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Antibiotics Inhibiting Protein Synthesis

The document is about antibiotics that inhibit protein synthesis from the Biochemistry department at Helwan University in Egypt. It was supervised by Dr. Dalia Ali and written by Abdelrahman Khaled Fouad. It discusses how certain antibiotics like erythromycin and lincomycin work by stimulating the premature dissociation of peptidyl-tRNA from the ribosome during protein synthesis, rather than blocking other steps in the process. It also describes experiments showing these antibiotics can help reduce errors in protein synthesis by preferentially causing the dissociation of erroneous peptidyl-tRNAs.
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0% found this document useful (0 votes)
45 views4 pages

Antibiotics Inhibiting Protein Synthesis

The document is about antibiotics that inhibit protein synthesis from the Biochemistry department at Helwan University in Egypt. It was supervised by Dr. Dalia Ali and written by Abdelrahman Khaled Fouad. It discusses how certain antibiotics like erythromycin and lincomycin work by stimulating the premature dissociation of peptidyl-tRNA from the ribosome during protein synthesis, rather than blocking other steps in the process. It also describes experiments showing these antibiotics can help reduce errors in protein synthesis by preferentially causing the dissociation of erroneous peptidyl-tRNAs.
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as DOCX, PDF, TXT or read online on Scribd

Biochemistry department

Faculty of medicine

Helwan university

Antibiotics that inhibit protein synthesis


Supervised by / [Link] Ali
By- Abdelrahman Khaled Fouad
Introduction:

A protein synthesis inhibitor: is a substance that stops or slows the growth or


proliferation of cells by disrupting the processes that lead directly to the generation
of new proteins.[1]
While a broad interpretation of this definition could be used to describe nearly
any antibiotic, in practice, it usually refers to substances that act at
the ribosome level (either the ribosome itself or the translation factor),taking
advantages of the major differences between prokaryotic and eukaryotic ribosome
structures.

Mechanism:

During protein synthesis on the ribosome, the growing peptide is linked covalently to a transfer
RNA.

With a certain probability this peptidyl-tRNA dissociates from the ribosome, whereupon it
becomes susceptible to hydrolysis catalyzed by peptidyl-tRNA hydrolase.

When placed at nonpermissive temperatures, mutant (pthts) Escherichia coli that are temperature-
sensitive for the hydrolase will accumulate peptidyl-tRNA, suffer inhibition of protein synthesis,
and eventually die.

Treating cells with chloramphenicol before raising the temperature prevents cell death but
erythromycin, other macrolides, and lincosamide antibiotics all enhance cell death. Accumulation
of peptidyl-tRNA by pthts cells at high temperatures is blocked by chloramphenicol but enhanced
by macrolides and lincosamides. The data are most consistent with macrolide and lincosamide
antibiotics having as their primary mechanism of inhibition the stimulation of peptidyl-tRNA
dissociation from the ribosome.

Rather than blocking peptide bond formation or peptidyl-tRNA translocation from the A- to the P-
site of the ribosome, these antibiotics allow the synthesis of small peptides which dissociate as
peptidyl-tRNAs before being completed.

Low doses of erythromycin and lincomycin stimulate preferentially the dissociation of peptidyl-
tRNAs that are erroneous. Errors in proteins can be assessed by the time necessary to inactivate
beta-galactosidase at > 55 degrees C.
Whether erroneous peptidyl-tRNAs are induced by treating E. coli with streptomycin or ethanol,
or by starving for an amino acid, the shortened time to inactivate beta-galactosidase is counteracted
if the cells are simultaneously treated with erythromycin or lincomycin.

In contrast, errors in beta-galactosidase caused by synthesis in the presence of canavanine, an


arginine analogue, cannot be counteracted by the simultaneous presence of erythromycin.

This result rules out any effect of the drug on post-translational mechanisms of error correction.
References:

1st paragraph : "Definition: protein synthesis inhibitor from Online Medical Dictionary"

2nd paragraph: [Link]


Diagram : [Link]

Common questions

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Low doses of erythromycin and lincomycin stimulate the dissociation of erroneous peptidyl-tRNAs. This specific action suggests that these antibiotics may play a role in reducing the synthesis of malfunctioning proteins, diminishing bacterial resistance or fitness by eliminating the erroneous polypeptides before they contribute to cellular functions .

Peptidyl-tRNA hydrolase in E. coli catalyzes the hydrolysis of peptidyl-tRNA that dissociates from the ribosome during protein synthesis. If the enzyme is dysfunctional, as in mutant pthts E. coli at nonpermissive temperatures, the accumulation of peptidyl-tRNA inhibits protein synthesis, leading to cell death. This accumulation suggests that continuous protein synthesis is essential for cell survival and growth .

Macrolides and lincosamides enhance the dissociation of peptidyl-tRNA from the ribosome, increasing the incidence of incomplete peptides during protein synthesis. This mechanism suggests a primary mode of action that interrupts protein elongation leading to the accumulation of erroneous proteins or nonfunctional peptides, undermining bacterial viability .

Erythromycin, while managing translational errors by promoting erroneous peptidyl-tRNA dissociation, cannot counteract post-translational errors induced by canavanine, an arginine analogue. Canavanine enhances errors in protein folding and function at a post-translational level which erythromycin does not address, highlighting its specificity to translational mechanisms .

Protein synthesis inhibitors typically target the differences in ribosome structure between prokaryotic and eukaryotic cells. Prokaryotic ribosomes have a distinct structure which allows these inhibitors to specifically bind and interfere with protein synthesis processes unique to prokaryotes, minimizing effects on eukaryotic ribosomes and thus reducing toxicity in human cells .

Chloramphenicol prevents cell death in temperature-sensitive E. coli by blocking the accumulation of peptidyl-tRNA, stabilizing the ribosomal complex, and thus allowing protein synthesis to continue. On the other hand, erythromycin enhances cell death by promoting the dissociation of peptidyl-tRNA from the ribosome, leading to impaired protein synthesis and increased cell mortality .

Chloramphenicol is primarily effective at inhibiting the peptidyltransferase activity associated with the 50S ribosomal subunit of bacteria, thereby inhibiting protein elongation. It does not affect post-translational modification processes as its primary target is the translation stage of protein synthesis, rather than modifications occurring after a polypeptide chain has been synthesized .

The study of erroneous peptidyl-tRNAs provides insight into how some antibiotics can selectively hinder bacterial protein synthesis by facilitating the dissociation of incomplete or incorrect polypeptides. This not only decreases bacterial fitness by disrupting cellular processes dependent on functional proteins but also accentuates the antibiotics' potential to reduce translational fidelity, providing a selective advantage in addressing bacterial infections .

Temperature-sensitive E. coli mutants serve as a model to study the dynamics of peptidyl-tRNA and the effect of different antibiotics on protein synthesis. By observing the specific blocking or enhancement of peptidyl-tRNA accumulation at nonpermissive temperatures, researchers can gain insights into the distinct mechanisms of antibiotics such as chloramphenicol and erythromycin, further elucidating their roles in preventing or exacerbating cellular stress and death .

Erythromycin preferentially stimulates the dissociation of erroneous peptidyl-tRNAs, thereby reducing the incorporation of these errors into proteins. When E. coli cells are stressed by amino acid starvation, erythromycin reduces the shortened time to inactivate beta-galactosidase, demonstrating its ability to preferentially clear erroneous substrates and thereby indirectly maintain a higher level of protein integrity .

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