Characterizing Magnetic Nanoparticles in Serum
Characterizing Magnetic Nanoparticles in Serum
Received 26th September 2019, This mini-review summarizes analytical methods in use to uncover biochemical transformations that
Accepted 5th December 2019
magnetic nanoparticles (MNPs) are possibly undergoing while residing in human blood. Examples from
DOI: 10.1039/c9an01920k the recent literature are presented to illustrate what analytical challenges are to be addressed to shed light
[Link]/analyst on this important issue of biomedical application of MNPs.
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petitive manner. One of the possible binding scenarios is that worth trying. The knowledge of what conjugates serve as the
right upon intravenous injection the corona will be dominated form in which the MNPs reach the desired cells would help
by proteins (or other biomolecules; see below) whose attraction guide an improved design of next generation MNPs. Evidently,
on the nanoparticle surface is kinetically more favorable. the analytical task falls here into the realm of proteomic ana-
Then, over the time of blood exposure, high affinity but lysis presently dominated by mass spectrometry (MS)-based
(usually) lower abundance proteins are replaced by higher technologies.
abundance proteins (for MNPs, this is often albumin13,14). As a final remark of this section, each of the key para-
Second, some experimental evidence has been reported11 meters, characterizing the behavior of MNPs in human blood,
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which reveals that as a temporal situation after injection, other is overly dependent on their properties including the core/
serum biomolecules, e.g. sulfur-containing amino acids, may shell chemistry, shape and size, functionalization, type of mag-
participate in specific binding to MNPs thus initially compet- netism, etc. However, it is beyond the scope of this work to
ing with the proteins. analyze these manifold effects. Also being outside the focus of
It stands to reason that to gain knowledge on how fast and consideration are non-analytical methods, measuring magneti-
complete the conversion of investigational MNPs into a zation, magnetic relaxation, zeta potential, size deviation, etc.
protein-conjugated form takes place, a method of choice is to upon producing a protein corona around MNPs, and mole-
be able to resolve different nano–bio species, evolved upon the cular biology techniques like dot-blot analysis.
residence in human serum, and the intact particles, without
alterations in the separation (or isolation) system. It is worth-
while noting that there is no need to separate MNPs of
Gel electrophoresis
different sizes (see a recent summary of the state-of-the-art
techniques15) since only monodisperse particles are supposed Of the separation-based methods capable of probing protein-
to be administered. When monitoring the transformation of binding interactions, gel electrophoresis (GE) is perhaps the
MNPs, the time frame is of special consideration. It should be simplest approach that can provide initial information on the
complementary to (but not exceeding) the circulation time in composition of MNP–protein coronas.20 Typically, a mixture of
the blood, which varies – in terms of the blood half-life – from MNPs with a biofluid is subjected to heat treatment followed
several minutes (for example, the case of clinically approved by the separation of the denatured proteins by molecular
MNPs16,17) to a few hours, depending particularly on the weight using SDS-PAGE under reducing conditions. The advan-
surface modification,18 but rarely longer. tage of these types of nanoparticles can be taken to separate
(c) Composition of the protein corona. As a matter of fact, them from the excess of biomatrix proteins, prior to the GE
that is rather a loose concept as in a dynamic milieu of circu- analysis, by magnetic separation.21–25 Fig. 1 shows the setup
lating blood, the corona does not reach an equilibrium state.19 and the separation procedure, using a magnetic separator, for
After being continuously changed in composition due to con- removing first the excess (unbound) proteins and then the con-
vection and cellular metabolism, the blood surrounding nano- jugated MNPs. Alternatively, the protein conjugates may be iso-
particles constantly affects the protein corona composition. lated by a standard centrifugation method10,26 (see also a
Nevertheless, any attempt at identification of proteins prevail- study by Monopoli et al.27 on comparison of different isolation
ing in the corona after a certain time, prior to endocytosis, is methods tested with MNPs).
Fig. 1 Schematic representation of magnetic separation including the trapping, protein elution and protein–MNP conjugate elution. Reprinted with
permission from ref. 22. Copyright (2014) Springer Nature.
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In one of the few reports available on using GE, protein below).22,25,29 Similarly, this method was included as a separ-
binding dynamics of the iron oxide NPs of different sizes was ation tool in a western blot assay used to investigate the
investigated in human plasma,21 and the results are summar- binding of specific (complement) proteins to the serum-
ized in Fig. 2. It is evident that the protein adsorption protein corona around magnetic nanoworms and in vivo
increased upon increasing the incubation time, with a satur- dynamic protein exchange.24
ation state being reached after 1 h, and both the protein com- It is quite evident that the GE method, application of which
positions and abundances in the coronas are critically affected for MNPs still lacks two-dimensional mode and using MS-
by the particle size. Alterations in the corona composition and based peptide mass fingerprinting, bears only a supporting
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the amount of surface proteins as a function of exposure time character. Indeed, when applied alone GE could not achieve
were similarly recorded for poly(tert-butoxycarbonyl acrylic deep insight into the modulation of the MNP surface by
acid)-coated MNPs incubated in fetal bovine serum (FBS).23 human blood serum, let alone the exact identification of
However, as only common visualization by silver staining was nano–bio species evolved. The response may arrive from
employed, a global overview on the protein distribution advanced proteomic approaches, one of which based on
between three fractions (<30, 30–100, and >100 kDa) was LC-MS/MS has received some coverage in the area and is con-
merely feasible. For the same reason, no identification of sidered in the next section.
protein-corona composition was attained in other
contributions,10,28 with only different binding patterns being
revealed for particles with unlike coatings.10 Also to be men- Liquid chromatography-tandem mass
tioned are non-physiological conditions used by some authors spectrometry
to produce protein-conjugated particles, such as incubation at
temperatures other than 37 °C (ref. 23) or at varied serum con- This powerful coupling is a pillar technique for proteomics
centrations28 (both never occur in vivo). research and as such presents the most promising method-
As a sample preparation method, SDS-PAGE can be utilized ology for the identification of the protein corona of MNPs
to separate the MNP-binding proteins, isolated from MNPs, for formed in the blood environment. This can be done at the
the following in-gel digestion and LC–tandem MS analysis (see polypeptide level after trypsin digestion of MNP-binding pro-
Fig. 2 SDS-PAGE analysis showing the protein binding profiles of differently sized MNPs incubated in human plasma for different periods of time
(A–C) and the total optical intensities of gel lines (D). Reprinted with permission from ref. 21. Copyright (2014) Elsevier.
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teins, chromatographic separation (with a reversed-phase gra- Chen et al. performed the LC-quadrupole TOF-MS analysis
dient nanosystem) and the precise molecular mass determi- of serum and plasma proteins, bound to dextran-coated mag-
nation by MS, most commonly used in a tandem (MS/MS or netic nanoworms, after their isolation by the elution from par-
MS2) configuration and in combination with bioinformatics ticles with 2% SDS in PBS.24 Interestingly, the binding
computational tools to achieve higher degrees of identifi- outcome was quite different in different biofluids. While in
cation. Yet before such bottom-up profiling, the proteins, par- serum, albumin, immunoglobulins, apo-lipoproteins and C3
ticipating in the formation of the corona, should be isolated were among the most abundant proteins, fibrinogen was
from both MNPs and the biological milieu. highly enriched on the particle surface in plasma. Quantitative
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For this purpose, Bonvin et al. developed an original proteomic analysis showed about 1.6 times more protein
method for isolating human blood and lymph serum proteins bound per particle in plasma than in serum. In the same way,
interacting with uncoated iron oxide NPs, which comprises a Hu and co-workers determined the relative abundances of pro-
multi-step centrifugation procedure.29 This allowed a total of teins attached to the surfaces of iron oxide NPs varying in size,
over 200 proteins to be detected within the corona by LC-MS2 following incubation with human plasma for 1 h.21 The LC-
(Orbitrap technology). However, that study revealed several triple TOF-MS approach in use revealed the selective binding
complications in the application of the developed method- of proteins to the different sizes of MNPs. For instance, HSA
ology. There were certain deviations in the protein compo- was found as the second most abundant protein in the protein
sition between parallel measurements, notable even for the corona around 200 nm MNPs, while it was only the 12th and
20 most-abundant proteins, and these deviations became not among the 20 most abundant proteins for 400 and 30 nm
much more pronounced when an alternative magnetic iso- particles, respectively. As a case study where LC-MS2 and GE
lation method was applied for comparative reasons. Last but techniques were used in conjunction, this work deserves
not least, MNPs were incubated in human serum for 24 h special mentioning. Also, this is conceivably one of the few
which makes the identification results hardly relevant when reports where the authors tried to give an explanation how the
one is asked in what biological form MNPs enter the cell. corona composition is related to a cellular, metabolic,
Ashby and co-workers were able to differentiate the corona pro- immune system and other biological processes (shown in
teins with different binding kinetics toward MNPs, differing in Fig. 3), in which specifically bound proteins can participate.
surface ligand hydrophobicity and particle diameter, by apply- As expected, different surface coatings on MNPs affect the
ing flow field-flow fractionation.26 Due to nonequilibrium sep- composition of the corona of human plasma proteins. In line
aration conditions, only the hard-corona components were with this anticipation, the LC-MS2 assay employed by Vogt
coeluted with the particles from the column, then digested et al.30 provided evidence of very different protein corona sig-
and identified by 2-D LC-MS2. However, human serum natures for silica- versus dextran-coated particles with the same
depleted of HSA and immunoglobulin G used by this group as iron oxide core (and a similar overall size). Regardless of the
the biological medium could compromise identification. particle synthetic identity, the protein corona isolated by mul-
Fig. 3 Biological processes related to plasma proteins identified by LC-MS2 on (A) all three sizes of MNPs and (B) only one specific MNP size (30,
200 or 300 nm). Reprinted with permission from ref. 21. Copyright (2014) Elsevier.
Analyst Minireview
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Spherical iron oxide/30–400/ Human plasma SDS-PAGE, Magnetic separation, digestion Adsorption kinetics, 21
stabilized by PEG LC-MS2 (by heating or trypsinization), identification and
and desalting by SPE (in the quantification of corona
case of LC-MS2) proteins
Spherical iron oxide/coated FBS SDS-PAGE, Magnetic separation and Amount and identity of 22
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with PVA or dextran with NH2, LC-MS2 digestion by heating adsorbed proteins
OH, or COOH groups
Spherical iron oxide/10 or 25/ Human serum depleted LC-MS2 Centrifugation or flow field- Binding kinetics, protein 26
coated with PAA, amphiphilic of HSA and flow fractionation, exchange rates, and the
block copolymer or azelaic immunoglobulin G trypsinization, and desalting composition of the soft and
acid hard corona
Spherical iron oxide/6 or 44/ Human plasma LC-MS2 Centrifugation and digestion Composition of the protein 30
coated with dextran or silica by trypsinization corona
Spherical iron oxide/10/coated FBS SDS-PAGE Digestion by heating Molecular weight distribution 23
with poly(tert-butoxycarbonyl of adsorbed proteins
acrylic acid)
Spherical iron oxide/182/ FBS SDS-PAGE Digestion by heating Amount and size distribution 28
coated with PEI of corona proteins
Worm-like iron-oxide strings/ Human serum and LC-MS Elution with 2% SDS in PBS, Identification and 24
103 in length and 7 in width/ plasma centrifugation, and quantification of corona
coated with dextran trypsinization proteins
Spherical iron oxide/103/ Human serum and FBS LC-MS2 Magnetic separation, Time-resolved number of 25
mesoporous silica shell SDS-PAGE, and trypsinization adsorbed proteins, corona
identification, and
adsorption/desorption
dynamics
Spherical iron oxide/17/ Human blood and LC-MS2 Magnetic separation, digestion Composition of the protein 29
uncoated lymph serum by heating, and SDS-PAGE corona
Spherical iron oxide/coated FBS SDS-PAGE Centrifugation and digestion Protein binding patterns 10
with PMAA or citric acid by heating
Spherical iron oxide/6/coated Human serum ICP-MS Ultrafiltration Binding kinetics 11
with PAA
a
PEG = polyethylene glycol; PVA = polyvinyl alcohol; PAA = poly(acrylic acid); PEI = polyethylenimine; PMAA = poly(methacrylic acid).
Analyst Minireview
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LC-MS/MS is a pivotal technique in proteomics research for identifying protein coronas of MNPs at the polypeptide level after trypsin digestion, providing insight into protein adsorption kinetics, identity, and quantification . However, its limitations include the lack of a standard approach to quantitatively isolate tightly bound protein coronas, making the protein identification potentially ambiguous. This is due to the absence of stoichiometric analysis which challenges the assumption that hundreds of proteins can form a hard corona around a single particle .
Improved identification of tightly bound proteins in MNP coronas is suggested through advanced proteomic techniques such as high-resolution MS or LC-MS/MS, which could provide more precise protein identification and quantification after optimal sample preparation like trypsin digestion and desalting . Challenges remain in developing a customary method for quantitatively isolating the protein corona without altering its composition or inadvertently losing loosely bound proteins, which complicates the distinction and quantification of tightly bound versus transiently associated proteins .
The application of 2D gel electrophoresis (GE) remains limited in the context of protein corona studies on MNPs primarily due to its complexity and the need for enhanced specificity and sensitivity that 2D-GE has yet to fully develop. While GE alone provides a visual profile of protein binding, it lacks the ability to distinguish between complex mixtures of proteins and doesn’t allow for advanced nanoscale insights, which are achievable with mass spectrometry . This limitation underscores the need for integration with more powerful proteomic techniques like LC-MS/MS to provide a comprehensive analysis of the protein corona.
Surface charge greatly impacts protein corona formation around MNPs in FBS, influencing which proteins bind and their abundance. High-abundance proteins like serum albumin were found to exist consistently on particles regardless of surface charge, but the overall protein composition and quantity can vary. The interaction between surface charges and protein electrical properties affects how proteins orient and bind, potentially influencing the biological functionality of the nanoparticles and their interactions within a biological system .
Non-physiological conditions, such as incubating at temperatures other than 37 °C or using varied serum concentrations, can produce misleading results in studies of protein-conjugated nanoparticles because they do not mimic in vivo conditions . This can affect the interaction dynamics and protein composition of the corona on the nanoparticles, leading to results that are not representative of natural biological environments. Consequently, it might lead to incorrect conclusions about the nanoparticles' behavior in real-world biological scenarios.
The size and surface coating of MNPs significantly affect the protein corona's composition formed in human plasma. For example, human serum albumin (HSA) is the second most abundant protein in the corona around 200 nm MNPs, but it is only the 12th most abundant for 400 nm particles and not even among the top 20 for 30 nm particles . Additionally, different coatings, such as silica versus dextran, yield distinct protein corona signatures on particles with otherwise similar cores and sizes . This indicates that both particle size and surface characteristics influence the binding dynamics and composition of the corona proteins.
Understanding the 'hard' and 'soft' corona is essential for analyzing MNP interactions because these layers determine how nanoparticles interact with biological environments. The 'hard' corona consists of proteins that are tightly bound, affecting the particle's biological identity over time, while the 'soft' corona represents proteins that transiently interact. These layers influence how the immune system perceives nanoparticles, their biodistribution, and cellular uptake . Knowledge of these factors is crucial for designing nanoparticles with desired therapeutic or diagnostic properties.