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Chemical Building Blocks of Life

The document discusses the chemical building blocks of life including carbon, functional groups, bonds, redox reactions, isomers, chiral molecules, biological macromolecules, carbohydrates, nucleic acids, and other important nucleotides. It covers topics like carbon's ability to form various bonds, functional groups and their properties, redox reactions, isomer types, chirality, polymer formation, carbohydrate classes and structures, nucleic acid composition and roles, and more essential biomolecules.

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Georges Sarkis
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0% found this document useful (0 votes)
4 views9 pages

Chemical Building Blocks of Life

The document discusses the chemical building blocks of life including carbon, functional groups, bonds, redox reactions, isomers, chiral molecules, biological macromolecules, carbohydrates, nucleic acids, and other important nucleotides. It covers topics like carbon's ability to form various bonds, functional groups and their properties, redox reactions, isomer types, chirality, polymer formation, carbohydrate classes and structures, nucleic acid composition and roles, and more essential biomolecules.

Uploaded by

Georges Sarkis
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
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Georges Sarkis

Chapter 3: The chemical building blocks of life

1- Carbon: The Framework of Biological Molecules

o Biological molecules consist primarily of :


• carbon bonded to carbon: C-C or
• carbon bonded to other atoms e.g. hydrogen, oxygen, nitrogen,
sulfur: C-H, C=O, C-N, C-S

o Carbon can form up to 4 covalent bonds, a covalent bond being a chemical


bond that involves the sharing of electron pairs between atoms.

o Molecules consisting of only C and H are called hydrocarbons and C-H


covalent bonds store considerable energy.

o Carbon may be bonded to functional groups with specific properties.

2- Functional groups

o In organic chemistry, a functional group is a specific group of atoms or


bonds within a compound that is responsible for the characteristic chemical
reactions of that compound.
Example: Polar, acidic, basic.
3- Chemical bonds

o Electronegativity is an atom’s affinity for electrons.

o Differences in electronegativity define how electrons are distributed in


covalent bonds.
• nonpolar covalent bonds = equal
sharing of electrons. e.g. C-C or C-H
• polar covalent bonds = unequal sharing
of electrons. e.g. C-O or O-H or S-H

4- Bonds and interactions

5- Redox reaction

o Electrons can be transferred from one atom to another, while still retaining
the energy of their position in the atom.
• oxidation = loss of an electron
• reduction = gain of an electron

o Redox reaction = oxidation + reduction in the same chemical reaction


6- Isomers

o Isomers are molecules with the same chemical formula.


• Structural isomers are Isomers with differences in the structure of
their carbon skeleton
• Stereoisomers are isomers with the same carbon skeleton but with
differences in how the groups attached to this skeleton are arranged in
space.

o Enzymes usually recognize a single specific stereoisomer.

7- Chiral molecules

o When carbon is bound to four different groups, the resulting molecule is said
-
to be chiral.

o Chiral molecules are mirror-images of each other.

o Chiral molecules are enantiomers, meaning pairs of stereoisomers which are


mirror images of each other.

o Chiral compounds are characterized by their effect on polarized light.


Polarized light has a single plane, and chiral molecules rotate this plane to
either the right or the left. We therefore call the two chiral forms D for
dextrorotatory and L for levorotatory.

o Living cells tend to produce a single enantiomer.

8- Biological Molecules

o Biological molecules are typically large molecules -macromolecules-


constructed from smaller subunits

• Monomer: single subunit


• Polymer: many units
9- Dehydration synthesis and hydrolysis

o Dehydration synthesis
• Formation of large molecules by the removal of water .
• Monomers are joined to form polymers

o Hydrolysis: breakdown of large molecules by the addition of water

10 – Carbohydrates

o Carbohydrates are Molecules with a 1:2:1 ratio of carbon, hydrogen and


oxygen.

o Their empirical formula is (CH2O)n, with n being the number of carbons.

o Because they contain many carbon–hydrogen (C—H) bonds, which release


energy when oxidation occurs, carbohydrates are well suited for energy
storage.

o Monosaccharides, Disaccharides and Polysaccharides are all carbohydrates

11- Monosaccharides

o Monosaccharides are simple sugars that have 3-carbon, 5-carbon or 6-carbon


sugars.

o 5- and 6-carbon sugars can exist in straight-chain form or form rings in


water

a- Glucose

o Glucose is a monosaccharide with 6 carbons, thus a6 carbon.


Glucose is very important in energy storage and exists in two
different forms depending on the orientation of the carbonyl
group (C=O): alpha (α) and beta (β).

o Fructose is a structural isomer of glucose


o Galactose is a stereoisomer of glucose
12- Disaccharides

o Disaccharides are 2 monosaccharides linked together by dehydration


synthesis.
They are used for sugar transport (in plants) or energy storage (in animals).

o sucrose = glucose + fructose (table sugar / main transport sugar in plants).

o lactose = glucose + galactose (milk sugar / main energy source in


mammals).

o maltose = glucose + glucose (energy storage in grains)


12- Polysaccharides

o Polysaccharides are long chains of sugar made up of monosaccharides that


have been joined through dehydration reactions.

o Starch, a storage polysaccharide, consists entirely of α-glucose molecules


linked in long chains.

o Cellulose, a structural polysaccharide, also consists of glucose molecules


linked in chains, but these molecules are β-glucose.

o Because starch is built from α-glucose we call the linkages α linkages;


cellulose has β linkages.

13- Starches

o Organisms store the metabolic energy contained in monosaccharides by


converting them into disaccharides, such as maltose. These are then linked
together into the insoluble polysaccharides called starches. These
polysaccharides differ mainly in how the polymers branch.

o Amylose = hundreds of α-glucose molecules linked together (α -1,4


linkages) unbranched, forms starch granules, insoluble in water

o Amylopectin = hundreds of α-glucose molecules (α -1,4 linkages) +


branched subunits (α -1,6 linkages)

14- Glycogen

The comparable molecule to starch in animals is glycogen. Like amylopectin,


glycogen is an insoluble polysaccharide containing branched amylose chains.
Glycogen has a much longer average chain length and more branches than plant
starch.
15- Cellulose

o Cellulose is a polymer of β-glucose. These long, unbranched β-linked chains


make tough fibers.

o Cellulose is the chief component of plant cell walls.

o It is chemically similar to amylose, with one important difference: it is not


breakable by enzymes.

16- Chitin

o Chitin is a modified form of cellulose.

o It is a structural material in arthropods and fungi (hard exoskeleton of insects


and crustaceans).

17- Nucleic acid

o There is two types of Nucleic acids:


• DNA: deoxyribonucleic acid: its role is the storage and transmission
of genetic information
• RNA: ribonucleic acid: its role is the use of genetic information and
protein synthesis.

o Properties of DNA:
• replication/duplication: cell division and reproduction
• transcription into RNA

o Properties of messenger RNA


• translation into proteins
18- Properties of nucleic acids

o Nucleic acids are polymers of nucleotides. They are made of sugar, a


phosphate group (-PO4) and a nitrogenous base
The sugar is deoxyribose in DNA and ribose in RNA.

o Nitrogenous bases include


• purines: adenine and guanine
• pyrimidines: thymine (in DNA), cytosine, uracil (in RNA).

o A nucleic acid, is a chain of 5-carbon sugars linked together by


phosphodiester bonds with a nitrogenous base protruding from each sugar
(see figure 3.15a). These chains of nucleotides, polynucleotides, have
polarity, or different ends: a phosphate on one end and an —OH from a
sugar on the other end. We conventionally refer to these ends as 5 ́ (“five-
prime,” —PO4−) and 3 ́ (“three-prime,” —OH) taken from the carbon
numbering of the sugar.

19 – DNA vs RNA
20 – Other nucleotides

o ATP: adenosine triphosphate


• primary energy currency of the cell

o NAD+: nicotinamide adenine dinucleotide

o FAD: flavin adenine dinucleotide


• electron carriers for many cellular reactions

Common questions

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Dehydration synthesis reactions involve the removal of water molecules to join monomers into polymers, forming larger macromolecules such as proteins, polysaccharides, and nucleic acids. Conversely, hydrolysis reactions add water to break bonds in polymers, reducing them back into monomers. These opposing processes are essential for the dynamic assembly and disassembly of macromolecules, allowing biological systems to adapt to changes and perform complex functions .

Carbon's ability to form four covalent bonds allows it to bond with other carbon atoms as well as a range of different elements, such as hydrogen, oxygen, nitrogen, and sulfur, creating a vast diversity of stable compounds. This versatility is fundamental to the complexity of biological molecules, enabling the formation of chain and ring structures that constitute the backbone of macromolecules such as proteins, lipids, carbohydrates, and nucleic acids .

Starch consists of α-glucose molecules linked by α-1,4 glycosidic bonds, resulting in structures such as amylose and amylopectin, which are used for energy storage in plants. Cellulose, however, consists of β-glucose molecules linked by β-1,4 glycosidic bonds, forming rigid fibers that are not digestible by most animals. This structural difference makes cellulose suitable for its role as a component of plant cell walls, providing strength and support .

Nucleic acids are ideal for storing genetic information due to their stable polynucleotide chain formed by phosphodiester bonds and complementary base pairing. DNA, in particular, has a double helix structure that allows it to be efficiently packed into chromosomes while protecting the genetic code from damage. The specific pairing between adenine-thymine and guanine-cytosine ensures accurate replication and transcription, preserving genetic integrity across generations .

Chiral molecules are critical in biological processes because they can exist as enantiomers, which are mirror images of each other, and often only one enantiomer is biologically active. This is significant in enzymatic reactions where enzymes typically only recognize one specific stereoisomer. The chirality affects how these molecules interact with biological systems, including receptors and other proteins, influencing processes such as drug effectiveness and metabolic pathways .

The structure of ATP contains three phosphate groups linked by high-energy bonds. The terminal phosphate bond can be quickly hydrolyzed to release energy that can be used by cells for various functions, including mechanical work, building macromolecules, and active transport. ATP's ability to readily donate a phosphate group makes it a versatile and efficient carrier and transfer of energy within the cell .

Functional groups are specific groups of atoms within molecules that have consistent properties, influencing the molecule's chemical reactivity regardless of the molecular structure they are attached to. They determine the molecule's characteristics, such as polarity, acidity, and base strength, and dictate its behavior in chemical reactions. For example, hydroxyl groups make alcohols polar and able to form hydrogen bonds, whereas carboxyl groups confer acidic properties to molecules .

Stereoisomers such as glucose, fructose, and galactose play distinct roles in biological systems despite having the same molecular formula. The different spatial arrangements of atoms in these isomers influence how they are recognized and metabolized by enzymes. For example, only specific isomers can participate in certain biochemical pathways or interact with specific transporters and receptors. This specificity is vital for metabolic regulation and efficiency in biological systems .

Redox reactions are crucial in biological systems as they involve the transfer of electrons between molecules, playing a key role in energy transfer. In these reactions, electrons carry potential energy from one molecule to another. Oxidation is the loss of electrons, while reduction is the gain of electrons. These processes are integral to cellular respiration and photosynthesis, allowing cells to produce ATP and other energy-carrying molecules that power cellular activities .

DNA and RNA differ in structure and function. DNA is double-stranded, with deoxyribose as its sugar and uses thymine as one of its nitrogenous bases. It serves as the long-term storage of genetic information, providing instructions for cellular processes. RNA is typically single-stranded, contains ribose, and uses uracil instead of thymine. RNA's primary role is in the translation of genetic information from DNA into proteins and can have structural, catalytic, or regulatory functions in the cell .

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