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Microscope Techniques and Staining Methods

This document discusses various biological techniques used to study microorganisms, focusing on microscopy. It describes the basic parts and use of compound microscopes, as well as methods for slide preparation including wet mounts, fixation, and staining. Specific staining techniques are categorized as simple or differential stains depending on whether all structures are colored the same. Examples of different types of microscopes are provided including compound, transmission electron, scanning electron, and stereomicroscopes.
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0% found this document useful (0 votes)
15 views5 pages

Microscope Techniques and Staining Methods

This document discusses various biological techniques used to study microorganisms, focusing on microscopy. It describes the basic parts and use of compound microscopes, as well as methods for slide preparation including wet mounts, fixation, and staining. Specific staining techniques are categorized as simple or differential stains depending on whether all structures are colored the same. Examples of different types of microscopes are provided including compound, transmission electron, scanning electron, and stereomicroscopes.
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd

SH1909

BIOLOGICAL TECHNIQUES
Methods and procedures used by Biologists to
study macro- and microorganisms.

MICROSCOPY
• Provides a magnified image of organisms
or cells
• Classified into different types based on
method of magnification, and purpose
• Modern compound microscopes are Condenser & Diaphragm
composed of two (2) lenses which provide
magnification: Objective Lens and the
Ocular Lens. Generally, it consists of the
following:
o The Ocular lens (found inside the
eye piece) is where the final Image 1.0 Parts of a Microscope
Source: [Link]
magnified image can be viewed, it microscope-and-its-functions
usually has a magnification of 10x
USING A COMPOUND MICROSCOPE
or 15x 1. Set up the light source by adjusting the mirror
found at the base of the microscope, or simply
o The Objective Lenses (found plugging it in and turning on the lamp (if it is
attached to the nosepiece), vary in electronic).
levels of magnification from x4 up
to x1000 or more. Each objective is 2. Ensure that the stage is at the lowest level and
represented by particular color (i.e. the objective you are using is the lowest power
scanner=red) (usually the scanner, which is 4x magnification).

o The Condenser & Diaphragm is 3. Ensure that the nose piece and eye piece is
responsible for the regulation of locked in place.
light for brightness and contrast
adjustments 4. Place the prepared slide (with a cover slip) onto
the stage and center the specimen. Lock it in place
using the stage clips.

5. Using the coarse focus knobs, slowly bring the


stage upward enough to see at least a blurred

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version of the specimen you’re trying to view. Use smears of the specimen are briefly run
the fine focus knob to see the individual structures through a heat source. Another method is
clearly. by using Chemical Fixatives such as
ethanol, formaldehyde, and acetic acid to
6. CAREFULLY move the nosepiece so that you are denature and stabilize the cell structures. It
using the next objective with a slightly higher is commonly done in tissue samples.
magnification (usually a low power objective, LPO
which is 10x). o Staining is the method of coloring
certain cell structures by applying
7. Continue step 6 as needed. Once the specimen stains or dyes which are made of
has been fully viewed, take note of the structures positive/negative ions. Dyes are
seen by either drawing it or taking a picture. composed of a chromophore and a
counter ion, the former contains
8. Once you’re finished viewing, use the coarse the color, while the latter does not.
focus to gently lower the stage. BE CAREFUL in If the positive ion is the
which direction the stage is moving. Don’t let the chromophore, it is called a Basic
objective lens touch the slide. dye, and if it is the negative ion it is
an Acidic dye
o Dyes are selected based on how
SLIDE PREPARATION they react with the specimen. If the
• Microscopes are able to magnify cells; dye directly interacts with the
however, the structures within them are difficult specimen it is called a positive
to distinguish. Specimen slides are therefore stain, but if it reacts with the
prepared using different methods. environment or background it is
• These can be Wet mount, Fixation or Staining classified as a negative stain

o Wet mounts are the fastest and simplest STAINING TECHNIQUES


slides to prepare. The specimen (usually • Staining can be classified into different
suspended in liquid) is placed on the slide techniques based on the number of dyes used,
as a single drop, sealed with a coverslip, the structures it aims to highlight, and even
and is ready for examination. what type of microscope is going to be used
• Staining methods can be categorized into two
o Fixation refers to the adhesion of the (2): a simple stain or a differential stain.
specimen to the slide and killing
microorganisms to stop their movement o A simple stain colors all structures the
(while keeping the structures intact). This same and is used to emphasize certain
can be done by Heat fixation wherein thin structures. A differential stain

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distinguishes organisms or structures


based on their interaction of different
dyes.
o The table at the end shows a summary
of the common staining techniques
used in biology/microbiology

EXAMPLES OF MICROSCOPES
1. Compound Microscope 3. Scanning Electron Microscope (SEM)
Makes use of light to view sectioned Makes use of a stream of electrons to
specimen up to 2000x magnification study the 3-D surface of a specimen

Image 1.1 Micrograph of Onion Cells using Compound


Microscope
Source: [Link] lab- Image 1.3 Micrograph of Human Blood using SEM
[Link] Source: [Link] electron_microscope

2. Transmission Electron Microscope (TEM)


Makes use of a stream of electrons to 4. Stereomicroscope
study the internal structures of sectioned Makes use angled light to view 3-D
specimen structures of specimen

Image 1.2 Micrograph of Schwann Cells using TEM Image 1.4 Micrograph of A. Atkinsoni using a Stereo
Source: [Link]
Microscope
[Link]
Source: [Link]
of-A-Atkinsoni-taken-under-stereo-microscope

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TYPE NAME PURPOSE DYES OUTCOME


Basic stains Stains negatively charged Methylene blue Positive stain (color
molecules (i.e. nucleic Crystal violet depends on the dye)
acids, proteins) Malachite green
Basic fuchsin
Safranin
Simple Acidic stains Stains positively charged Eosin Positive or negative
molecules Acid fuchsin (depends on cell
Rose Bengal chemistry if it repels the
stain
Negative Stains the background, Indian ink Dark background with
stains not the specimen Nigrosine light specimen
Gram staining Distinguishes cells by cell Crystal violet Gram (+) becomes
wall composition (gram Gram’s iodine violet.
positive or gram negative) Ethanol Gram (-) becomes pink
Safranin
Acid-Fast Distinguishes acid-fast Basic fuchsin Acid-fast are red. Non-
staining cells (M. tuberculosis) Acid alcohol acid-fast are blue
from non-acid-fast cells Methylene blue
Endospore Used to distinguish and Malachite green Endospores are bluish
staining study the presence of (Schaeffer-Fulton green. Other structures
Differential endospores procedure) are pink
Safranin
Flagella View flagella that are Tannic acid/Potassium Visible flagella
staining present in bacteria alum (mordant)
Basic
fuchsin/pararosaline
Capsule Identify cells with capsules Indian ink/nigrosine Capsules are clear or
staining (negative stain) seen as halos
Methylene Blue
(counter stain)

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References

MRC Laboratory of Molecular Biology. (n.d.).


Laboratory of Molecular Biology, & The
Lister Institute of Preventive Medicine.
Retrieved December 29, 2018, from
[Link]

OpenStax College for Microbiology. (n.d.). Staining


Microscopic Specimens. Retrieved January
1, 2019, from
[Link]
crHU_vQ@4/Staining-Microscopic-
Specimens

Kalinga Institute of Industrial Technology. (n.d.).


Some Common Tools and Techniques
Used in Biology. Biology 1. Retrieved
December 10, 2018, from
[Link]/[Link].

VLab Amrita Education. (n.d.). Instructional


Materials. Retrieved December 29, 2018,
from
[Link]
im=323&cnt=1

DEFINITIONS BOX

Micrograph Positive stain


Magnification Negative stain
Resolution Acidic dye
Wet mount Basic dye
Fixatives

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Common questions

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The transmission electron microscope (TEM) offers the advantage of viewing internal structures of sectioned specimens in much greater detail, as it uses electron beams for higher resolution and magnification than light microscopes. However, TEMs require extensive sample preparation, including sectioning and staining with heavy metals, making them time-consuming and potentially altering the specimen. In contrast, compound microscopes are easier to use for routine observation and allow for viewing of live specimens but with significantly lower resolution and magnification .

Chromophores are the parts of dye molecules responsible for color, and their charge determines whether the dye functions as a basic or acidic stain. In basic dyes, the chromophore is a positively charged ion that binds to negatively charged structures like nucleic acids and proteins, resulting in a positive stain. In acidic dyes, the chromophore is a negatively charged ion that can interact with positively charged structures, or not penetrate the specimen and stain the background, resulting in a negative stain. The selection of stain based on chromophore charge is crucial for highlighting specific structures in microscopy .

Wet mount preparations are quick and simple, involving placing the specimen in a liquid with a coverslip, suitable for observing live cells and microorganisms. However, they often provide less contrast than fixed samples and may not preserve cellular structures well over time. Fixation, either by heat or chemical methods, adheres the specimen to the slide, preserves cellular anatomy, and kills microorganisms, facilitating better staining and long-term stability but at the cost of viewing dynamic processes in live cells .

The condenser and diaphragm of a compound microscope are essential for optimizing the quality of the observed image. The condenser focuses light onto the specimen, enhancing brightness, while the diaphragm regulates the amount of light that reaches the specimen, allowing the observer to adjust contrast to improve the resolution of different structures within the field of view. Proper use of these components can significantly enhance image clarity and detail .

Gram staining distinguishes bacteria by cell wall properties, classifying them as either Gram-positive, which appear violet, or Gram-negative, which appear pink due to differences in their cell wall structure and response to dyes like crystal violet and safranin. Acid-fast staining differentiates acid-fast cells, such as Mycobacterium tuberculosis, from non-acid-fast cells based on their retention of the primary dye, basic fuchsin, even after treatment with acid alcohol; acid-fast cells appear red, whereas non-acid-fast cells appear blue .

Negative stains function by coloring the background instead of the specimen, leaving the specimen itself unstained and visible as a light contrast against the dark background. This technique, using dyes like Indian ink or Nigrosine, is particularly useful for observing capsules surrounding certain bacteria, as it outlines structures without penetrating or altering the cells. Negative staining is applied in both light and electron microscopy for studying fine structures and outlining delicate features such as viral particles or bacterial capsules .

Differential staining techniques involve multiple dyes to distinguish different cellular components or types of organisms. For example, Gram staining uses crystal violet and safranin to differentiate between Gram-positive and Gram-negative bacteria based on cell wall composition, providing critical information for treatment decisions in microbiology. Such stained distinctions allow researchers to not only identify and classify microorganisms but also study their physiological and structural characteristics, aiding in diagnosis and scientific understanding .

A compound microscope consists mainly of an ocular lens and objective lenses. The ocular lens, found inside the eyepiece, presents the final magnified image and typically offers magnifications of 10x or 15x. Objective lenses, attached to the nosepiece, provide magnification levels ranging from 4x to 1000x, allowing detailed observation of the specimen. The condenser and diaphragm play a crucial role in regulating light for adjusting brightness and contrast when viewing the specimen .

A stereomicroscope uses angled light to provide a three-dimensional view of the specimen, making it ideal for examining larger, opaque objects like insects or plant parts. Unlike compound microscopes which view thin sections of biological samples using transmitted light, or electron microscopes that use electron beams for extremely high magnification and resolution required for viewing ultrastructures, stereomicroscopes excel at providing depth perception and are used for manipulating samples in real time .

Preparing slides using methods such as wet mounts, fixation, or staining is important because these techniques enhance the visibility and contrast of microscopic specimens. Wet mounts, although quick and simple, allow viewing with the least manipulation. Fixation stops microbial movement and preserves cellular structures. Staining, with methods like Gram or acid-fast staining, provides contrast to distinguish cellular components or organisms with certain characteristics that are otherwise difficult to see .

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