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DNA Extraction from Buccal Cells Guide

This document provides instructions for extracting DNA from human cheek cells. It describes how to collect cheek cells, lyse the cell membranes using a detergent-based lysis solution to release the DNA, and precipitate the DNA out of solution using salt and alcohol. DNA appears as white, stringy material that can be seen with the naked eye. The purpose of DNA extraction is to study genetics, develop diagnostics and drugs, perform forensics analysis, sequence genomes, and for other applications.
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0% found this document useful (0 votes)
22 views5 pages

DNA Extraction from Buccal Cells Guide

This document provides instructions for extracting DNA from human cheek cells. It describes how to collect cheek cells, lyse the cell membranes using a detergent-based lysis solution to release the DNA, and precipitate the DNA out of solution using salt and alcohol. DNA appears as white, stringy material that can be seen with the naked eye. The purpose of DNA extraction is to study genetics, develop diagnostics and drugs, perform forensics analysis, sequence genomes, and for other applications.
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd

Genetics Laboratory

Activity 4
DNA EXTRACTION

DEOXYRIBONUCLEIC ACID (DNA)


❑ Considered the hereditary “code of life” because it possesses the information that
determines an organism’s characteristic and is transmitted from one generation
to the next
❑ Your DNA is your “genetic fingerprint”—this means that your DNA is like no one
else in the world!
❑ DNA is used every day by scientists and lawyers to help in criminal
investigations, paternity cases, cloning, etc.

DNA STRUCTURE
❑ DNA is a nucleic acid, made of the elements carbon, hydrogen, oxygen, nitrogen,
and phosphorous.
❑ Watson and Crick were the two scientists that were credited
with the discovery of its structure.
❑ DNA is made up of several nucleotides.
❑ Each nucleotide consists of a sugar, a phosphate and a
nitrogenous base.
❑ As nucleotide chains are formed, the DNA takes the shape
of a twisted ladder
❑ DNA is in the nucleus of almost every cell in your body.
❑ The length of DNA per cell is about 100,000 times as long as the
cell itself.
❑ However, DNA only takes up about 10% of the cell’s volume.
❑ This is because DNA is specially packaged through a series of events to fit easily
in the cell’s nucleus.
❑ The structure of DNA, the double helix, is wrapped around
proteins, folded back onto itself, and coiled into a compact
chromosome.
❑ Individual chromosomes can be studied using
microscopes, but the double helix of a chromosome is so
thin that it can only be detected through innovative, high-
tech procedures.
❑ Chromosomal DNA from a single cell is not visible to the
naked eye.
❑ However, when chromosomal DNA is from multiple cells,
the amassed quantity can easily be seen and looks like
strands of mucous-like, translucent cotton.
Buccal Cells Provide An Excellent Source of DNA

Extracting Human DNA


1. Buccal (cheek cells) can be harvested painlessly and in sufficient quantity to
visualize DNA extracted in a simple 4-step protocol
2. Collect cheek cells by swishing water in your mouth and using to gently scrape
cells off our cheeks. (The more vigorous and the longer that you swish, the more
cells are removed, and the more materials you’ll have from which to extract
DNA.)
3. Lyse the cell membranes by adding a detergent based cell lysis solution, which
allows the DNA to be freed (digestion). DNA is soluble in water, but much less
soluble in alcohol.
4. Alcohol will be slowly added, and DNA will precipitate to the solution, and you
will be able to see your own DNA!
5. As white, stringy material is thousands of DNA molecules stuck together.
• Pipette 3 ml water into the drinking cup
• Gently chew the inside of mouth for 30
seconds
• Gently – blood doesn’t help
• Take the water from tube into mouth and
move it around for 30 seconds
• Don’t swallow the water
• Carefully spit the water back into the cup

• Add 2 ml of lysis buffer to the test tube for


DNA extraction
• Pour the contents of the cup into the test tube
• Put the cap on the tube
• Gently swirl the tube to mix
• Shaking cuts, the DNA leading to short strands
at the end of the experiment

Lysis Buffer
❑ For extraction of DNA the lysis buffer will commonly contain sodium dodecyl
sulfate (SDS) and sodium hydroxide (NaOH)
❑ Lysis buffers break the cell membrane by changing the pH.
❑ SDS solubilizes the cell membrane.
❑ NaOH helps to break down the membrane, and disrupts the hydrogen bonding
between the DNA bases, converting the double-stranded DNA to single-stranded
DNA.

Importance of Cell Lysis Buffer


❑ It lyses the nuclear membrane as well as a cell membrane.
❑ It maintains the pH during the DNA extraction.
❑ Lysis buffer maintains the integrity of the DNA (protect DNA from lysis)
❑ It separates DNA from other cell debris.
❑ It protects DNA from acidic degradation.
❑ General chemicals used in lysis buffer are Tris, EDTA, SDS, CTAB, Triton X100,
MgCl2, KCl, NaCl and other detergents.
• Add 0.25 ml of Proteinase K solution to the tube
• Put the cap on the tube
• Gently swirl the tube to mix
• Place the tube in the 56oC water bath for 10 minutes

• Add 0.5 ml of 0.5 M NaCl to the tube and swirl the


tube gently to mix
• Hold the tube at 45o and carefully pour in 10 ml of cold
isopropyl alcohol
• Leave the tube on the desk for 5 minutes
• It is very important not to shake the tube
• After 5 minutes DNA should have precipitated at the
interface between the lysis buffer and the alcohol
• Do not shake or invert the tube

DNA Precipitation
❑ Adding salt helps to neutralize the DNA charge
and make the molecule less hydrophilic, meaning
it becomes less soluble in water.
❑ The salt also helps to remove proteins that are
bound to the DNA and to keep the proteins
dissolved in the water.
❑ The high concentration of salt causes the
proteins to fall out of solution, and then
centrifugation separates the soluble nucleic acid
from the cell debris and precipitated protein
What is the purpose of DNA extraction?
❑ The ability to extract DNA is of primary importance to studying the genetic
causes of disease and for the development of diagnostics and drugs.
❑ It is also essential for carrying out forensic science, sequencing genomes,
detecting bacteria and viruses in the environment and for determining paternity.

Laboratory Activity 4 – DNA Extraction


• Schematic Diagram of the DNA Extraction from Human Cheek Cells.
• Answer the guide questions.

Common questions

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Alcohol, such as isopropyl alcohol, is used in DNA extraction because it causes DNA to precipitate out of the aqueous solution. DNA is less soluble in alcohol, especially when in the presence of salt, which neutralizes its charge. Upon adding alcohol, DNA becomes visible as a white, stringy substance as thousands of DNA molecules aggregate. This physical change allows for the collection and visualization of DNA, facilitating further analysis .

Watson and Crick's discovery of the DNA double helix structure significantly impacted modern genetic research by providing a clear model for understanding genetic encoding and replication. This discovery laid the foundation for molecular biology, enabling advances in genetic engineering, forensic science, medical diagnostics, and biotechnology. Understanding DNA's structure has allowed for the development of technologies such as PCR and DNA sequencing, which are pivotal in research, medicine, and forensic applications .

The DNA extraction from buccal cells involves several key steps to ensure DNA isolation without degradation. First, cheek cells are collected and lysed using a lysis buffer containing sodium dodecyl sulfate (SDS) and sodium hydroxide (NaOH) to break cell membranes and denature proteins. NaOH also helps to disrupt hydrogen bonds in the DNA bases. Proteinase K is added to further digest proteins, and a salt solution helps to stabilize DNA and facilitate protein removal. Cold isopropyl alcohol is then used to precipitate the DNA, while maintaining the solution's integrity without shaking to avoid DNA shearing .

The lysis buffer plays a critical role in DNA extraction by breaking down cell membranes and maintaining the integrity of the extracted DNA. It contains detergents like SDS to solubilize cell membranes and NaOH to adjust the pH, ensuring DNA remains stable and protected from degradation. The buffer separates DNA from other cellular debris and maintains a suitable environment by stabilizing pH and preventing acidic degradation of the DNA .

Detergent-based lysis solutions, such as those containing SDS, enhance the effectiveness of DNA extraction by solubilizing cellular and nuclear membranes, thus liberating DNA from cell structures. The detergent disrupts lipid bilayers and denatures membrane proteins, facilitating the selective extraction of DNA while separating it from other cellular debris. By altering the membrane integrity and maintaining a suitable pH environment, these solutions ensure high yields of pure DNA, crucial for further analysis and applications .

The use of buccal cells for DNA extraction provides several benefits, including non-invasive collection and sufficient DNA yield for many analyses. This method is relatively simple and does not require specialized equipment. However, limitations include the potential for contamination, variable DNA quality depending on personal factors (e.g., oral hygiene, recent eating), and the need for careful handling to prevent cell and DNA degradation. Despite these limitations, buccal cell collection is an effective and convenient option for many DNA analysis applications .

A nucleotide, the basic building block of DNA, consists of three key components: a sugar (deoxyribose in DNA), a phosphate group, and a nitrogenous base. These components contribute to DNA's structure by forming long chains, where the sugar and phosphate create the backbone, connected by phosphodiester bonds. The nitrogenous bases (adenine, thymine, cytosine, and guanine) pair specifically (A with T, and C with G) via hydrogen bonds, giving DNA its ladder-like structure, which twists to form the double helix .

DNA extraction techniques profoundly impact forensic science and diagnostics by providing essential tools for identifying individuals, determining paternity, and diagnosing diseases. In forensics, DNA extraction from crime scene evidence enables the creation of DNA profiles for suspect identification. In diagnostics, extracted DNA aids in detecting genetic diseases and developing personalized medicine approaches. The ability to extract and analyze DNA is crucial for advancing research and application in these fields, allowing for improved accuracy in legal and medical settings .

Changes in pH during DNA extraction play a crucial role in the denaturation and stability of nucleic acids. A highly basic environment, often provided by NaOH in the lysis buffer, disrupts the hydrogen bonds between bases, converting double-stranded DNA into single strands. This facilitates cell lysis and the separation of DNA from proteins and other cellular debris. Maintaining an appropriate pH is essential to prevent DNA degradation and ensure a stable environment for DNA extraction and preservation .

The packaging of chromosomal DNA is crucial for its function within the cell, as it allows the long DNA molecules to fit within the limited space of the cell nucleus. DNA is wound around histone proteins, forming nucleosomes, and further folded into higher-order structures. This compact structure not only permits efficient storage but also regulates gene expression and protects DNA from physical and chemical damage. Efficient packaging supports proper segregation during cell division and ensures accessibility for transcription and repair processes .

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