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Plant Biochemistry Course Overview

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218 views2 pages

Plant Biochemistry Course Overview

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cybersopore3
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© © All Rights Reserved
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BACHELORS WITH BOTANY AS MAJOR

Semester 4th
BOT422J3 BOTANY _ PLANT BIOCHEMISTRY
(CREDITS: THEORY: 04; PRACTICALS: 02)
Objectives: To give students understanding about the structure, properties, functions and synthesis of
important biomolecules involved in various biochemical pathways, enzymes and their
biological roles.

THEORY (4 CREDITS; 60 LECTURES)

UNIT 1: CARBOHYDRATES AND FATS


Carbohydrates: Classification, occurrence, structure and biological significance of monosaccharides,
oligosaccharides and polysaccharides (including sucrose, starch, cellulose and pectin).
Lipids: Occurrence, structure and functions of triacylglycerols and phospholipids; Types, properties and
biological significance of fatty acids and steroids.

UNIT 2: PROTEINS, AMINO ACIDS AND NUCLEOTIDES


Proteins: Classification of proteins according to solubility and structure, conjugate proteins.
Amino acids: Structure, properties and biological significance of amino acids.
Nucleotides: Structure, properties and significance of nucleosides and nucleotides. Nucleic acids:
Structure, properties and biological significance of DNA and RNA.

UNIT 3: ENZYMES
Enzymes: Nature, properties, classification & nomenclature of enzymes; Mode (Lock & key model,
Induced-fit hypothesis) and mechanism of enzyme action; Isoenzymes
Enzyme kinetics: Factors affecting enzyme activity; Michaelis-Menten equation; Km and its
significance.
Regulation of enzyme action: Reversible and irreversible inhibition; Competitive and non-competitive
inhibitions; Feedback inhibition
Coenzymes: Types and their biological roles.

UNIT 4: SYNTHESIS OF BIOMOLECULES


Lipid Synthesis: Biosynthesis of fatty acids and glycerol; Assembly of membrane lipids, storage lipids
and structural lipids.
Carbohydrate biosynthesis: Synthesis of sucrose (feed-forward and feedback control of sucrose
synthesis); Regulation of starch synthesis in chloroplast and storage tissues.

PRACTICAL/LAB COURSE (2 CREDITS)

1. Qualitative tests for carbohydrates


2. Analytical test for reducing sugars, non-reducing sugars
3. To determine the presence of lipids or oils in seeds by stain test.
4. Analytical tests for proteins.
5. To study the effect of organic solvents and temperature on membrane permeability
6. To study the activity of catalase and peroxidase
7. To study the effect of pH and temperature on the activity of catalase.
8. To study the morphology of nodules in roots of legumes.
SUGGESTED READING:

1. Nelson, D.L., Cox, M.M. and Hoskins, A.A. 2021. Lehninger Principles of Biochemistry (8th
Edition). W.H. Freeman and Company, New York, USA.
2. Nelson, D.L. and Cox, M.M. 2017. Lehninger Principles of Biochemistry (7th Edition).
W.H. Freeman and Company, New York, USA.
3. Voet, D., Voet, J. G. and Pratt, C. W. 2016. Fundamentals of Biochemistry: Life at the
Molecular Level (5th Edition). John Wiley and Sons, Inc. USA.
4. Berg, J.M., Tymoczko, J.L., Gatto, G.J. and Stryer, L. 2015. Biochemistry (8th edition).
W.H. Freeman and Company, New York, USA.
5. Taiz, L., Moller, M., Murphy, A. andZeiger, E. 2022. Plant Physiology and Development
(7th Edition).Sinauer Associates, Inc. Publishers, USA.
6. Taiz, L., Zeiger, E., Moller, I.M. and Murphy, A. 2015. Plant Physiology and Development
(6th edition). Sinauer Associates Inc. USA.
7. Walter.H, Heldt and Piechulla.B. (2010).Plant Biochemistry(4th edition).Academic Press
8. Poonia, N.S. (2007). Plant Biochemistry, Agrobios (India)
9. Campbell, M.K. (2012). Biochemistry (7th ed.). Published by Cengage Learning
10. Buchanan, Gruissem and Jones. 2015. Biochemistry and Molecular Biology (2nd edition).
Wiley- Blackwell
11. Harborne, J.B.1973. Phytochemical Methods. John Wiley & Sons, New York.

Common questions

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Enzymes regulate carbohydrate biosynthesis by controlling the flow of metabolites through pathways that synthesize sucrose and starch. The synthesis of sucrose involves enzymes such as sucrose-phosphate synthase, which catalyzes the production of sucrose-6-phosphate, eventually forming sucrose. Enzyme activity is regulated by factors like allosteric effectors and phosphorylation. In starch synthesis, enzymes like ADP-glucose pyrophosphorylase control the activation of glucose units for polymerization. Both pathways are tightly regulated by feedback mechanisms and environmental conditions to ensure proper energy storage and utilization in plants .

The structure of nucleotides, which consists of a nitrogenous base, a sugar (ribose or deoxyribose), and a phosphate group, facilitates their role in cellular functions. Their ability to form hydrogen bonds allows them to pair up specifically, which is crucial for the encoding of genetic information in DNA and RNA. The presence of phosphate groups in nucleotides contributes to their energy currency roles, such as in ATP (adenosine triphosphate), which can donate energy to power various cellular processes. Besides, their structural diversity aids in the regulation of enzyme activity and serves as signaling molecules in cellular pathways .

Triacylglycerols, composed of three fatty acid chains esterified to a glycerol molecule, primarily serve as energy storage molecules. Their hydrophobic nature allows them to pack densely, making them efficient long-term energy reserves. In contrast, phospholipids contain two fatty acid tails and a phosphate group attached to glycerol. This structure gives phospholipids amphipathic properties, enabling them to form the bilayer of cell membranes, essential for cellular compartmentalization and function. The differences in their structures thus align with their distinct roles in biological systems .

The properties of amino acids, dictated by their side chains (R groups), influence protein structure through intramolecular forces such as hydrogen bonds, ionic interactions, hydrophobic effects, and van der Waals forces. The sequence of amino acids (primary structure) impacts the folding and stability of proteins, resulting in specific secondary, tertiary, and quaternary structures that define a protein's function. Polar amino acids typically occupy external positions to form interactions with the aqueous environment, while nonpolar amino acids cluster internally, stabilizing the protein structure. Proper protein folding is critical for its biological activity and interaction with other molecules .

Studying the effect of pH and temperature on catalase activity is important as it reveals how environmental factors influence enzyme function. Catalase, which breaks down hydrogen peroxide into water and oxygen, is crucial for detoxifying reactive oxygen species. Variations in pH and temperature can alter enzyme conformation and active site geometry, affecting its activity and stability. By understanding these effects, researchers can infer optimal conditions for enzyme performance, which is critical in fields like medicine and industrial applications where enzyme efficiency impacts processes and outcomes .

Feedback inhibition is a critical regulatory mechanism in biochemical pathways where the end product of a pathway inhibits an enzyme involved in its early steps. This prevents the overaccumulation of the end product and conserves cellular resources by halting the pathway when the product is abundant. It ensures homeostasis within the cell, allowing metabolic pathways to adapt to changes in cellular demands. Feedback inhibition exemplifies efficient control mechanisms within cells and helps maintain metabolic balance, highlighting its significance in biological systems .

The lock and key model and the induced-fit hypothesis describe how enzymes achieve specificity. The lock and key model suggests that enzymes (lock) have a specific shape that precisely fits the substrate (key), explaining the selectivity and specificity of enzyme-substrate interactions. In contrast, the induced-fit hypothesis posits that the active site of the enzyme changes shape upon substrate binding, becoming complementary to the substrate, which optimizes binding. Both models highlight the dynamic interaction between enzymes and substrates, providing insight into how enzymes facilitate specific biochemical reactions .

Coenzymes are organic molecules that bind to enzymes and assist in the enzyme-catalyzed reactions by serving as carriers of electrons, atoms, or functional groups. They participate in the reaction by undergoing temporary changes during the process, which helps facilitate the transformation of substrates into products. Examples include NAD⁺, which acts as an electron carrier in redox reactions, and Coenzyme A, which is essential in the transfer of acyl groups during metabolic processes such as the Krebs cycle. Coenzymes expand enzyme functionality, allowing for diverse biochemical reactions necessary for cellular functions .

The Michaelis-Menten equation describes how enzyme activity is influenced by substrate concentration. The factors impacting enzyme activity include substrate concentration, enzyme concentration, temperature, and pH. The Km value, or Michaelis constant, represents the substrate concentration at which the reaction velocity is half of its maximum. It reflects the affinity of the enzyme for the substrate; a lower Km indicates a higher affinity. Understanding Km helps characterize enzyme behavior in metabolic pathways, allowing for the study of enzyme efficiency and its regulation within biological systems .

Fatty acid biosynthesis involves the combination of acetyl-CoA and malonyl-CoA units to form saturated fatty acids through iterative processes of condensation, reduction, dehydration, and reduction facilitated by the enzyme complex fatty acid synthase. In contrast, membrane lipid assembly involves incorporating these fatty acids into phospholipid molecules, involving processes such as glycerol-3-phosphate acylation and phosphorylation, resulting in varied structural lipids that integrate into cellular membranes. This differentiation in processes allows fatty acids to not only serve as precursors but also form functional components of cellular structures .

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