Lipids 2
Lipids 2
A fatty acid has a carboxyl group at the polar end and a hydrocarbon
chain at the nonpolar tail. Fatty acids are amphipathic compounds be-
cause the carboxyl group is hydrophilic and the hydrocarbon tail is hy-
drophobic. The carboxyl group can ionize under the proper conditions.
A fatty acid that occurs in a living system normally contains an even
number of carbon atoms, and the hydrocarbon chain is usually un-
branched (Figure 8.1). If there are carbon–carbon double bonds in the
chain, the fatty acid is unsaturated; if there are only single bonds, the fatty
acid is saturated. Tables 8.1 and 8.2 list a few examples of the two classes.
In unsaturated fatty acids, the stereochemistry at the double bond is
usually cis rather than trans. The difference between cis and trans fatty
acids is very important to their overall shape. A cis double bond puts a
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O OH O OH O OH O OH
C C C C
CH2
H2C
CH2
H2C
CH2
H2C
CH2
H2C
CH2 Palmitic acid Stearic acid Oleic acid
H2C
CH2
H2C
CH2
H2C
CH3
O OH O OH O OH
C C C
kink in the long-chain hydrocarbon tail, whereas the shape of a trans fatty acid is
like that of a saturated fatty acid in its fully extended conformation. Note that the
double bonds are isolated from one another by several singly bonded carbons;
fatty acids do not normally have conjugated double-bond systems. The notation
used for fatty acids indicates the number of carbon atoms and the number of
double bonds. In this system, 18:0 denotes an 18-carbon saturated fatty acid with
no double bonds, and 18:1 denotes an 18-carbon fatty acid with one double bond.
Note that in the unsaturated fatty acids in Table 8.2 (except arachidonic acid),
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9
Palmitoleic 16 16:1— CH3(CH2)5CH CH(CH2)7CO2H 0.5
9
Oleic 18 18:1— CH3(CH2)7CH CH(CH2)7CO2H 16
9,12
Linoleic 18 18:2— CH3(CH2)4CH CH(CH2)CH CH(CH2)7CO2H 5
9,12,15
Linolenic 18 18:3— CH3(CH2CH CH)3(CH2)7CO2H 11
5,8,11,14
Arachidonic 20 20:4— CH3(CH2)4CH CH(CH2)4(CH2)2CO2H 50
there is a double bond at the ninth carbon atom from the carboxyl end. The posi-
tion of the double bond results from the way unsaturated fatty acids are synthesized
in organisms (Section 21-6). Unsaturated fatty acids have lower melting points than
saturated ones. Plant oils are liquid at room temperature because they have higher
proportions of unsaturated fatty acids than do animal fats, which tend to be solids.
Conversion of oils to fats is a commercially important process. It involves hydro-
genation, the process of adding hydrogen across the double bond of unsaturated
fatty acids to produce the saturated counterpart. Oleomargarine, in particular, uses
partially hydrogenated vegetable oils, which tend to include trans fatty acids (see
Biochemical Connections 8A).
Fatty acids are rarely found free in nature, but they form parts of many
commonly occurring lipids.
Glycerol is a simple compound that contains three hydroxyl groups (Figure 8.2). glycerol a three-carbon compound that contains
When all three of the alcohol groups form ester linkages with fatty acids, the three hydroxyl groups, one bound to each carbon
resulting compound is a triacylglycerol; an older name for this type of com- triacylglycerol a lipid formed by esterification of
pound is triglyceride. Note that the three ester groups are the polar part of the three fatty acids to glycerol; also called a triglyceride
molecule, whereas the tails of the fatty acids are nonpolar. It is usual for three
different fatty acids to be esterified to the alcohol groups of the same glycerol
molecule. Triacylglycerols do not occur as components of membranes (as do
other types of lipids), but they accumulate in adipose tissue (primarily fat cells)
and provide a means of storing fatty acids, particularly in animals. They serve
as concentrated stores of metabolic energy. Complete oxidation of fats yields
HO OH OH O O O O O O
Charles Grisham, University of Virginia
Myristic Palmitoleic
Stearic
Tristearin
(a simple triacylglycerol) A mixed triacylglycerol
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about 9 kcal g 1, in contrast with 4 kcal g 1 for carbohydrates and proteins (see
Sections 21-3 and 24-2).
When an organism uses fatty acids, the ester linkages of triacylglycerols are
lipases enzymes that hydrolyze lipids hydrolyzed by enzymes called lipases. The same hydrolysis reaction can take
place outside organisms, with acids or bases as catalysts. When a base such as
sodium hydroxide or potassium hydroxide is used, the products of the reac-
tion, which is called saponification (Figure 8.3), are glycerol and the sodium or
potassium salts of the fatty acids. These salts are soaps. When soaps are used
O
with hard water, the calcium and magnesium ions in the water react with the
fatty acids to form a precipitate—the characteristic scum left on the insides of
H2CO C R1 sinks and bathtubs. The other product of saponification, glycerol, is used in
O creams and lotions as well as in the manufacture of nitroglycerin.
HCO C R2
O O
H2COCR1 CH2OC(CH2)16CH3
O Stearyl group
O
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O
C O
CH2
O
C O C H
O CH3
Phosphatidylcholine O– CH3
O O
+
O P O CH2CH2 NH3 O P O CH2
O– O–
H C OH
Phosphatidylethanolamine
O
O P O CH2
O COO–
O–
O P O CH2 CH
Diphosphatidylglycerol (Cardiolipin)
+
O– NH3
H OH
Phosphatidylserine
H H
OH H
H HO
O HO OH
O
H
O P O CH2 CH CH2 O P O
O– OH OH O–
Phosphatidylglycerol Phosphatidylinositol
Waxes are complex mixtures of esters of long-chain carboxylic acids and long- waxes mixtures of esters of long-chain carboxylic
chain alcohols. They frequently serve as protective coatings for both plants acids and long-chain alcohols
and animals. In plants, they coat stems, leaves, and fruit; in animals, they are
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O found on fur, feathers, and skin. Myricyl cerotate (Figure 8.6), the principal
component of carnauba wax, is produced by the Brazilian wax palm. Carnauba
CH3 (CH2)24 C O (CH2)29 CH3
wax is extensively used in floor wax and automobile wax. The principal compo-
Myricyl cerotate
nent of spermaceti, a wax produced by whales, is cetyl palmitate (Figure 8.6).
The use of spermaceti as a component of cosmetics made it one of the most
O highly prized products of 19th-century whaling efforts.
CH3 (CH2)14 C O (CH2)15 CH3 Sphingolipids do not contain glycerol, but they do contain the long-chain
amino alcohol sphingosine, from which this class of compounds takes its name
Cetyl palmitate
(Figure 8.6). Sphingolipids are found in both plants and animals; they are
particularly abundant in the nervous system. The simplest compounds of this
class are the ceramides, which consist of one fatty acid linked to the amino
CH CH(CH2)12CH3 CH CH(CH2)12CH3 group of sphingosine by an amide bond (Figure 8.6). In sphingomyelins, the
CHOH CHOH
primary alcohol group of sphingosine is esterified to phosphoric acid, which,
in turn, is esterified to another amino alcohol, choline (Figure 8.6). Note the
CHNH2 O structural similarities between sphingomyelin and other phospholipids. Two
From
CH2OH CHNHCR fatty long hydrocarbon chains are attached to a backbone that contains alcohol
acid groups. One of the alcohol groups of the backbone is esterified to phosphoric
CH2OH acid. A second alcohol—choline, in this case—is also esterified to the phos-
Sphingosine A ceramide phoric acid. We have already seen that choline occurs in phosphoacylglycer-
(N-acylsphingosine)
ols. Sphingomyelins are amphipathic; they occur in cell membranes in the
nervous system.
CH CH(CH2)12CH3
CHOH
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GM1
GM2
GM3
N-Acetyl-
D-Galactose D-galactosamine D-Galactose D-Glucose
OH H
N-Acetylneuraminidate
(sialic acid)
CH3
CHCH2CH2CH2CH(CH3)2
12 H3C
17
11
H
13
A 1 C D 16 B H3C H
9
2 14 15
10 8 H H
A B
3 5 7 HO
4 6 H Cholesterol
H3C
C O
CH3 OH CH3 OH CH3
C H3C H3C
O HO O
Testosterone Estradiol Progesterone
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Every cell has a cell membrane (also called a plasma membrane); eukaryotic cells
also have membrane-enclosed organelles, such as nuclei and mitochondria. The
molecular basis of the membrane’s structure lies in its lipid and protein compo-
nents. Now it is time to see how the interaction between the lipid bilayer and mem-
brane proteins determines membrane function. Membranes not only separate cells
from the external environment, but also play important roles in the transport of
specific substances into and out of cells. In addition, a number of important en-
zymes are found in membranes and depend on this environment for their function.
Phosphoglycerides are prime examples of amphipathic molecules, and they are
the principal lipid components of membranes. The existence of lipid bilayers
depends on hydrophobic interactions, as described in Section 4-6. These bi-
layers are frequently used as models for biological membranes because they
have many features in common, such as a hydrophobic interior and an ability
to control the transport of small molecules and ions, but they are simpler and
easier to work with in the laboratory than biological membranes.
The most important difference between lipid bilayers and cell membranes
is that the latter contain proteins as well as lipids. The protein component of a
membrane can make up from 20% to 80% of its total weight. An understand-
ing of membrane structure requires knowledge of how the protein and lipid
components contribute to the properties of the membrane.
Hydrophilic
surfaces
Hydrophobic
A tails
Hydrophilic
surfaces
“ ”
Hydrophobic
Hydrophilic tails
surfaces
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+
– Outer
– HO
+
–
+
–
HO
+
–
–
– Inner
+ + +
– + –
–
+
+ –
+ + –
– – –
+
+
– –
+ +
– –
+
+
– –
+
– + Sphingomyelin
OH
Cerebroside
– +
+ –
+ – Ganglioside
– –
Phosphoacylglycerol
– +
+
– –
+ Cholesterol
–
+
e
hob ic cor
ydrop
olar h 5–40Å
Nonp 3
are in contact with water, and the nonpolar tails lie in the interior of the mem-
brane. The whole bilayer arrangement is held together by noncovalent inter-
actions, such as van der Waals and hydrophobic interactions (Section 2-1).
The surface of the bilayer is polar and contains charged groups. The nonpolar
hydrocarbon interior of the bilayer consists of the saturated and unsaturated
chains of fatty acids and the fused-ring system of cholesterol.
Both the inner and outer layers of the bilayer contain mixtures of lipids, but
their compositions differ and can be used to distinguish the inner and outer
layers from each other (Figure 8.11). Bulkier molecules tend to occur in the
outer layer, and smaller molecules tend to occur in the inner layer.
Table 8.3 shows the lipid composition of various types of membranes in rat
liver cells. Note that the distribution of major lipid types such as phosphatidyl-
choline, phosphatidylethanolamine, and cholesterol varies widely.
for straight saturated chains (Figure 8.13). In turn, the disordered structure
Saturated Unsaturated
caused by the presence of unsaturated fatty acids with cis double bonds (and
Polar therefore kinks) in their hydrocarbon chains causes greater fluidity in the bi-
head
layer. The lipid components of a bilayer are always in motion, to a greater ex-
tent in more fluid bilayers and to a lesser extent in more rigid ones.
One
double The presence of cholesterol may also enhance order and rigidity. The fused-
bond ring structure of cholesterol is itself quite rigid, and the presence of cholesterol
stabilizes the extended straight-chain arrangement of saturated fatty acids by
van der Waals interactions (Figure 8.14). The lipid portion of a plant mem-
Hydrocarbon Two brane has a higher percentage of unsaturated fatty acids, especially polyunsatu-
tail double bonds rated (containing two or more double bonds) fatty acids, than does the lipid
portion of an animal membrane. Furthermore, the presence of cholesterol
is characteristic of animal, rather than plant, membranes. As a result, animal
membranes are less fluid (more rigid) than plant membranes, and the mem-
branes of prokaryotes, which contain no appreciable amounts of steroids, are
the most fluid of all. Research suggests that plant sterols can act as natural cho-
lesterol blockers, interfering with the uptake of dietary cholesterol.
CH3 CH3
CH3
CH3
HO CH3
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Heat
With heat, ordered bilayers become less ordered; bilayers that are compara-
tively disordered become even more disordered. This cooperative transition
takes place at a characteristic temperature, like the melting of a crystal, which
is also a cooperative transition (Figure 8.15). The transition temperature is
higher for more rigid and ordered membranes than it is for relatively fluid and
disordered membranes. A powerful method called differential scanning calo-
rimetry (DSC) makes it possible to obtain information about phase transitions
in lipid bilayers. A DSC instrument has a sample cell for the bilayer and a refer-
ence cell containing a standard that will not undergo a phase transition. The
two cells are maintained at a given temperature that is increased in a controlled
fashion by passing an electric current through the cells. When a phase transi-
tion takes place, a different amount of power is needed to maintain the temper-
ature in the two cells. This amount of power can be measured and converted to
a graph that gives information about both the transition temperature and the
amount of energy needed to bring about the phase transition.
looks at some connections between the fatty acid composi-
tion of bilayers and membranes and how they behave at different temperatures.
—
e use the terms animal “fats” and plant “oils” because of Because cardiovascular disease is correlated with diets high
the solid and fluid nature of these two groups of lipids. The in saturated fats, a diet of more unsaturated fats may reduce the
major difference between fats and oils is the percentage of unsat- risk of heart attacks and strokes. Canola oil is an attractive dietary
urated fatty acids in the triglycerides and the phosphoglycerides choice because it has a high ratio of unsaturated fatty acids to satu-
of membranes. This difference is far more important than the rated fatty acids. Since the 1960s, we have known that foods higher
fact that the length of the fatty acid chain can affect the melting in polyunsaturated fats were healthier. Unfortunately, even though
points. Butter is an exception; it has a high proportion of short- olive oil is popular in cooking Italian food and canola oil is trendy
chain fatty acids and thus can “melt in your mouth.” Membranes for other cooking, pouring oil on bread or toast is not appealing.
must maintain a certain degree of fluidity to be functional. Con- Thus companies began to market butter substitutes that were based
sequently, unsaturated fats are distributed in varying proportions on unsaturated fatty acids but that would also have the physical char-
in different parts of the body. The membranes of internal organs acteristics of butter, such as being solid at room temperature. They
of warm-blooded mammals have a higher percentage of saturated accomplished this task by partially hydrogenating the double bonds
fats than do the membranes of skin tissues, which helps keep the in the unsaturated fatty acids making up the oils. The irony here is
membrane more solid at the higher temperature of the internal or- that, to avoid eating the saturated fatty acids in butter, butter sub-
gan. An extreme example of this is found in the legs and the body stitutes were created from polyunsaturated oils by removing some
of reindeer, where marked differences exist in the percentages of of the double bonds, thus making them more saturated. In addition,
saturated fatty acids. many of the soft spreads that are marketed as being healthy (safflower
When bacteria are grown at different temperatures, the fatty acid oil spread and canola oil spread) may indeed pose new health risks.
composition of the membranes changes to reflect more unsaturated In the hydrogenation process, some double bonds are converted to
fatty acids at lower temperatures and more saturated fatty acids at the trans form. Studies now show that trans fatty acids raise the ratio of
higher temperatures. The same type of difference can be seen in eu- LDL (low-density lipoprotein) cholesterol compared to HDL (high-
karyotic cells grown in tissue culture. density lipoprotein) cholesterol, a positive correlator of heart disease.
Even if we look at plant oils alone, we find different proportions Thus the effects of trans fatty acids are similar to those of saturated
of saturated fats in different oils. Table 8.4 gives the distribution for a fatty acids. In the last few years, however, new butter substitutes have
tablespoon (14 g) of different oils. been marketed that advertise “no trans fatty acids.”
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Tropical oils Coconut oil 13 0.7 0.3
Semitropical oils Peanut oil 2.4 6.5 4.5
Olive oil 10.3 1.3
Temperate oils Canola oil 1 8.2 4.1
Safflower oil 1.3 1.7 10.4
Animal fat Lard 5.1 5.9 1.5
Butter 9.2 4.2 0.6
A y Recall that the distribution of lipids is not the same in the inner and outer
F PSF
portions of the bilayer. Because the bilayer is curved, the molecules of the inner
layer are more tightly packed (refer to Figure 8.11). Bulkier molecules, such as
cerebrosides (see Section 8-2), tend to be located in the outer layer. There is very
little tendency for “flip-flop” migration of lipid molecules from one layer of the
x
bilayer to another, but it does occur occasionally. Lateral motion of lipid mole-
cules within one of the two layers frequently takes place, however, especially in
B more fluid bilayers. Several methods exist for monitoring the motions of mole-
F2 y cules within a lipid bilayer. One of the most powerful ways uses fluorescence spec-
F1 troscopy. This method makes use of the fact that some molecules absorb light of
a given wavelength and then re-emit light of another, longer wavelength. Lipid
molecules are not themselves fluorescent, but they can be “tagged” with groups
x that are. Fluorescence can be detected even at very low levels. This fact makes
it possible to use the technique as the basis of fluorescence microscopy, which
will detect the tagged moieties in bilayers. There are many variations in detection
techniques, but in all cases they are based on the re-emitted fluorescent light. The
use of fluorescence can be expanded in studies on actual membranes rather than
bilayers. Membranes contain proteins in addition to the lipid bilayer. The side
chains of tryptophan and tyrosine have intrinsic fluorescence, and this property
can be used to obtain information about the protein portion of the membrane.
Fluorescence spectroscopy is so sensitive that it can be used to detect informa-
tion about single molecules. As shown in Figure 8.16A, a single macromolecule can
be labeled with a fluorescent moiety (the fluorophore, marked F in the figure).
The fluorescent signal is monitored in two dimensions on the oriented sample.
It becomes possible to localize the fluorophore in the molecule. “PSF” stands for
point-spread function, the error of estimate. In Figure 8.16B, two independent fluo-
rophores are present. The distance between them can be determined by subtracting
the distance between the centers of their PSFs.
discusses another application of the physical properties of membranes.
etting a drug to a place where it can be most effective is of obvious form layered structures, and these structures are the key point in de-
importance, with enormous commercial ramifications. A num- veloping a delivery system. In Chapter 2, we saw how amphipathic
ber of technologies have been applied to the task. They include injec- molecules such as fatty acids can form micelles, which are assemblages
tions, topical application to the skin, and implants. Most importantly with a single layer of fatty acids, with the nonpolar tails in the middle
for our purposes, they take advantage of the properties of membranes sequestered from water and the polar heads in contact with water
and model systems for membranes. We have seen how lipid molecules (Figure 2.7). Nonpolar substances can be packaged in micelles for
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delivery where desired. In Chapter 4 and earlier in this chapter, we saw When the magnetic field is removed, the particles cool down, the gel
lipid bilayers (Figure 8.10) with a polar surface and interior and non- expands, and the channels are resealed.
polar portions of the component molecules sandwiched in between. It One of the first suggested uses for this technology is for
is also possible to construct multilayered lipid vesicles. patient-controlled administration of painkillers, but many more ap-
Because the driving force behind the formation of lipid bilayers plications can be expected as time goes on.
is the exclusion of water from the hydrophobic region of lipids, This example of using a synthetic membrane for drug delivery
and not some enzymatic process, artificial membranes can be cre- is but one research result in a very active field. Natural and syn-
ated in the lab. Liposomes are stable structures based on a lipid thetic membranes are being tested, with methods of controlling
bilayer that form a spherical vesicle. These vesicles can be prepared pore size as an important consideration. It is no surprise that the
with therapeutic agents on the inside and then used to deliver the National Institute of Health supports much of this work. Descrip-
agent to a target tissue. tions of many systems can be found at the Pubmed Website (www
To carry the process even further, vesicles can be prepared with .[Link]/pubmed/). We can expect to see many new
embedded artificial substances that can be used to control the pro- ways of drug delivery as time goes on.
cess of release of the therapeutic agent. Some of the embedded
Membrane
NP
acrylamide that is the basis of gels used in electrophoresis. A big
Nanogel NP
difference is that this application is a safe use of the material. NP
Heat
Acrylamides used for electrophoresis are neurotoxic. The size of
NP
the nanogels in their native state exactly matched the width of the NP NP NP NP NP
membrane. In addition, nanoparticles of magnetite (iron oxide)
were embedded in the membrane matrix. Drug Reservoir
When a magnetic field is applied, the magnetite particles
heat up, leading to a rise in temperature of a few degrees in the
PNIPAM. The hydrogel contracts, but the surrounding mem-
brane does not. The result is that channels are formed that allow
passage of a drug from one side of the membrane to the other.
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Rhodopsin
Membrane
a
b
Heterotrimeric G protein
NH3+
Extracellular
side
C C
O O Cytoplasmic
HN S
side
O CH2 CH2
C
–
–OOC
COO–
N–Myristoylation S–Palmitoylation
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component. Transport proteins help move substances in and out of the cell, transport proteins components of a membrane
and receptor proteins are important in the transfer of extracellular signals, that mediate the entry of specific substances into
a cell
such as those carried by hormones or neurotransmitters, into the cell. In ad-
dition, some enzymes are tightly bound to membranes; examples include receptor proteins proteins on a cell membrane
many of the enzymes responsible for aerobic oxidation reactions, which are with specific binding sites for extracellular
substances
found in specific parts of mitochondrial membranes. Some of these enzymes
are on the inner surface of the membrane, and some are on the outer sur-
face. There is an uneven distribution of proteins of all types on the inner and
outer layers of all cell membranes, just as there is an asymmetric distribution
of lipids.
We have seen that biological membranes have both lipid and protein compo-
nents. How do these two parts combine to produce a biological membrane?
Currently, the fluid-mosaic model is the most widely accepted description of fluid-mosaic model the model for membrane
biological membranes. The term mosaic implies that the two components exist structure in which proteins and a lipid bilayer exist
side by side without forming some other substance of intermediate nature. The side by side without covalent bonds between the
proteins and lipids
basic structure of biological membranes is that of the lipid bilayer, with the
proteins embedded in the bilayer structure (Figure 8.20). As time goes on, it is
becoming apparent that preferential association can take place among sphin-
golipids, sterols, and membrane proteins. Lipids are sorted into assemblages
known as rafts, which become the fundamental building blocks on which mem-
brane specificity is based.
Membrane proteins tend to have a specific orientation in the membrane.
The term fluid mosaic implies that the same sort of lateral motion that we have
already seen in lipid bilayers also occurs in membranes. The proteins “float” in
the lipid bilayer and can move along the plane of the membrane.
Electron micrographs can be made of membranes that have been frozen
and then fractured along the interface between the two layers. The outer
layer is removed, exposing the interior of the membrane. The interior has
a granular appearance because of the presence of the integral membrane
Glycolipid
Plasma membrane
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Freeze Fracture Purpose: Quick-frozen cells are fractured to split apart lipid bilayers for analysis
of the membrane interior.
Protocol:
The specimen is frozen quickly in liquid nitrogen The fracture may travel over membrane surfaces as it passes through the
1 2 specimen, or it may split membrane bilayers into inner and outer halves
and then fractured by a sharp blow by a knife edge.
as shown here.
Outer membrane
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Membrane
Side 1 Side 2
The most important question about transport of substances across biologi-
Concentration C1 Concentration C2
cal membranes is whether the process requires the cell to expend energy. In
passive transport, a substance moves from a region of higher concentration to
one of lower concentration. In other words, the movement of the substance is
in the same direction as a concentration gradient, and the cell does not expend
energy. In active transport, a substance moves from a region of lower concen-
tration to one of higher concentration (against a concentration gradient), and
this process requires the cell to expend energy.
The process of passive transport can be subdivided into two categories—
simple diffusion and facilitated diffusion. In simple diffusion, a molecule
moves directly through the membrane without interacting with another mol-
ecule. Small, uncharged molecules, such as O2, N2, and CO2, can pass through G RT ln [C2]
membranes via simple diffusion. The rate of movement through the mem- [C1]
brane is controlled solely by the concentration difference across the membrane
(Figure 8.22). Larger molecules (especially polar ones) and ions cannot pass
through a membrane by simple diffusion. The process of moving a molecule
passively through a membrane using a carrier protein, to which molecules
bind, is called facilitated diffusion. A good example is the movement of glucose
into erythrocytes. The concentration of glucose in the blood is about 5 mM.
The glucose concentration in the erythrocyte is less than 5 mM. Glucose passes passive transport the process by which a
through a carrier protein called glucose permease (Figure 8.23). This process substance enters a cell without an expenditure of
is labeled as facilitated diffusion because no energy is expended and a protein energy by the cell
carrier is used. In addition, facilitated diffusion is identified by the fact that active transport the energy-requiring process
the rate of transport, when plotted against the concentration of the molecule of moving substances into a cell against a
being transported, gives a hyperbolic curve similar to that seen in Michaelis– concentration gradient
Menten enzyme kinetics (Figure 8.24). In a carrier protein, a pore is created by simple diffusion the process of passing through
folding the backbone and side chains. Many of these proteins have several - a pore or opening in a membrane without a
helical portions that span the membrane; in others, a -barrel forms the pore. requirement for a carrier or for the expenditure of
energy
In one example, the helical portion of the protein spans the membrane. The
exterior, which is in contact with the lipid bilayer, is hydrophobic, whereas the facilitated diffusion a process by which
interior, through which ions pass, is hydrophilic. Note that this orientation is substances enter a cell by binding to a carrier
protein; this process does not require energy
the inverse of that observed in water-soluble globular proteins.
Active transport requires moving substances against a concentration gra- sodium–potassium ion pump the export of
dient. It is identified by the presence of a carrier protein and the need for sodium ions from a cell with simultaneous inflow of
potassium ions, both against concentration gradients
an energy source to move solutes against a gradient. In primary active trans-
port, the movement of molecules against a gradient is directly linked to the
hydrolysis of a high-energy molecule, such as ATP. The situation is so mark-
edly similar to pumping water uphill that one of the most extensively studied Erythrocyte Glucose in blood,
conc. 5 mM
examples of active transport, moving potassium ions into a cell and simul-
taneously moving sodium ions out of the cell, is referred to as the sodium– Glucose
Facilitated
potassium ion pump (or Na /K pump). diffusion
permease
Under normal circumstances, the concentration of K is higher inside a cell
than in extracellular fluids ([K ]inside [K ]outside), but the concentration of Na
is lower inside the cell than out ([Na ]inside [Na ]outside). The energy required
to move these ions against their gradients comes from an exergonic (energy- Intracellular
releasing) reaction, the hydrolysis of ATP to ADP and Pi (phosphate ion). There glucose conc.
< 5 mM
can be no transport of ions without hydrolysis of ATP. The same protein appears
to serve both as the enzyme that hydrolyzes the ATP (the ATPase) and as the
transport protein; it consists of several subunits. The reactants and products of
this hydrolysis reaction—ATP, ADP, and Pi —remain within the cell, and the phos-
phate becomes covalently bonded to the transport protein for part of the process.
The Na /K pump operates in several steps (Figure 8.25). One subunit of
the protein hydrolyzes the ATP and transfers the phosphate group to an aspar-
tate side chain on another subunit (Step 1). (The bond formed here is a mixed
anhydride; see Section 1-2.) Simultaneously, binding of three Na ions from the
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Facilitated interior of the cell takes place. The phosphorylation of one subunit causes a
diffusion conformational change in the protein, which opens a channel or pore through
which the three Na ions can be released to the extracellular fluid (Step 2).
Outside the cell, two K ions bind to the pump enzyme, which is still phosphory-
lated (Step 3). Another conformational change occurs when the bond between
v
Passive the enzyme and the phosphate group is hydrolyzed. This second conforma-
diffusion
tional change regenerates the original form of the enzyme and allows the two
K ions to enter the cell (Step 4). The pumping process transports three Na
S
ions out of the cell for every two K ions transported into the cell (Figure 8.26).
The operation of the pump can be reversed when there is no K and a high
concentration of Na in the extracellular medium; in this case, ATP is pro-
duced by the phosphorylation of ADP. The actual operation of the Na /K
pump is not completely understood and probably is even more complicated
than we now know. There is also a calcium ion (Ca2 ) pump, which is a subject
of equally active investigation. Unanswered questions about the detailed mech-
anism of active transport provide opportunities for future research.
Another type of transport is called secondary active transport. An example is
the galactoside permease in bacteria (Figure 8.27). The lactose concentration
inside the bacterial cell is higher than the concentration outside, so moving lac-
tose into the cell requires energy. The galactoside permease does not directly
Outside
–OOC
ATP
CH2
Original ADP
O
conformation
of the protein 3 Na+
P C CH2
2 K+
CH2 COO–
Na+ binding site
Conformational
change and P 2 Conformational
hydrolysis of
i Inside change
4
phosphate bound H2O
to protein
O
P C CH2
O
3 Na+
CH2 C P
O
K+ binding site P C CH2
2 K+
–
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2 K+ 3 Na+ ADP
–
E1 K2 ATP E1 ATP E1 Na3 ATP E1 Na3 P
Na+
ATP
E2 K2 E 2 K2 P E2 P E2 Na2 P
P H2O 2 K+ 2 Na+
The first step in producing the effects of some biologically active substances
is binding the substance to a protein receptor site on the exterior of the cell.
The interaction between receptor proteins and the active substances that bind
to them has features in common with enzyme–substrate recognition. There
is a requirement for essential functional groups that have the correct three-
dimensional conformation with respect to each other. The binding site, whether
on a receptor or an enzyme, must provide a good fit for the substrate. In receptor
binding, as in enzyme behavior, inhibition of the action of the protein by some
sort of “poison” or inhibitor is possible. The study of receptor proteins is less
advanced than the study of enzymes because many receptors are tightly bound
integral proteins, and their activity depends on the membrane environment.
Receptors are often large oligomeric proteins (ones with several subunits), with
molecular weights on the order of hundreds of thousands. Also, quite frequently,
the receptor has very few molecules in each cell, adding to the difficulties of
isolating and studying this type of protein.
gives an example of how important receptor functions can be.
H+ H+
H+ H+
Lactose H+
H+ H+
Galactoside
permease
OUTSIDE
Proton
pump
INSIDE
CO2
Lactose Fuel
H+
H+ H+
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n electron micrographs of fat cells, large fat droplets are easily double mutant that cannot respond to leptin but also lacks perilipin.
visible. Very visible are the large lipid droplets. For decades these In this case the extra fat burning that takes place almost makes up for
structures have been thought of as great balls of fat, a convenient the increased appetite. Further research on such proteins in the mem-
way to store triacylglycerols for consumption. However, these drop- branes of lipid droplets could lead to useful antiobesity therapies.
lets are surrounded by a thin phospholipid membrane that con-
tains many membrane proteins with widely varying activities. On
the negative side, they may also be involved in several lipid diseases,
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LDL
Binding Receptor
LDL
recycled
OUTSIDE
Endocytosis
INSIDE
Receptor
Synthesis
of
receptor
protein
Inhibits
LDL
Oversupply of
cholesterol
Cholesterol
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Growth
Growth hormone receptor Extracellular
hormone
Extracellular domain
Intracellular domain
Kinase domain
Catalytic domain
changes the orientation of the catalytic site of JAK2 activating the enzyme. As we
will see in future chapters, activation of protein kinases is a common and critical
part of cell signaling. Frequently, activating a kinase starts a cascade of phos-
phorylation events that ultimately lead to the observed effect of the hormone.
-carotene an unsaturated hydrocarbon; the The extensively unsaturated hydrocarbon -carotene is the precursor of vitamin A,
precursor of vitamin A which is also known as retinol. As the name suggests, -carotene is abundant in car-
vitamin A the lipid-soluble compound responsible rots, but it also occurs in other vegetables, particularly the yellow ones. When an
for the primary photochemical event in vision organism requires vitamin A, -carotene is converted to the vitamin (Figure 8.31A).
retinol the alcohol form of vitamin A A derivative of vitamin A plays a crucial role in vision when it is bound to a
protein called opsin. The cone cells in the retina of the eye contain several types of
opsin and are responsible for vision in bright light and for color vision. The rod
cells in the retina contain only one type of opsin; they are responsible for vision in
dim light. The chemistry of vision has been more extensively studied in rod cells
than in cone cells, and we shall discuss events that take place in rod cells.
Vitamin A has an alcohol group that is enzymatically oxidized to an aldehyde
retinal the aldehyde form of vitamin A group, forming retinal (Figure 8.31B). Two isomeric forms of retinal, involving
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A
H3C
CH3 CH3 Cleavage
H3C CH3
H3C CH3
CH3 CH3
CH3 -Carotene
CH3 CH3
H3C CH3
7 9 11 13 15
1 6
2
8 10 12 14
OH
2
3 5
4 CH3
Retinol (vitamin A)
B
CH3 CH3
H3C CH3 H H
11
12
OH
CH3
Retinol
Retinol dehydrogenase
CH3 CH3 H
H3C CH3
11
O
12
CH3
11-trans-Retinal
Retinal isomerase
CH3
H3C CH3
11
12
H3C
H O
11-cis-Retinal
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11-cis-Retinal
CH3 Rhodopsin
H3C CH3
11 CH3
H 3C CH3
11
H2O
CH3 H3C
CH3 H3C
O H
Rest of protein
+
N H
+
H3N Rest of protein Imine (Schiff base)
Opsin
cis–trans isomerization around one of the double bonds, are important in the
behavior of this compound in vivo. The aldehyde group of retinal forms an
imine (also called a Schiff base) with the side-chain amino group of a lysine
residue in rod-cell opsin (Figure 8.32).
rhodopsin a molecule crucial to vision; it is The product of the reaction between retinal and opsin is rhodopsin. The
formed by the reaction of retinal and opsin outer segment of rod cells contains flat membrane-enclosed discs, the mem-
brane consisting of about 60% rhodopsin and 40% lipid. For more details about
how rhodopsin plays a role in vision, see .
The several forms of vitamin D play a major role in the regulation of calcium
vitamin D lipid-soluble compound that regulates
calcium and phosphorus metabolism and phosphorus metabolism. One of the most important of these compounds,
vitamin D3 (cholecalciferol), is formed from cholesterol by the action of ultra-
violet radiation from the Sun. Vitamin D3 is further processed in the body to
form hydroxylated derivatives, which are the metabolically active form of this
he primary chemical reaction in vision, the one responsible for brain to be processed as a visual event. The active form of rhodopsin is
generating an impulse in the optic nerve, involves cis–trans isomeri- regenerated by enzymatic isomerization of the all-trans-retinal back to
zation around one of the double bonds in the retinal portion of rho- the 11-cis form and subsequent re-formation of the rhodopsin.
dopsin. When rhodopsin is active (that is, when it can respond to visible Vitamin A deficiency can have drastic consequences, as would
light), the double bond between carbon atoms 11 and 12 of the retinal be predicted from its importance in vision. Night blindness—and
(11-cis-retinal) has the cis orientation. Under the influence of light, an even total blindness—can result, especially in children. On the
isomerization reaction occurs at this double bond, producing all-trans- other hand, an excess of vitamin A can have harmful effects, such
retinal. Because the all-trans form of retinal cannot bind to opsin, all- as bone fragility. Lipid-soluble compounds are not excreted as
trans-retinal and free opsin are released. As a result of this reaction, an readily as water-soluble substances, and excessive amounts of lipid-
electrical impulse is generated in the optic nerve and transmitted to the soluble vitamins can accumulate in adipose tissue.
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11-cis-orientation
H around double bond
CH3
9 11
H
10 12
H 13 H
H3C 14
Sensory Regeneration of
activation active receptor
Light
11-trans-orientation CH3 H
around double bond
9 11
12 H
CH3 H CH3
10
9 11 13 13
CHO H H
12 14
Isomerase H3C
10 14
H H H Regeneration of CHO
11-cis-retinal
All-trans-retinal 11-cis-retinal
+ +
+ +
H3N (CH2)4 Rest of protein H3N (CH2)4 Rest of protein
Opsin Opsin
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Enzymatic
H3C H3C H3C
H3C C D H3C C D
Ultraviolet
A B radiation Cholecalciferol
HO HO (vitamin D3)
Cholesterol 7-Dehydrocholesterol CH2
A
HO
Enzyme
(liver) O2
H3C OH H3C OH
Enzyme
(kidney)
O2
CH2 CH2
HO OH HO
1,25-Dihydroxycholecalciferol 25-Hydroxycholecalciferol
OH
H3C CH3
H3C
CH3 CH3 CH3
O
CH2 CH CH2 CH CH2 CH
H3C CH2 CH2 CH2 CH2 CH2 CH2 CH3
Vitamin E ( -tocopherol)
biomolecules. The antioxidant action of vitamin E has been shown to protect im-
portant compounds, including vitamin A, from degradation in the laboratory; it
probably also serves this function in organisms.
Recent research has shown that the interaction of vitamin E with membranes
enhances its effectiveness as an antioxidant. Another function of antioxidants
such as vitamin E is to react with, and thus to remove, the very reactive and
free radicals highly reactive molecules that have highly dangerous substances known as free radicals. A free radical has at least
at least one unpaired electron one unpaired electron, which accounts for its high degree of reactivity. Free
radicals may play a part in the development of cancer and in the aging process.
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The name of vitamin K comes from the Danish Koagulation because this vitamin vitamin K lipid-soluble compound that plays an
is an important factor in the blood-clotting process. The bicyclic ring system con- important role in blood clotting
tains two carbonyl groups, the only polar groups on the molecule (Figure 8.36).
A long unsaturated hydrocarbon side chain consists of repeating isoprene units,
the number of which determines the exact form of vitamin K. Several forms of
this vitamin can be found in a single organism, but the reason for this variation
is not well understood. Vitamin K is not the first vitamin we have encountered
that contains isoprene units, but it is the first one in which the number of iso-
prene units and their degree of saturation make a difference. (Can you pick out
the isoprene-derived portions of the structures of vitamins A and E?) It is also
known that the steroids are biosynthetically derived from isoprene units, but the
structural relationship is not immediately obvious (Section 21-8).
The presence of vitamin K is required in the complex process of blood clot-
ting, which involves many steps and many proteins and has stimulated numer-
ous unanswered questions. It is known definitely that vitamin K is required to
modify prothrombin and other proteins involved in the clotting process. Spe-
cifically, with prothrombin, the addition of another carboxyl group alters the
side chains of several glutamate residues of prothrombin. This modification
of glutamate produces -carboxyglutamate residues (Figure 8.37). The two
carboxyl groups in proximity form a bidentate (“two teeth”) ligand, which can
bind calcium ion (Ca2 ). If prothrombin is not modified in this way, it does not
bind Ca2 . Even though there is a lot more to be learned about blood clotting
and the role of vitamin K in the process, this point, at least, is well established,
because Ca2 is required for blood clotting. (Two well-known anticoagulants,
dicumarol and warfarin [a rat poison], are vitamin K antagonists.)
A
O
CH3
O
] CH2CH
CH3
Isoprene unit
CH2 ] n H ] CH3
Isoprene unit
]
Vitamin K
B
O
CH3
CH3 CH3
CH3
CH3
(CH2CH C CH2)8 H
O
Vitamin K2 (Menaquinone)
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Glutamic
O C O C COO– COO–
acid
Vitamin K Ca2+
HC CH2CH2COO– HC CH2CH CH Ca2+
residue – –
N H CO2 N H COO COO
Occurs at a total
Prothrombin Modified of 10 glutamic
prothrombin acid residues
O O
H H
C N C C
CH2
O O
CH
C C
– –
O O
Ca(II)
-Carboxyglutamate complexed with Ca(II)
A group of compounds derived from fatty acids has a wide range of physiologi-
prostaglandins derivatives of arachidonic acid cal activities; they are called prostaglandins because they were first detected in
that contain a five-membered ring and are of seminal fluid, which is produced by the prostate gland. It has since been shown
pharmaceutical importance that they are widely distributed in a variety of tissues. The metabolic precursor of
arachidonic acid a fatty acid that contains 20 all prostaglandins is arachidonic acid, a fatty acid that contains 20 carbon atoms
carbon atoms and 4 double bonds; the precursor of and four double bonds. The double bonds are not conjugated. The production
prostaglandins and leukotrienes of the prostaglandins from arachidonic acid takes place in several steps, which are
catalyzed by enzymes. The prostaglandins themselves each have a five-membered
ring; they differ from one another in the numbers and positions of double bonds
and oxygen-containing functional groups (Figure 8.38).
COO–
CH3
O HO
COO– COO–
CH3 CH3
HO HO
OH OH
PGE1 PGE3a
O HO
COO– COO–
CH3 CH3
HO HO
OH OH
PGE2 PGE2a
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The structures of prostaglandins and their laboratory syntheses have been
topics of great interest to organic chemists, largely because of the many physi-
ological effects of these compounds and their possible usefulness in the phar-
maceutical industry (Figure 8.39). Some of the functions of prostaglandins are
control of blood pressure, stimulation of smooth-muscle contraction, and in-
© Jason Stitt/[Link]
duction of inflammation. Aspirin inhibits the synthesis of prostaglandins, par-
ticularly in blood platelets, a property that accounts for its anti-inflammatory
and fever-reducing properties. Cortisone and other steroids also have anti-
inflammatory effects because of their inhibition of prostaglandin synthesis.
Prostaglandins are known to inhibit the aggregation of platelets. They may
thus be of therapeutic value by preventing the formation of blood clots, which
can cut off the blood supply to the brain or the heart and cause certain types of
strokes and heart attacks. Even if this behavior were the only useful property of
prostaglandins, it would justify considerable research effort. Heart attacks and
strokes are two of the leading causes of death in industrialized countries. More
recently, the study of prostaglandins has been a topic of great interest because
leukotrienes substances derived from leukocytes
of their possible antitumor and antiviral activity. (white blood cells) that have three double bonds
Leukotrienes are compounds that, like prostaglandins, are derived from and are of pharmaceutical importance
arachidonic acid. They are found in leukocytes (white blood cells) and have
three conjugated double bonds; these two facts account for the name. (Fatty
acids and their derivatives do not normally contain conjugated double bonds.) H2C CH COO–
Cysteine
Leukotriene C (Figure 8.40) is a typical member of this group; note the 20 S
+
NH3
carbon atoms in the carboxylic acid backbone, a feature that relates this com-
pound structurally to arachidonic acid. (The 20-carbon prostaglandins and COO–
leukotrienes are also called eicosinoids.) An important property of leukotri- Triene
enes is their constriction of smooth muscle, especially in the lungs. Asthma
attacks may result from this constricting action because the synthesis of leu-
kotriene C appears to be facilitated by allergic reactions, such as a reaction to
pollen. Drugs that inhibit the synthesis of leukotriene C are now being used
in the treatment of asthma, as are other drugs designed to block leukotriene
receptors. In the United States, the incidence of asthma has increased drasti-
cally since 1980, providing considerable incentive to find new treatments. The COO–
Centers for Disease Control and Prevention have made information available
on the Internet at [Link] Leukotrienes may also have
inflammatory properties and may be involved in rheumatoid arthritis.
O
Thromboxanes are a third class of derivatives of arachidonic acid. They con-
tain cyclic ethers as part of their structures. The most widely studied member O
of the group, thromboxane A2 (TxA2) (Figure 8.41), is known to induce plate- OH
let aggregation and smooth-muscle contraction. Thromboxane A2
discusses some connections among topics (TxA2)
in this chapter.
latelets are elements in the blood that initiate blood clotting conditions that exist under a large plaque deposit may lead to weak-
and tissue repair by releasing clotting factors and platelet- ness and dead cells in the arterial wall, aggravating the problem.
derived growth factor (PDGF). Turbulence in the bloodstream may Among peoples who depend on fish as a major food source, in-
cause platelets to rupture. Fat deposits and bifurcations of arteries lead cluding some Eskimo tribes, very little heart disease is diagnosed,
to such turbulence, so platelets and PDGF are implicated in blood clot- even though people in these groups eat high-fat diets and have high
ting and growth of atherosclerotic plaque. Furthermore, the anaerobic levels of blood cholesterol. Analysis of their diet led to the discovery
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that certain highly unsaturated fatty acids are found in the oils of fish
and diving mammals. One class of these fatty acids is called omega-3
( 3), an example of which is eicosapentenoic acid (EPA):
CH3CH2(CH CHCH2)5(CH2)2COOH
Eicosapentenoic acid (EPA)
Note the presence of a double bond at the third carbon atom
from the end of the hydrocarbon tail. The omega system of
nomenclature is based on numbering the double bonds from the
last carbon in the fatty acid instead of the carbonyl group (the
delta [ ] system). Omega is the last letter in the Greek alphabet.
The omega-3 fatty acids inhibit the formation of certain pros-
taglandins and thromboxane A, which is similar in structure to
prostaglandins. Thromboxane released by ruptured arteries causes
© Liliya Kandrashevich/[Link]
other platelets to clump in the immediate area and to increase the
size of the blood clot. Any disruption in thromboxane synthesis
results in a lower tendency to form blood clots and, thus, in a lower
potential for artery damage.
Aspirin also inhibits prostaglandin synthesis, although it is less
potent than EPA. Aspirin inhibits the synthesis of the prostaglan-
dins responsible for inflammation and the perception of pain. Aspi-
rin has been implicated in reducing the incidence of heart disease,
probably by a mechanism similar to that of EPA. However, people
who are being treated with blood thinners or who are prone to easy
bleeding should not take aspirin.
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