A Simplified Risk Scoring System For Predicting
A Simplified Risk Scoring System For Predicting
Purpose: The gene expression test (GET) was used to predict the response to chemotherapy and the recurrence risk.
Several randomized clinical trials have demonstrated that some patients with node-positive disease can achieve favorable
survival outcomes even without adjuvant chemotherapy. This study aimed to predict the results of Oncotype DX (Genomic
Health) and MammaPrint (Agendia) using traditional clinicopathological factors.
Methods: We reviewed the records of 311 patients who underwent GET for hormone receptor-positive/human epidermal
growth factor receptor 2 (HER2)-negative primary invasive breast cancer with node-positive disease between 2015 and
2022 at Severance Hospital and Gangneung Asan Medical Center. Univariate and multivariate logistic regression analyses
assessed the relationships between clinicopathological variables and risk stratification using the GET results.
Results: A simple scoring system was created by assigning integer values to each variable. A score of 3 was assigned
for histological grade 3, a score of 2 for pathologic T2 or above, and a score of 1 for a lower progesterone receptor (1–20
or Alled score 3–6), HER2 2-positive, and high Ki-67 (>20). In the validation cohort, overall accuracy was 0.798 (95%
confidence interval, 0.744–0.844).
Conclusion: The high GET risk results can be predicted using traditional clinicopathological factors: tumor size,
progesterone receptor, histological grade, HER2, and Ki-67. These results will be useful for treatment decision-making
among clinically high-risk patients with HR-positive/HER2-negative and node-positive disease, helping to identify patients
to whom the GET assay may not apply.
[Ann Surg Treat Res 2023;105(6):360-368]
Key Words: Breast neoplasms, Gene expression test, Lymphatic metastasis, MammaPrint, Oncotype DX
Received August 18, 2023, Revised September 9, 2023, *Kwang Hyun Yoon and Suk Jun Lee have contributed equally to this work
Accepted October 5, 2023 as co-first authors.
Corresponding Author: Seho Park Copyright ⓒ 2023, the Korean Surgical Society
Division of Breast Surgery, Department of Surgery, Yonsei University cc Annals of Surgical Treatment and Research is an Open Access Journal. All
College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul 03722, Korea articles are distributed under the terms of the Creative Commons Attribution Non-
Tel: +82-2-2228-2134, Fax: +82-2-313-8289 Commercial License ([Link] which
E-mail: PSH1025@[Link] permits unrestricted non-commercial use, distribution, and reproduction in any
ORCID: [Link] medium, provided the original work is properly cited.
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Kwang Hyun Yoon, et al: Traditional factors can predict gene expression result in ALN metastases
poor prognosis and criteria for adjuvant systemic treatment [6]. of ODX and MMP in patients with ER (+), HER2 (−), and ALN
Even with confirmed ALN metastases, some patients with HR metastases.
(+) and HER2 (−) breast cancer tend to show relatively good
oncological outcomes compared with other subtypes, even METHODS
without undergoing chemotherapy (CTx) [7,8]. Previously, CTx
was uniformly administered based on anatomical staging [2]. The project was reviewed and approved by the Institutional
However, due to the high survival rates in these groups, there Review Board (IRB) of the Severance Hospital (No. 4-2023-0725)
has been a shift in research focus toward minimizing the side and Gangneung Asan Medical Center (No. 2023-08-006). The
effects of treatments [9]. Current research aims to tailor these patient’s consent to participate was waived by the IRB owing to
treatments to individuals to reduce side effects and maintain the retrospective nature of the study.
similar or noninferior survival outcomes. Among such research,
the RxPONDER (Rx for Positive Node, Endocrine Responsive Patient selection and histopathologic
Breast Cancer) and MINDACT (Microarray In Node-Negative and characteristics
1 to 3 Positive Lymph Node Disease May Avoid Chemotherapy) Patients with primary breast cancer who underwent
trials are the most representative studies [7,8]. upfront surgery between January 2015 and December 2022
The Oncotype DX (ODX; Genomic Health) is a diagnostic tool were retrospectively selected from the medical databases of
that analyzes the expression of 16 breast cancer-related genes Severance Hospital (Seoul, Korea) and Gangneung Asan Medical
and 5 reference genes in tumor tissues, providing a recurrence Center (Gangneung, Korea). Among these subjects, HR (+), HER2
score (RS) ranging from 0 to 100. This score is used to predict (–), and pathologically node-positive patients were included.
the future risk of recurrence and the potential benefits of CTx. Inclusion criteria were refined for patients who underwent
MammaPrint (MMP; Agendia) analyzes 70 genes to evaluate the genomic profiling tests such as ODX and MMP. A total of 311
risk of distant metastasis within 10 years in early-stage breast patients were included in this retrospective study to predict
cancer. This result is classified as low or high genetic risk. In GET results using traditional clinicopathological factors. The
the case of the low-risk group, they can expect a good prognosis medical database cataloged patient characteristics, including
without CTx, even if they are classified as clinically high risk age at diagnosis, body mass index (BMI), and menopausal
due to ALN metastasis. status. Additionally, it documented the type and results of GET.
Recently, randomized controlled trials have been published Furthermore, it incorporated postoperative pathological results,
using ODX and MMP in patients with breast cancer with encompassing elements such as histological type, histological
ALN metastases. As a result of these studies, it has been grade (HG), the size of invasive breast cancer, the number of
demonstrated that CTx can be omitted in certain patients with lymph node metastases, the ER expression, PR expression,
HR (+), HER2 (−), and ALN metastases who are classified as HER2 expression, and the Ki-67 index. HG was assessed using
clinically high risk. Based on the results of the randomized the modified Bloom-Richardson grading system. Based on the
controlled trial, these gene expression tests (GETs) have become policy of each institution, tumors were classified as positive for
standard tools in treatment decision-making and are included ER and PR if they demonstrated ≥1% of nuclear-stained cells or
in the clinical guidelines of both the American Society of had a score of 3 or more according to the Allred scoring method.
Clinical Oncology and the National Comprehensive Cancer ODX risk groups were stratified into low risk, with RSs ranging
Network [10-13]. from 0 to 25, and high risk, with RSs ranging from 26 to 100.
GET is an important part of decision-making in breast cancer The risk groups for MMP were determined based on the results
treatment; however, several disadvantages exist. In the Korean of the MMP test reports.
healthcare environment, national health insurance does not
cover the cost of these tests, which adds a financial burden to Data and statistical analysis
patients already bearing the cost of breast cancer treatment. GET results were classified as low or high risk. In cases
Additionally, the time-consuming process of these tests can where clinical pathological findings are continuous variables,
delay the initiation of systemic adjuvant CTx for patients until they are converted into binary or multinomial variables for
these results become available. GET is an essential tool to analysis based on medical evidence or distribution. For binary
progress toward tailored treatment by identifying patients who or multinomial variables, according to the results of GET, a chi-
could potentially forego CTx. However, the high cost and the square test or Fisher exact test was performed for comparison.
potential for delay of CTx are major barriers. For these reasons, We reviewed the patient count annually and divided the data
utilizing clinicopathological values to predict the outcomes of into 2 segments: from 2015 to the year when the cumulative
gene expression assays could prove beneficial. This study aimed number of patients reached 75% and the period after that. A
to develop and validate a model for predicting the outcomes predictive model was developed using 75% of the cumulative
patient data, and the remaining 25% was utilized for validation. exist between the 2 groups when categorized based on an
Within the development cohort, linear regression was age threshold of 50 years and menopausal status (52.3 ± 11.1
performed to investigate patient characteristics and traditional years vs. 51.73 ± 9.1 years, P = 0.658). A higher rate of subjects
clinical pathological indicators related to high-risk groups. To with a BMI of 25 kg/m2 or above was observed in the high-
make it simple and practical, points were assigned to each risk group. The histologic grade (17.6% vs. 2.7%, P < 0.001) and
variable as rounded-off integer values based on the estimation nuclear grade (NG; 22.4% vs. 7.1%, P < 0.001) were higher, and
values from the multivariate analysis. The simplified scoring the size of invasive breast cancer was larger (2.0 ± 0.8 cm vs .
system was validated both internally and externally with 2 1.6 ± 0.6 cm, P < 0.001) in the high-risk group. However, there
cohorts. We analyzed the receiver operating characteristic curve were no differences between the 2 groups regarding axillary
and determined the area under the curve (AUC). All statistical nodal burden, lymphovascular invasion, or multicentricity.
analyses were conducted using SAS software ver. 9.3 (SAS The ER score was predominantly high in both groups, with no
Institute) and R software ver. 3.1.1 (The R Foundation), with significant differences observed. However, the high-risk group
P-values less than 0.05 deemed significant. had a greater proportion of individuals with low PR expression
(48.2% vs. 27.4%, P < 0.001), HER2 2 (+) status (41.2% vs. 24.3%,
RESULTS P = 0.012), and high Ki-67 (38.8% vs. 15.9%, P < 0.001).
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Kwang Hyun Yoon, et al: Traditional factors can predict gene expression result in ALN metastases
satisfied the inclusion criteria. A simplified risk scoring and between the T and TNM stages, utilizing the variance
system was developed based on 75% of the patient cohort, inflation factor value. A multivariate regression analysis was
which accounted for 252 patients (76.1%) up until June conducted after excluding the NG and T stages. The results of
2021. The remaining patients were used for validation. No the multivariate regression analysis indicated that T stage, HG,
differences exist in the clinicopathological factors between PR score, HER2 score, and Ki-67 were significant (Table 2). The
the development and validation cohorts. For simplicity in Hosmer-Lemeshow test yielded a chi-square (χ²) value of 2.686
clinical practice, multivariate factors were converted into binary with a P-value of 0.388. To assess the overall impact and for
variables based on medical evidence or distribution. Univariate ease of calculation, scores were assigned to these 5 variables
regression analysis was conducted on the development cohort, based on their β -coefficients. A simple scoring system was
and significant associations were observed between the created by assigning integer values to each variable, rounded up
outcome variable and several factors, including BMI, histology, considering their β-coefficients, and using 1 point as a reference
T stage, TNM stage, HG, NG, PR expression, HER2 score, and point for a PR score of 0.613. Therefore, a score of 3 was assigned
Ki-67. Multicollinearity was examined between NG and HG for HG 3, a score of 2 for pathologic T2 or above, and a score of
Table 2. Univariate and multivariate analyses of the predictive variables of gene expression test high risk on the
development cohort
Univariate analysis Multivariate analysis
Variable
OR (95% CI) P-value β-coefficient (SE) OR (95% CI) P-value
OR, odds ratio; CI, confidence interval; SE, standard error; IDC, invasive ductal carcinoma; ILC, invasive lobular carcinoma; PR,
progesterone receptor; HER2, human epidermal growth factor receptor 2.
1 for a lower PR (1–20 or Alled score 3–6), HER2 2 (+), and high the sensitivity was 0.580 (95% confidence interval [CI], 0.482–
Ki-67 (>20) (Table 3). The sum of each score becomes the total 0.665) (Table 6), specificity was 0.880 (95% CI, 0.843–0.912),
cumulative score, representing the probability of attaining GET positive predictive value (PPV) was 0.645 (95% CI, 0.537–0.740),
high risk. negative predictive value (NPV) was 0.847 (95% CI, 0.812–0.878),
and overall accuracy was 0.847 (95% CI, 0.730–0.919). In the
Model performance and external validation validation cohort, the sensitivity was 0.625 (95% CI, 0.409–
To identify the optimal cutoff point for the AUC, we analyzed 0.757), specificity was 0.930 (95% CI, 0.850–0.979), PPV was 0.769
Youden’s J statistic, which reached its peak at 3.6. To ascertain (95% CI, 0.504–0.931), NPV was 0.870 (95% CI, 0.795–0.915), and
the estimate of GET high risk, we utilized the logistic regression overall accuracy was 0.847 (95% CI, 0.730–0.919). The receiver
formula: 1 / [1 + EXP {−(−1.83 + 0.613 × point)}], to calculate operating characteristic curve’s AUC value for the training set
the estimate of GET high risk for each point (Table 4). When 3.6 was 0.837 (95% CI, 0.710–0.964), with a P-value of less than 0.001,
is used as the cutoff to separate into low and high groups, there indicating that the AUC value was statistically significant (Fig.
is a 65.1% probability that point 4 will be classified as high 1). Similarly, for the validation set, the AUC value was 0.743
through gene expression assays (Table 5). In the training cohort, (95% CI, 0.647–0.811), and it had a P-value of less than 0.001,
demonstrating statistical significance (Fig. 1).
Table 4. The estimated risk percentage at each point in the Development cohort (n = 252)
GET scoring system Low-risk score 161 29
High-risk score 22 40
Risk group Points total Estimate of GET high risk Validation cohort (n = 59)
Low risk 0 0.1382 Low-risk score 40 6
Low risk 1 0.2285 High-risk score 3 10
Low risk 2 0.3534 ODX cohort (n = 106)
Low risk 3 0.5022 Low-risk score 86 3
High risk 4 0.6507 High-risk score 9 8
High risk 5 0.7747 MMP cohort (n = 205)
High risk 6 0.8639 Low-risk score 115 32
High risk 7 0.9214 High-risk score 16 42
High risk 8 0.9558 GET, gene expression test.
GET, gene expression test. Cutoff value is 3.6.
Table 6. Performance of the risk scoring system in the training and validation cohorts
Cohort Sensitivity Specificity PPV NPV Accuracy
Training cohort 0.580 (0.482–0.665) 0.880 (0.843–0.912) 0.645 (0.537–0.740) 0.847 (0.812–0.878) 0.847 (0.730–0.919)
Validation cohort 0.625 (0.409–0.757) 0.930 (0.850–0.979) 0.769 (0.504–0.931) 0.870 (0.795–0.915) 0.798 (0.744–0.844)
ODX cohort 0.727 (0.421–0.922) 0.905 (0.870–0.928) 0.471 (0.272–0.597) 0.966 (0.928–0.990) 0.887 (0.823–0.927)
MMP cohort 0.568 (0.480–0.640) 0.878 (0.828–0.919) 0.724 (0.613–0.817) 0.782 (0.738–0.819) 0.766 (0.703–0.818)
GET, gene expression test; ODX, Oncotype DX (Genomic Health); MMP, MammaPrint (Agendia); PPV, positive predictive value; NPV,
negative predictive value.
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Kwang Hyun Yoon, et al: Traditional factors can predict gene expression result in ALN metastases
A B
1.0 1.0
0.8 0.8
Sensitivity
Sensitivity
0.6 0.6
0.4 0.4
0.2 0.2
AUC, 0.837 (95% CI, 0.710 0.964) AUC, 0.743 (95% CI, 0.647 0.811)
P < 0.001 P < 0.001
0 0.2 0.4 0.6 0.8 1.0 0 0.2 0.4 0.6 0.8 1.0
1-Specificity 1-Specificity
C D
1.0 1.0
0.8 0.8
Sensitivity
Sensitivity
0.6 0.6
good prognosis can be expected with surgery alone, rendering groups with HR (+), HER2 (−) breast cancer, which is predicted
adjuvant systemic CTx unnecessary. The key focus here is on to have a good prognosis, those with ALN metastasis tend to
the selection of patients who are suitable for these treatment be classified as clinically high risk and are often considered for
strategies. Accurate patient classification enables personalized CTx. Due to economic concerns, disparities in medical services
therapies while maintaining favorable oncologic outcomes. and unnecessary treatments should be avoided [14]. For these
Substantial evidence from randomized controlled trials has reasons, numerous studies have been conducted to predict
been discussed thus far. The focus of these studies was on genetic test results based on patient factors and traditional
ODX and MMP, and they have enabled the prediction of patient clinicopathological factors [15-18].
prognosis based on the results of the gene signature [7,8]. Most previous studies primarily focused on ODX or MMP.
Genomic signatures have been incorporated into the Moreover, they were conducted on all patients who underwent
decision-making tools within the guidelines of major medical these tests. While a few studies measured the performance
and oncology societies, such as the American Society of Clinical regarding the major outcome of distant recurrence in the
Oncology, the National Comprehensive Cancer Network, the patient population, our research focused on the results of the
St. Gallen Consensus Conference, and the European Society 2 genetic tests. Therefore, an analysis of the RxPONDER and
for Medical Oncology. However, it is challenging to administer MINDACT trial results is required to apply our research in a
these tests across the board. Financial burdens and issues clinical setting. Through the RxPONDER trial, ODX has been
include delays in adjuvant systemic treatment while waiting for recognized as a tool to prognosticate oncologic outcomes and
the test results. In cases where patients have limitations with predict CTx responses in patients with ALN metastases. In the
these tests, the decision to proceed with CTx is determined case of the RxPONDER trial, all patients had ALN metastases.
by factors such as anatomical stage, breast cancer subtype, However, patients aged under 50 years constituted 21.5% of
Eastern Cooperative Oncology Group status, patient age, and the total. The research results indicated that CTx could be
the preferences of the patients or physicians. Even in patient omitted in cases with an RS of less than 25. However, caution
was needed in the subgroup analysis for patients aged under adjuvant CTx without testing. As such, it is thought that these
50 years. MMP is recognized as a tool for estimating survival patients were likely not included in our study. Physicians at
rates after surgery. Of the 1,550 patients in the MINDACT trial, the 2 institutions conducting the research believe that if ER
47.6% had ALN metastases. According to the recent update on is low, most patients may need CTx. Therefore, there are not
the long-term results of MINDACT, in patients with clinically many patients with low ER in our study. Even excluding ER,
high risk/genetically low risk, there is an absolute benefit of 5% the degree of PR expression was a significant figure in this
± 2.8% in the distant metastasis survival rate with additional study that included both GET. In previous studies examining
CTx. Due to these results, there is a need to be more cautious ODX, PR has been reported as a strong factor that can explain
regarding omitting CTx in patients. up to 23% of the variability in total ODX scores. Additionally,
We conducted a study targeting patients with breast cancer in studies related to PR and breast cancer prognosis, the degree
with ALN metastasis who underwent ODX or MMP. The objective of PR expression has been reported to be associated with the
was to investigate the correlation between the results of GET prognosis of breast cancer [19].
and traditional clinical and pathological factors. In this study, the Our study has several limitations. First, as it was a
multigene analysis revealed a strong association between high retrospective study, selection bias may exist. As a study design
risk and the following factors: pathologic T2, HG 3, PR score (<20 limitation, our cohort has a low proportion of low ER subjects.
or Allred score 3–6), HER2 2 (+), and Ki-67 of >20. Furthermore, Moreover, the rate at which each test was used was influenced
a simple and efficient scoring system was developed using the by the timing of the release of the RxPONDER and MINDACT
estimation of β-coefficients values for each variable. This scoring trials. In other words, the rate of test implementation varies
system allows for easy and rapid assessment of individuals based slightly by year. Furthermore, conducting research solely based
on the identified factors, enabling a practical approach to risk on test results without including actual patient survival data
stratification in clinical settings. In our study, all subjects had requires caution in interpreting and applying the results in
lymph node metastases; approximately 47% were aged under 50 a clinical setting. Caution is necessary when applying and
years, and approximately 65% used MMP for the GET. This study interpreting our study’s results for women aged under 50 years
only confirms the test results without survival data, such as based on the findings of the RxPONDER trial. Similarly, careful
distant metastases. consideration is essential when deciding to omit anticancer
According to previous studies predicting MMP results, there treatment based on the results of the MINDACT trial. Our study
was a negative correlation between MMP results and age. Our is meaningful because it includes the 2 most widely used tests,
study included only patients with ALN metastases among ODX and MMP, and focuses on patients with ALN metastases.
those who underwent MMP. Moreover, it included patients Additionally, we utilized easily assessable traditional clinical
who had undergone ODX, and there was no correlation with pathological factors in breast cancer patients and assigned
age. However, as previously described, caution is needed corresponding scores without complex tools. These scores
in patients aged under 50 years, as with the results of the can be calculated easily and quickly without sophisticated
RxPONDER trial. In actual clinical practice, the extent of ALN instruments. Furthermore, according to performance validation,
metastasis acts as a powerful factor in predicting prognosis. our study showed a high NPV. Thus, our study demonstrates
Macrometastases have worse outcomes than micrometastases, that it can be an excellent tool for effectively identifying
and the need for adjuvant CTx increases as the number of individuals with a high likelihood of being predicted as
lymph node metastases increases. However, in our study, the negative by the GET, even if they have ALN metastases.
number of metastases, and micrometastasis or macrometastasis We developed a simple scoring system to predict GET
did not correlate with the test results. According to this study, results in patients with HR (+), HER2 (−), and ALN metastases.
in breast cancer patients with HR (+), HER2 (−), and ALN (+), According to our study, a score of 3 was assigned for HG 3.
the presence or absence of micrometastasis and the number of Scores of 2 were given for pathologic T2 or above, while scores
lymph node metastases do not affect the results of the GET. of 1 were assigned for PR (1–20 or Alled score 3–6), HER2 2 (+),
In our study, the proportion of patients with a low ER status and high Ki-67 (>20). The sum of each score becomes the total
was tiny, at just 1%. Therefore, verifying any correlation between cumulative score, representing the probability of attaining GET
the ER score and the results of GET was difficult. As Korean high risk. If the total cumulative score is 4 points, there is a 65%
health insurance does not cover the GET and is expensive, probability that the test result will be classified as high risk. In
careful consideration must be given when selecting patients for cases with a lower score, omitting the costly decision-making
testing. Patients with low ER are likely to have a poor response test may be possible.
to hormone therapy. Moreover, they have been diagnosed
with ALN metastases. Due to the physician’s preference, they
may have undergone neoadjuvant CTx or directly received
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Kwang Hyun Yoon, et al: Traditional factors can predict gene expression result in ALN metastases
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