ABCAM Multiplex-Guide
ABCAM Multiplex-Guide
to multiplex assays in
drug discovery
Everything you need to know when choosing a suitable
multiplex immunoassay for your drug discovery program
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Contents
Introduction. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
References. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
This guide aims to highlight the value of multiplexing in drug discovery and assist in
choosing the most suitable multiplex immunoassay for your drug discovery program.
The first chapters discuss the advantages of multiplexing and its value for drug discovery.
The following chapters highlight the key factors to consider when choosing a multiplex
assay and provide a comprehensive overview of various multiplex assay techniques
used in screening.
The demand for safe and efficacious drugs is steadily growing, increasing the need for
fast, efficient immunoassays for drug discovery and development. The drug discovery
process often starts with lead optimization using high-throughput screening (HTS) to
narrow down huge compound libraries to a few promising candidates. HTS requires
scalable, high-quality immunoassays to identify the candidates quickly, efficiently, and
with minimal costs.
Single analyte immunoassays, such as ELISA, were historically used and are still invaluable
in early discovery and measuring therapeutic responses in clinical trials. However, they
are inefficient in terms of cost, labor, time, and sample volume required when measuring
more than one target protein in HTS. Multiplex immunoassays address those challenges
by studying several targets in a single well using minimal amounts of sample and
exponentially increasing the number of data points collected in HTS.
Tackling more complex conditions such as cancer and autoimmune disease using
increasingly advanced techniques has led to more demand for multiple analyte
analyses. For this reason, multiplex assays have become a necessary part of drug
discovery as they help identify valid drug candidates earlier in the screening process.
Multiplexing achieves this by generating more biologically relevant data from limited
sample volume, as various plausible targets are monitored in a single well, eliminating
the need for separate sample/control for each target and reducing the coefficient of
variability in downstream analysis. Furthermore, multiplex assays can simultaneously look
at a target, downstream events, and parallel pathways, thus helping us better identify
the participating pathways and players, leading to better drug efficacy. This way,
screening can effectively eliminate toxic/ineffective compounds early in the discovery
pipeline, decreasing later-stage failures and avoiding costly mistakes1-3.
Excellent batch-to-batch
Excellent batch-to-batch
consistency
consistency
mL Low pg/mL
mL High sensitivity Low pg/mL
ection High sensitivity Limit of Detection
ection Limit of Detection
Assay format:
Automation friendly
Automation friendly
Figure 1. The main factors to consider when choosing a multiplex assay for use in drug discovery.
In recent years, automation has revolutionized how the drug discovery pipeline works
by streamlining certain decision-making processes4. As screening libraries contain
thousands of candidate molecules, multiple compounds need to be screened in a
single assay. To make this possible, automation has been implemented in compound
management, HTS and hit-to-lead generation in the last 20-30 years. Since some
screening processes are repetitive, monotonous, time-consuming, and prone to error,
automation has increased time savings while reducing errors and costs.
In the last ten years, the emergence of robotics, from cherry-picking the compounds to
carrying out routine procedures and assays, has transformed the pipeline process. For
instance, the use of liquid handlers for dispensing compounds and performing workflows
has reduced processing time, decreased the possibility of sample contamination, and
increased the efficiency of volume transfers. Advances in automation have encouraged
a transition to using smaller volumes of reagents and compounds, with experiments
being performed in microtiter plates of high density, usually in a 96-, 384, or 1536-plate
format. This process called assay miniaturization has dramatically improved the screening
processes by generating large data sets quickly and efficiently while reducing reagent
consumption and space5. Therefore, automation and assay miniaturization have
facilitated better-informed decisions and ultimately decreased costs in screening4.
When performing any HTS study, multiplexing while screening large numbers of
samples in a single assay is essential to help identify a few promising lead compounds
in a timely and cost-effective manner. Any screening study would benefit from an
automation-friendly assay because using liquid handlers/dispensers and robotics
will streamline the process, reducing errors in repetitive assays and making screening
thousands of compounds smoother and easier.
One of the automation challenges in a multiplex immunoassay is the need for multiple
wash steps during assay preparation. Although wash steps reduce the background,
increasing the signal-to-noise ratio and thereby sensitivity, they slow down the process
and introduce wash step-related errors. In contrast, a no-wash assay decreases the
number of steps between reagent handling and final data collection. Transitioning to a
non-wash assay workflow simplifies assay setup and automation implementation, which
would reduce potential errors and speed up the scale-up during HTS.
Multiplex immunoassays are divided into two main categories: planar and suspension. Here
we describe the key principles, benefits and limitations of planar and suspension assays and
review the most common examples of multiplex immunoassays in both categories.
H
1 2 3 4 5 6 7 8 9 10 11 12
Planar Suspension
B
Capture
A C
Y
A B C D
X D
Sample binding
A C
Y
A B C D
X D
Z
A
B
Detection Y
C
D
X
Figure 2. Planar and suspension assay formats. In planar assays, capture ligands are immobilized on a rigid
two-dimensional support and probed with a sample. X and Y coordinates are the fixed positions (solid phase)
for the binding to occur, with the Z axis resolving the fluorescent or chemiluminescent signal. In suspension
assays, capture ligands are immobilized on color- or size-coded microspheres. Suspension assays are
distinguished by coding attributes, and flow cytometry is used to detect assay-specific fluorescent signal.
Benefits
– Flexible assay content
Limitations
– Chemical modification to biological capture agents
– Complex instrumentation
– Average sample volume required ~10-12.5 μL
The suspension assay workflow may include multiple wash steps for sensitivity and
dynamic range (eg, Luminex®) or have a no-wash format (eg, AlphaLISA®). Depending
on assay type, multiplex suspension assays can be read on a standard flow cytometer
(FirePlex®-96) or require specialized equipment (Luminex®, AlphaLISA®).
– Bead arrays represent a type of multiplex suspension assay that allows simultaneous
measurement of multiple analytes using beads containing different concentrations
of fluorescent dye. The beads are usually analyzed using standard flow cytometer
techniques. The workflow of such assays typically involves multiple wash steps to
improve sensitivity and dynamic range.
– Abcam FirePlex®-384 and 1536 immunoassays use the same particle technology
as FirePlex-96® but employ static high content imaging to deconvolute stationary
particle codes and analyte-specific detector fluorescence at the bottom of a 384-
or 1536-plate well. These assays are compatible with high throughput workflows
and instrumentation and can be read with various high content imagers.
Benefits
– Very high-density multiplexing
– Capture agents can be affixed without chemical modification
– Archivable source data
– RayBio® antibody array platform has different antibody array options depending
on the studied protein activity and the assay readout.
– Quantibody® array quantitatively measures proteins using a fluorescent readout.
– C-Series arrays assess relative protein expression patterns across different sample
types and experimental conditions by chemiluminescence.
– L-Series array allows screening of many proteins per assay for target identification
using chemiluminescence or fluorescence.
Technical
Multiplex Planar Multiplex Suspension
requirements
Plate- FlexMap
CDI Bead Luminex® FirePlex®- FirePlex®- FirePlex®- MagPix® Alpha-
based RayBio® 3D®
HuProt™ Arrays 100/200 96 384 1536 (Luminex®) LISA®
ECL (Luminex )
®
Specific
Yes No No No Yes Yes No No No Yes Yes
iInstrument
Sample
10 µL <10 µL <10 µL <10 µL 25 µL 12.5 µL 12.5 µL 6.25 µL 2.5 µL 12.5 µL 10 µL
volume
Plate type
96-well 96-Well 2-Well 384-well 96-well 384-well 96-well 384-well 1536-well 96-well 1536-well
(max wells)
Workflow Wash Wash Wash Wash Wash Wash Wash No-Wash No-Wash Wash No-Wash
Low to
Throughput High High High Low Medium low High High Low High
medium
Plate re-read
No Yes Yes Yes No No Yes Yes Yes No No
possible
Abcam FirePlex immunoassays have been designed to overcome the common challenges
in biomarker and drug screening studies. The FirePlex particle technology (Figure 3)
provides multiplex assays with high plex, sensitivity, and high-throughput capabilities.
A B C
Analyte
Code
Analyte
Quantity
D
Figure 3. FirePlex particle technology and its readout on a high content imager. A. Varying intensities of green
Field
and of View
yellow fluorescent dyes are Detection
used for particleColor
identityChannel Excitation
barcoding; yellow Emission
dye, which is co-locally separate
on the particle from the barcoding region, is used for analyte quantitation. B. Two images are captured per
well,
Entirewith approximately
single well area 20 particles
16-Bit analyzed per analyte using the FirePlex
Green Analysis
440-500 nmWorkbench500-535
[Link]
C.
Representative graph demonstrates analyte fluorescent intensity levels automatically output from scanned
of 384-well
wells plate
along with analyte CMOS
atstandard curves.
4X objective Camera Yellow 440-500 nm 570-630 nm
We offer FirePlex assays for multiplex proteins (FirePlex immunoassays) or miRNA (FirePlex
miRNA assays) analysis, including:
FirePlex-96 immunoassays are fully customizable and highly sensitive multiplex panels
enabling analysis of up to 70 analytes per well in a 96-well plate on standard flow
cytometers. These immunoassays enable comprehensive biomarker profiling directly
from biofluids.
FirePlex-384 FirePlex-1536
Multiplex capabilities 10 analytes/well 5 analytes/well
Assay format 384-well plate 1536-well plate
Data points per plate 3,840 7,680
Simple, no-wash workflow two-step one-step
Automated workflow with a < 20 min scan per plate <1 hour scan per plate
readout on high-content imagers
By providing a new, more effective biomarker analysis workflow (Figure 4, 5), FirePlex
immunoassays enable data-driven R&D to guide the most effective strategies and
minimize the risk of late-stage failures.
1 Mix particles, detection antibodies, Image particles on Data analysis with FirePlex®
and 6.25 µL of sample high content imager Analysis Workbench software
2 Add samples and incubate overnight
3 Add imaging dye & image the plate
Shake for
5 min
Add
Shaker orbit imaging Collect
< 2mm dye data
Figure 5. An assay workflow of FirePlex-1536, the first 1536-well assay that enables up to 5-plex.
How can Abcam help you choose the right multiplex immunoassay
for your workflow?
FirePlex immunoassays are available in three different formats to provide the flexibility to
build an assay that best meets your needs.
– Select analytes of interest from existing panels with Mix and Match assay designer
Affiliations
Summary
– Induced pluripotent stem cells (iPSCs) were utilized to produce a new cell line
with a macrophage-like phenotype.
– FirePlex-384 was used to profile the cytokines secreted from the newly
developed cell line to confirm its resemblance to macrophages.
60000
30000
20000
15000
10000
pg/ml
5000
600
400
200
0
IL-8 MCP1 IL-6 TNFA IL10 IL1B INFG
Key: Spinner Spinner+LPS Harvest Harvets+LPS
– The approach used in this study can be helpful to any researchers who need to
make detailed characterization and multi-phenotypic profile of any cell type
that they isolate, generate, or engineer.
4. Schneider, G. Automating Drug Discovery. Nat Rev Drug Discov. 17, 97-113. (2018).
Luminex®, Luminex® 100™, Luminex® 200™, MAGPIX®, FLEXMAP 3D® are trademarks
of Luminex Corporation, registered in the U.S. and other countries.