sphingophospholipids the alcohol
is sphingosine.

● Glycolipids (glycosphingolipids): Lipids containing a fatty acid, sphingosine and

carbohydrate.

● Other complex lipids: Lipids such as sulfolipids and amino lipids. Lipoproteins may also
be placed in this category.

IV-Semester, Biology for Engineers (BBOK407) Page37 | 46

 _________________________________________________________________________________
C. Precursor and Derived Lipids

These include fatty acids, glycerol, steroids, other alcohols, fatty aldehydes, and ketone bodies,
hydrocarbons, lipid-soluble vitamins, and hormones. Because they are uncharged, acylglycerols
(glycerides), cholesterol, and cholesteryl esters are termed neutral lipids.

These compounds are produced by the hydrolysis of simple and complex lipids.

2.10 Biodiesel
● Biodiesel is a liquid biofuel obtained by chemical processes from vegetable oils or animal
fats and an alcohol that can be used in diesel engines, alone or blended with diesel oil.
● ASTM (American Society for Testing and Materials) defines biodiesel as a mixture of
long-chain monoalkylic esters from fatty acids obtained from renewable resources, to be
used in diesel engines.
● Blends with diesel fuel are indicated as ‘‘Bx’’, where ‘‘x’’ is the percentage of biodiesel
in the blend.
● For instance, ‘‘B5’’ indicates a blend with 5% biodiesel and 95% diesel fuel; in
consequence, B100 indicates pure biodiesel.
● Biodiesel is an alternative energy source and could be a substitute for petroleum-based
diesel fuel.
● The biggest challenge modern industrial society is facing today is the decline and
exhaustion of the fossil energy resources.
● The primary sources of energy that power our civilization are those fossil fuels.
● The International Energy Agency has forecasted that the world's total energy requirements
will rise by half in the next 25 years.
● On the other hand, global oil product demand has been revised to 84.3 million barrels a
day (mb/d) in 2006 and 85.8 mb/d in 2007
● Therefore continued use of petroleum-sourced fuels is now widely recognized as
unsustainable because of depleting supplies and increasing demand.
● Oil prices have been rising steadily over the past 3 years and surged to a record high above
$60 a barrel in June 2005, sustaining a rally built on strong demand for gasoline and diesel
and on concerns about refiners' ability to keep up.

IV-Semester, Biology for Engineers (BBOK407) Page38 | 46

 _________________________________________________________________________________
● In addition, the combustion of the fossil fuels used is considered as the major factor
responsible for global warming due to large-scale carbon dioxide emissions.
● One of the most prominent alternative energy resources, attracting more and more interest
in recent years with the price for crude oil reaching record heights, is biodiesel, which is a
possible substitute for petroleum-based diesel fuel.
● Many studies have shown that the properties of biodiesel are very close to diesel fuel.
● Therefore, biodiesel fuel can be used in diesel engines with little or no modification.
● Biodiesel has a higher cetane number than diesel fuel, no aromatics, no sulfur, and contains
10-11% oxygen by weight.
● These characteristics of biodiesel are responsible for a reduction in the emissions of carbon
monoxide (CO), hydrocarbon (HC) and particulate matter (PM) in the exhaust gas
compared to diesel fuel.
● However, to be a viable alternative, a biodiesel should provide a net energy gain, be
economically competitive, and be producible in large quantities without reducing food s

2.10.1 Advantages of the Use of Biodiesel Some of the advantages of using biodiesel as a
replacement for diesel fuel are:

● Renewable fuel, obtained from vegetable oils or animal fats.

● Low toxicity, in comparison with diesel fuel.
● Degrades more rapidly than diesel fuel, minimizing the environmental consequences of
biofuel spills.
● Lower emissions of contaminants: carbon monoxide, particulate matter, polycyclic
aromatic hydrocarbons, aldehydes.
● Lower health risk, due to reduced emissions of carcinogenic substances.
● No sulfur dioxide (SO2) emissions.
● Higher flash point (100C minimum).
● May be blended with diesel fuel at any proportion; both fuels may be mixed during the fuel
supply to vehicles.
● Excellent properties as a lubricant.
● It is the only alternative fuel that can be used in a conventional diesel engine, without
modifications.

IV-Semester, Biology for Engineers (BBOK407) Page39 | 46

 _________________________________________________________________________________
● Used cooking oils and fat residues from meat processing may be used as raw materials.

2.10.2 Disadvantages of the Use of Biodiesel

There are certain disadvantages of using biodiesel as a replacement for diesel fuel that must be
taken into consideration:

● Slightly higher fuel consumption due to the lower calorific value of biodiesel.
● Slightly higher nitrous oxide (NOx) emissions than diesel fuel.
● Higher freezing point than diesel fuel. This may be inconvenient in cold climates.
● It is less stable than diesel fuel, and therefore long-term storage (more than six months) of
biodiesel is not recommended.
● May degrade plastic and natural rubber gaskets and hoses when used in pure form, in which
case replacement with Teflon components is recommended.
● It dissolves the deposits of sediments and other contaminants from diesel fuel in storage
tanks and fuel lines, which then are flushed away by the biofuel into the engine, where they
can cause problems in the valves and injection systems.
● In consequence, the cleaning of tanks prior to filling with biodiesel is recommended.
● It must be noted that these disadvantages are significantly reduced when biodiesel is used
in blends with diesel fuel.

2.11 Soaps and Detergents

Carboxylic acids and salts having alkyl chains longer than eight carbons exhibit unusual behavior
in water due to the presence of both hydrophilic (CO2) and hydrophobic (alkyl) regions in the same
molecule. Such molecules are termed amphiphilic (Gk. amphi = both) or amphipathic. Fatty acids
made up of ten or more carbon atoms are nearly insoluble in water, and because of their lower
density, float on the surface when mixed with water. Unlike paraffin or other alkanes, which tend
to puddle on the waters surface, these fatty acids spread evenly over an extended water surface,
eventually forming a monomolecular layer in which the polar carboxyl groups are hydrogen bonded
at the water interface, and the hydrocarbon chains are aligned together away from the water. This
behavior is illustrated in the diagram on the right. Substances that accumulate at water surfaces and
change the surface properties are called surfactants.

IV-Semester, Biology for Engineers (BBOK407) Page40 | 46

 _________________________________________________________________________________

Fig. 2.13 Hydrocarbon chains

Alkali metal salts of fatty acids are more soluble in water than the acids themselves, and the
amphiphilic character of these substances also make them strong surfactants. The most common
examples of such compounds are soaps and detergents, four of which are shown below. Note that
each of these molecules has a nonpolar hydrocarbon chain, the "tail", and a polar (often ionic) "head
group". The use of such compounds as cleaning agents is facilitated by their surfactant character,
which lowers the surface tension of water, allowing it to penetrate and wet a variety of materials.

Fig.2.14 Head group

Very small amounts of these surfactants dissolve in water to give a random dispersion of solute
molecules. However, when the concentration is increased an interesting change occurs. The
surfactant molecules reversibly assemble into polymolecular aggregates called micelles. By

IV-Semester, Biology for Engineers (BBOK407) Page41 | 46

 _________________________________________________________________________________
gathering the hydrophobic chains together in the center of the micelle, disruption of the hydrogen
bonded structure of liquid water is minimized, and the polar head groups extend into the surrounding
water where they participate in hydrogen bonding. These micelles are often spherical in shape, but
may also assume cylindrical and branched forms, as illustrated on the right. Here the polar head
group is designated by a blue circle, and the nonpolar tail is a zig-zag black line.

Fig.2.15 Micelle formation

An animated display of micelle formation is presented below. Notice the brownish material in the
center of the three-dimensional drawing on the left. This illustrates a second important factor
contributing to the use of these amphiphiles as cleaning agents. Micelles are able to encapsulate
nonpolar substances such as grease within their hydrophobic center, and thus solubilize it so it is
removed with the wash water. Since the micelles of anionic amphiphiles have a negatively charged
surface, they repel one another and the nonpolar dirt is effectively emulsified. To summarize, the
presence of a soap or a detergent in water facilitates the wetting of all parts of the object to be
cleaned, and removes water-insoluble dirt by incorporation in micelles. If the animation has
stopped, it may be restarted by clicking on it.

Fig.2.16 Amphiphles in water

The oldest amphiphilic cleaning agent known to humans is soap. Soap is manufactured by the base-
catalyzed hydrolysis (saponification) of animal fat (see below). Before sodium hydroxide was
commercially available, a boiling solution of potassium carbonate leached from wood ashes was
used. Soft potassium soaps were then converted to the harder sodium soaps by washing with salt
solution. The importance of soap to human civilization is documented by history, but some problems

IV-Semester, Biology for Engineers (BBOK407) Page42 | 46

 _________________________________________________________________________________
associated with its use have been recognized. One of these is caused by the weak acidity (pKa ca.
4.9) of the fatty acids. Solutions of alkali metal soaps are slightly alkaline (pH 8 to 9) due to
hydrolysis. If the pH of a soap solution is lowered by acidic contaminants, insoluble fatty acids
precipitate and form a scum. A second problem is caused by the presence of calcium and magnesium
salts in the water supply (hard water).

These divalent cations cause aggregation of the micelles, which then deposit as a dirty [Link]
problems have been alleviated by the development of synthetic amphiphiles called detergents (or
syndets). By using a much stronger acid for the polar head group, water solutions of the amphiphile
are less sensitive to pH changes. Also the sulfonate functions used for virtually all anionic detergents
confer greater solubility on micelles incorporating the alkaline earth cations found in hard water.
Variations on the amphiphile theme have led to the development of other classes, such as the cationic
and nonionic detergents shown above. Cationic detergents often exhibit germicidal properties, and
their ability to change surface pH has made them useful as fabric softeners and hair conditioners.
These versatile chemical "tools" have dramatically transformed the household and personal care
cleaning product markets over the past fifty years.

2.12 Enzymes
2.12.1 Enzymes Structure
Enzymes are a linear chain of amino acids, which give rise to a three-dimensional structure. The
sequence of amino acids specifies the structure, which in turn identifies the catalytic activity of the
enzyme. Upon heating, the enzyme’s structure denatures, resulting in a loss of enzyme activity,
which typically is associated with temperature.

Compared to its substrates, enzymes are typically large with varying sizes, ranging from 62 amino
acid residues to an average of 2500 residues found in fatty acid synthase. Only a small section of
the structure is involved in catalysis and is situated next to the binding sites. The catalytic site and
binding site together constitute the enzyme’s active site. A small number of ribozymes exist which
serve as an RNA-based biological catalyst. It reacts in complex with proteins.

IV-Semester, Biology for Engineers (BBOK407) Page43 | 46

 _________________________________________________________________________________
2.12.2 Enzymes Classification

Fig.2.17 Enzymes Classification

Earlier, enzymes were assigned names based on the one who discovered them. With further
research, classification became more comprehensive.

According to the International Union of Biochemists (I U B), enzymes are divided into six functional
classes and are classified based on the type of reaction in which they are used to catalyze. The six
kinds of enzymes are hydrolases, oxidoreductases, lyases, transferases, ligases and isomerases.

Table 2.4 Classification of enzymes

Types Biochemical Property

The enzyme Oxidoreductase catalyzes the oxidation reaction where

Oxidoreductases
the electrons tend to travel from one form of a molecule to the other.

The Transferases enzymes help in the transportation of the functional

Transferases
group among acceptors and donor molecules.

Hydrolases are hydrolytic enzymes, which catalyze the hydrolysis

Hydrolases
reaction by adding water to cleave the bond and hydrolyze it.

Adds water, carbon dioxide or ammonia across double bonds or

Lyases
eliminate these to create double bonds.

The Isomerases enzymes catalyze the structural shifts present in a

Isomerases
molecule, thus causing the change in the shape of the molecule.

IV-Semester, Biology for Engineers (BBOK407) Page44 | 46

 _________________________________________________________________________________
The Ligases enzymes are known to charge the catalysis of a ligation
Ligases
process.

2.12.3 A biosensor
A biosensor can be defined as a “compact analytical device or unit incorporating a biological or
biologically derived sensitive recognition element integrated or associated with a physio-chemical
transducer”. There are three main parts of a biosensor:

(i) the biological recognition elements that differentiate the target molecules in the presence of
various chemicals,

(ii) a transducer that converts the biorecognition event into a measurable signal, and

(iii) a signal processing system that converts the signal into a readable form.

The molecular recognition elements include receptors, enzymes, antibodies, nucleic acids,
microorganisms and lectins. The five principal transducer classes are electrochemical, optical,
thermometric, piezoelectric, and magnetic. The majority of the current glucose biosensors are of the
electrochemical type, because of their better sensitivity, reproducibility, and easy maintenance as
well as their low cost. Electrochemical sensors may be subdivided into potentiometric,
amperometric, or conductometric types. Enzymatic amperometric glucose biosensors are the most
common devices commercially available and have been widely studied over the last few decades.
Amperometric sensors monitor currents generated when electrons are exchanged either directly or
indirectly between a biological system and an electrode.

Generally, glucose measurements are based on interactions with one of three enzymes: hexokinase,
glucose oxidase (GOx) or glucose-1-dehydrogenase (GDH). The hexokinase assay is the reference
method for measuring glucose using spectrophotometry in many clinical laboratories. Glucose
biosensors for SMBG are usually based on the two enzyme families, GOx and GDH. These enzymes
differ in redox potentials, cofactors, turnover rate and selectivity for glucose. GOx is the standard
enzyme for biosensors; it has a relatively higher selectivity for glucose. GOx is easy to obtain, cheap,
and can withstand greater extremes of pH, ionic strength, and temperature than many other enzymes,
thus allowing less stringent conditions during the manufacturing process and relatively relaxed
storage norms for use by lay biosensor users.

IV-Semester, Biology for Engineers (BBOK407) Page45 | 46

 _________________________________________________________________________________
The basic concept of the glucose biosensor is based on the fact that the immobilized GOx catalyzes
the oxidation of β-D-glucose by molecular oxygen producing gluconic acid and hydrogen peroxide.
In order to work as a catalyst, GOx requires a redox cofactor—flavin adenine dinucleotide (FAD).
FAD works as the initial electron acceptor and is reduced to FADH2.

Glucose + GOx − FAD+ → Glucolactone + GOx − FADH2 (1)

The cofactor is regenerated by reacting with oxygen, leading to the formation of hydrogen
peroxides.

GOx − FADH2 + O2 → GOx − FAD + H2 O2 (2)

Hydrogen peroxide is oxidized at a catalytic, classically platinum (Pt) anode. The electrode easily
recognizes the number of electron transfers, and this electron flow is proportional to the number of
glucose molecules present in blood.

H2O2 → 2H+ + O2 + 2e (3)

Three general strategies are used for the electrochemical sensing of glucose; by measuring oxygen
consumption, by measuring the amount of hydrogen peroxide produced by the enzyme reaction or
by using a diffusible or immobilized mediator to transfer the electrons from the GOx to the electrode.
The number and types of GDH-based amperometric biosensors have been increasing recently. The
GDH family includes GDH-pyrroquinolinequinone (PQQ) and GDH-nicotinamide-adenine
dinucleotide (NAD). The enzymatic reaction of GDH is independent of the dissolved oxygen. The
quinoprotein GDH recognition element uses PQQ as a cofactor.

Glucose + PQQ(ox) → gluconolactone + PQQ(red) (4)

This mechanism requires neither oxygen nor NAD+. GDH-PQQ is a particularly efficient enzyme
system, with a rapid electron transfer rate, but it is relatively expensive.

GDH with NAD as a cofactor produces NADH rather than H2O2. NAD is a major electron acceptor
in the oxidation of glucose, during which the nicotinamide ring of NAD+ accepts a hydrogen ion
and two electrons, equivalent to a hydride ion. The reduced form of this carrier generated in this
reaction is called NADH, which can be electrochemically oxidized.

Glucose+NAD+→gluconolactone+NADHNADH→NAD++H++2e (5)

IV-Semester, Biology for Engineers (BBOK407) Page46 | 46