Classification Start
Classification Start
a b
Figure 18.2: Appearances can be deceptive. These mammals look very similar, but they are two different species, classified
in two different orders. a This is a mouse from southern Africa; b this is an antechinus from Australia. The mouse is a placental
mammal and the antechinus is a marsupial.
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Taxonomy is the study and practice of classification, Table 18.1: The classification of African bush elephants and
which involves placing organisms in a series of hibiscus plants.
taxonomic units, or taxa (singular: taxon). In biological
classification, these taxa form a hierarchy. Each kind
of organism is assigned to its own species, and similar
KEY WORDS
species are grouped into a genus (plural: genera). Similar
genera are grouped into a family, families into an order, biological classification: the organisation of
orders into a class, classes into a phylum (plural: phyla) living and extinct organisms into systematic
and phyla into a kingdom. The domain is at the highest groups based on similarities and differences
taxonomic rank in this hierarchical classification system. between species
Table 18.1 shows how African bush elephants and
hibiscus plants (Figure 18.3) are classified. taxonomy: the study and practice of naming and
classifying species and groups of species within
the hierarchical classification scheme
hierarchical classification: the arrangement of
organisms into groups of different rank. The
lowest rank is the species; similar species are
grouped together into the next rank, which is the
genus; this continues to the highest rank, which
is the domain where many species are grouped
together
taxonomic rank: one of the groups used in the
hierarchical classification system for organisms,
e.g. species, genus, family, order, class, phylum,
kingdom and domain
taxon (plural: taxa): a taxonomic group of any
rank, such as a particular species (e.g. Giraffa
camelopardalis), a family (e.g. Elephantidae), a
class (e.g. Mammalia) or a kingdom (e.g. Plantae)
domain: the highest taxonomic rank
kingdom: the taxonomic rank below domain
Figure 18.3: Hibiscus rosa-sinensis is a plant that has spread
from Asia to much of the tropics and sub-tropics. Flower colour
is a good example of the genetic diversity in this species.
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Three domains
Biologists used to divide organisms into two large
groupings based on their cell structure. In Chapter 1 you
saw that prokaryotes and eukaryotes have significantly
different cellular structures. In the 1970s prokaryotes
were discovered living in extreme environments, such
as hot springs where temperatures often exceed 100 °C.
These organisms are called extremophiles and are not
like typical bacteria. Studies revealed that the genes
coding for the RNA that makes up their ribosomes were
more like those of eukaryotes. The extremophiles were Figure 18.4: A deep-sea hydrothermal vent (black smoker)
found to share features with both typical bacteria and surrounded by giant tubeworms. The community relies on
eukaryotes. At this time, studies of molecular biology energy made available by bacteria and archaeans.
assumed a much greater significance in taxonomy.
This meant that a new taxon, the domain, had to be
In several ways, the Archaea appear to have more in
introduced to reflect the differences between these
common with the Eukarya than with Bacteria. It is
extremophiles and typical bacteria. The domain is the
thought that Bacteria and Archaea separated from each
taxon at the top of the hierarchy (Table 18.1). The
other very early in the evolution of life. The Archaea
prokaryotes are divided between the domains Bacteria
and Eukarya probably diverged later.
and Archaea and all the eukaryotes are placed into the
domain Eukarya.
Domain Bacteria
Many Archaea live in extreme environments, such as
hot springs, around deep volcanic vents (black smokers) Bacteria are prokaryotic as their cells have no nucleus.
in the oceans (Figure 18.4) and in lakes where there is a They are all small organisms that vary in size between
very high concentration of salt. Some of them produce that of the largest virus and the smallest single-celled
methane, cannot survive where there is oxygen and have eukaryote.
Look back at Figure 1.30 to remind yourself of these
features and to see how prokaryotic cell structure differs
KEY WORDS
from that of eukaryotes. There are electron micrographs
Bacteria: the domain that contains all prokaryotic of two pathogenic species of bacteria in Chapter 10
organisms except those classified as Archaea (see Figures 10.2 and 10.12). Figure 18.5 shows the
cyanobacterium Nostoc.
Archaea: the domain of prokaryotic organisms
that resemble bacteria but share some features Domain Archaea
with eukaryotes Archaeans are also prokaryotic as their cells have no
Eukarya: the domain that contains all eukaryotic nucleus. Their range of size is similar to that of bacteria.
organisms: protoctists, fungi, plants and animals Many inhabit extreme environments (Figures 18.4
and 18.6).
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IMPORTANT
Characteristic features of eukaryotes
• Cells with a nucleus and membrane-bound organelles
• DNA in the nucleus arranged as linear chromosomes with histone proteins
• Ribosomes (80S) in the cytosol are larger than in prokaryotes; chloroplasts and mitochondria have 70S
ribosomes, like those in bacteria
• Chloroplast and mtDNA is circular as in prokaryotes
• A great diversity of forms: there are unicellular (Figure 18.7), colonial (Figure 18.8) and multicellular
organisms
• Cell division is by mitosis
• Cell walls are present in some eukaryotes
• Many different ways of reproducing – asexually and sexually
IMPORTANT
Characteristic features of protoctists
• Eukaryotic
• Mostly single-celled, or exist as groups of similar cells
• Some have animal-like cells (no cell wall) and are sometimes known as protozoa
• Others have plant-like cells (with cellulose cell walls and chloroplasts) and are sometimes known
as algae
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spores
hypha
mycelium
120 μm
detail of a hypha
vacuole
cytoplasm
Kingdom Plantae
KEY WORD
Plantae (plants) are all multicellular photosynthetic
organisms (Figures 18.11 and 18.12). They have complex Plantae: kingdom of eukaryotic organisms which
bodies that are often highly branched both above and are multicellular, have cell walls that contain
below ground. cellulose and can photosynthesise
IMPORTANT
Characteristic features of plants
• Multicellular eukaryotes with cells that are differentiated to form tissues and organs
• Few types of specialised cells
• Some cells have chloroplasts and photosynthesise (see Figures 1.21 and 1.34)
• Autotrophic nutrition
• Cells have large, often permanent vacuoles for support
• Cell walls are always present and are made of cellulose
• Cells may occasionally have flagella (e.g. male gametes in ferns)
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a b
capsid
double-stranded
DNA
tail sheath
Figure 18.14: a A transmission electron micrograph (TEM) of a T4 bacteriophage – a virus that infects Escherischia coli
bacteria and is used as a vector in genetic modification. The scale bar represents 50 nm. b A diagram of a T4 bacteriophage.
Figure 18.15: A model showing the structure of part of the tobacco mosaic
virus, TMV. The blue strand is the single strand of RNA and the rest is composed
of proteins. In a survey of plant pathologists in 2011, TMV was voted the most
important plant virus.
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Table 18.2: Viruses are classified into four groups according to the type and structure of their nucleic acid.
double-stranded. In cellular organisms, DNA is double- double-stranded. This means there are four groups of
stranded and RNA is single-stranded. But in viruses, viruses. Some examples of viruses in these four groups
both DNA and RNA can be either single-stranded or are shown in Table 18.2.
Question
5 a Explain why viruses are not included in the
three-domain classification system described in
this chapter.
b State the features that are used in the
classification of viruses.
c Should viruses be considered as living
organisms or not?
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18.2 Biodiversity
Biodiversity can be defined as the degree of variation
of life forms in an ecosystem. However, the concept is
considered much wider than just a list of species and is
usually taken to include diversity at three levels:
• the number and range of ecosystems and habitats
• the number of different species in the ecosystem
and their relative abundance
• the genetic variation within each species.
Some areas of the world have very high biodiversity.
Examples of these include the Congo basin in Africa,
South East Asia, the Caribbean and Central America, Figure 18.18: Trees in tropical forests, as here in Costa
Amazonia and south-west Australia. These areas have Rica, are often covered with epiphytes – plants that grow
many endemic species – that is, species that are only on other plants. These provide far more habitats for small
found in these areas and nowhere else (Figure 18.17). animals, such as beetles, than does the bare bark of trees
in temperate forests. One tree in a tropical rainforest can
contain up to 1200 species of beetle.
KEY WORDS
biodiversity: the variety of ecosystems and
species in an area and the genetic diversity
within each species
Figure 18.17: Because New Zealand was isolated for many
millions of years, it has many endemic species and also endemic: of species, a species that is only found
some, like this tuatara, Sphenodon sp., that have become in a certain area and nowhere else
extinct elsewhere. ecosystem: a relatively self-contained,
interacting community of organisms, and the
environment in which they live and with which
they interact
Ecosystems and habitats
community: all of the living organisms, of all
Species do not live in isolation; they share their living
species, that are found in a particular ecosystem
space with others to form communities like that in a
at a particular time
forest (Figure 18.18). These communities of organisms
interact with each other and with their environment.
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Figure 18.19: The niche of this great egret includes the Coral reefs have a very high biodiversity. Such an
freshwater ecosystem where it spends much of its time ecosystem offers many different ecological niches, which
feeding. It also includes the nearby trees where it roosts are exploited by different species. Species diversity is
and nests. considered important because ecosystems with high
species diversity tend to be more stable than ones with
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limited diversity. Highly diverse ecosystems have greater The genetic diversity that exists between varieties of
resilience because they are able to resist changes in cultivated plants and domesticated animals is obvious
environmental factors. because we can see the differences (e.g. between types of
garden rose or breeds of dog). Similar genetic diversity,
Some ecosystems are dominated by one or two species
although not always so obvious, exists in natural
and other species may be rare. This is the case in the
populations (Figure 18.20). The genetic differences
natural pine forests in Florida and temperate forests in
between populations of the same species exist because
Canada, which are dominated by a few tree species.
populations may be adapted slightly differently in
The tropics are important centres for biodiversity. This different parts of their range. There is also genetic
may be because living conditions are not too extreme diversity within each population. This diversity is
(no frost, snow or ice), there is light of high intensity all important in providing populations with the ability to
year round, and birds and mammals do not need to use adapt to changes in biotic and abiotic factors. Such
energy keeping warm. For example, there are about 1500 factors include competition with other species, evading
species of bird in Central America, but only 300 in the new predators, resisting new strains of disease and
Northwest Territories of Canada. changes in temperature, salinity, humidity and rainfall.
Figure 18.20: Phenotypic variation in shells of the land snail Cepaea nemoralis. The differences between them are the result
of different alleles for the genes that control shell colour and number of bands on the shells.
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Assessing species diversity species you can collect and then identify. If you cannot
identify particular species, take photographs of them
Collecting organisms and making and name them as species A, species B, and so on.
Some animals will be hard to find and collect, especially
species lists small ones such as tiny beetles. A pooter is a simple
Imagine you are in an ecosystem like that in piece of apparatus that is used to collect these animals
Figure 18.21. The most obvious species are the (Figure 18.22). Breathing air into the mouth sucks up
large plants and maybe some of the larger animals, small animals into a plastic container. They can be
particularly bird species. The first task when assessing removed and studied and identified using a hand lens,
species diversity is to identify and catalogue the types of and then returned to their habitat.
organism present and build a species list.
It is rare to try to catalogue everything. In an area of
Biologists use identification keys to name the organisms
grassland or woodland, you might choose to concentrate
that they find. There are different forms of key: some
on just one or two groups, such as flowering plants and
have drawings or photographs with identifications;
insects. On a rocky shore, a study may involve the most
others ask a series of questions. The most common of
obvious organisms such as seaweeds and molluscs
these is a dichotomous key. In your own fieldwork, you
(see Worked Example 3).
may use one of these to identify some plant species.
Identification requires good skills of observation.
At first, it is a good idea to do a timed search
throughout the area you are studying to see how many
Figure 18.21: How would you start to investigate and Figure 18.22: This ecologist is using a pooter to collect
catalogue the biodiversity of an area like this? small animals from high in the tree canopy in a Yungas
forest, along the eastern slopes of the Andes in Argentina.
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