Module 5 Bio
Module 5 Bio
Syllabus
Muscular and Skeletal Systems as scaffolds, scaffolds and tissue engineering,
Bioprinting techniques and materials. Electrical tongue and electrical nose in food science,
DNA origami and Biocomputing, Bioimaging and Artificial Intelligence for disease diagnosis.
BIOMOLECULES
Bioconcrete. Bioremediation. Biomining.
Introduction:
Bioengineering is a discipline that applies engineering principles of design & analysis to biological
systems & biomedical technologies.
Examples of bioengineering research include bacteria engineered to produce chemicals, new
medical imaging technology, portable disease diagnostic devices, & tissue engineered organs.
Examples of bioengineering research include bacteria engineered to produce chemicals, new
medical imaging technology, portable and rapid disease diagnostic devices, prosthetics,
biopharmaceuticals, and tissue-engineered organs. Bioengineering overlaps substantially with
biotechnology and the biomedical sciences in a way analogous to how various other forms of
engineering and technology relate to various other sciences (such as aerospace engineering and
other space technology to kinetics and astrophysics).
In general, biological engineers attempt to either mimic biological systems to create products, or
to modify and control biological systems. Working with doctors, clinicians, and researchers,
bioengineers use traditional engineering principles and techniques to address biological processes,
including ways to replace, augment, sustain, or predict chemical and mechanical processes.
Branches of bioengineering may be categorized as:
Tissue engineering, Transdermal patches, Wearable devices, Robotic surgeons and Rehabilitation,
Nanorobots, Virtual reality, Microbubbles, Organ-on-a-chip, Mini bioreactors, gene editing.
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Applications of bioprinting: -
Drug development:
Many of today’s studies rely on living subjects – an inconvenient and expensive method for both
academic and commercial organizations. Bioprinted tissues can be used instead during the early
stages, providing a more ethical and cost-effective solution. Using bioprinted tissue can help
researchers determine a drug candidate’s efficacy sooner, enabling them to save money and time.
Artificial organs:
The organ donation list is so long that patients wait years before getting the help they need. Being
able to bioprint organs could help clinicians keep up with patients or eliminate the list entirely.
While this solution is far down the line, it is one of the most impactful possibilities in the field.
Wound healing:
A lot of tissue-specific bioinks are available today, enabling researchers to work with artificial skin
cells, neurons, hepatocytes and more. One day, clinicians could use these models for therapeutic
procedures like skin grafts, bone bandages for combat wounds or even plastic surgery.
Types of bioprinting techniques: Bioprinting techniques can be broadly classified into 5 types as
follows.
1. Inkjet bioprinters.
2. Extrusion based bioprinters.
3. Laser-based bioprinters.
4. Stereolithography based bioprinter.
5. Microvalve bioprinters.
Inkjet bioprinters: - It is a form of droplet-based bioprinting, in which the bioink is dropped on
the stage in small portions. This working principle is the same as in some ink cartridge office
printers, and those can be easily modified for bioprinting.
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Principle of inkjet bioprinters:
✓ Inkjet bioprinting is based on the ejection of drops of liquid onto a substrate by thermal or
acoustic forces.
✓ Thermal inkjet bioprinting can be achieved by electrically heating the print head to
generate pressure that causes the release of droplets from the nozzle.
✓ In the case of acoustic inkjet bioprinting, a piezoelectric crystal is used that creates an
acoustic wave inside the print head to break the liquid into droplets.
✓ When a voltage is applied to a piezoelectric substance, a rapid change in shape is induced.
This, in turn, generates pressure required to force droplets out of the nozzle.
✓ Both of these methods have their own advantages and disadvantages; thus, the selection of
inkjet bioprinting technology should be made based on the desired purpose.
Extrusion based bioprinters: - In this, the bioink is extruded through a nozzle tip by pressure. The
bioink extrudes as a continuous filament and is printed layer-by-layer on top of a substrate placed
on the stage.
Principle of extrusion based bioprinters:
✓ The extrusion-based 3D bioprinting utilizes one of the two mechanisms to produce the
desired result; the semi-solid extrusion (SSE) and the fused deposition modeling (FDM)
based 3D printing.
✓ In the SSE based 3D bioprinting, pressurized air or rotating screw gear is used to extrude a
continuous stream of semi-solid materials through a nozzle which is deposited in a layer-
by-layer fashion to form a 3D structure.
✓ The FDM 3D bioprinting, however, utilizes high temperature to melt thermoplastic
filaments which are then extruded through a nozzle to deposit in a layer-by-layer fashion to
produce a 3D structure.
✓ The two principal components of all extrusion-based 3D printers include the extrusion
system and the positioning system; thus, both of these systems should be accurate enough
to produce a visually and geometrically accurate structure.
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Laser based bioprinters: In this, the bioink is stored in a donor slide. On top of the donor slide and
in direct contact with it is an energy absorbing layer. When a strictly controlled laser is pulsated
into the absorbing layer, the shockwave from the laser separates a droplet of bioink from the donor
slide. The droplet then falls to the collector slide due to gravity.
Principle of laser based bioprinters:
✓ The principle of laser-assisted bioprinting is the use of the laser to induce forward transfer
of biomaterials onto a solid surface.
✓ The laser present on the printer irradiates the ribbon, which causes the liquid biomaterial to
evaporate and reach the receiving substrate in droplet form.
✓ The receiving substrate consists of biopolymers or a cell culture medium which assists
cellular adhesion and sustained growth of the biomaterial.
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Stereolithography based bioprinter: The stereolithography technique has the highest fabrication
accuracy, and a large number of materials can be used in the process. The technique utilizes light-
sensitive hydrogels that are deposited in a layer-by-layer fashion to form a 3D structure. The speed
of this method is very fast (about 40,000 mm/s) with cell viability of more than 90%.
Principle of stereolithography based bioprinters:
✓ Stereolithography technology is based on the solidification of the liquid photosensitive
polymer upon illumination.
✓ The technology utilizes digital micromirror arrays to control the light intensity to
polymerize light-sensitive polymer materials.
✓ The photochemical solidification of biopolymers results in the formation of layers that
together form a 3D object.
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Electronic tongue (E- tongue) in food science: Electronic tongue, also known as E-tongue, is an
analytical instrument that mimics the human tongue's sense of taste and is used in food science to
analyze the taste and flavor of different food products.
Working and components of E-tongue:
1. Sensor Array: The tongues sensor array is the heart of the instrument consisting of several
sensors that are sensitive to specific taste related chemicals such as salt, some sweetness
bitterness. Each sensor is designed to respond to a particular chemical or group of chemicals
and together they can provide a comprehensive profile of the use and flavorof a food
sample
2. Sample Holder: The sample holder is the part of the tongue that holds the food sample
during testing. It is typically made of a material that is inert and does not interact with the
food sample, such as glass or plastic.
3. Signal Processor: The tongue's signal processor is responsible for analyzing the electrical
signals generated by the sensor array in response to the food sample. It converts these signals
into a profile of the taste and Savor of the simple, which can be displayed on a computer
screen or other output device.
4. Data Analysis Software: The tongue's data analysis software is used to interpret the data
generated by the signal processor and create a profile of the taste and flavor of the food
sample. This software can be customized to suit the specific needs of a particular application
or industry,
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5. Calibration Solutions: To ensure accurate and reliable results, E-tongue, require regular
calibration using standardized solutions with known taste and flavor characteristics.
Electronic tongue (E- nose) in food science: An electronic nose, also known as an E-nose, is an
analytical instrument that mimics the human sense of smell and is used to identify and analyze the
aroma or odor of different substances. The e-nose consists of a sensor array that is capable of
detecting and quantifying different volatile organic compounds (VOCs) based on their chemical
composition.
Working and components of E-nose: The E-nose is an analytical instrument that works by
detecting and analyzing the volatile organic compounds (VOCs) present in a sample.
1. Sensor Array: The e-nose's sensor array is composed of several sensors that are sensitive
to specific VOCs. Each sensor is designed to respond to a particular chemical or group of
chemicals, and together they can provide a comprehensive profile of the aroma. or odor of
a sample.
2. Sample Delivery System: The sample delivery system is used to introduce the sample into
the e-nose. Depending on the type of sample, the delivery system can vary, but it typically
involves exposing the sample to the sensor array through an inlet port.
3. Signal Processing System: The e-nose's signal processing system is responsible for
analyzing the electrical signals generated by the sensor array in response to the sample.
The system converts these signals into a profile of the aroma or odor of the sample, which
can be displayed on a computer screen or other output device.
4. Data Analysis Software: The e-nose's data analysis software is used to interpret the data
generated by the signal processing system and create a profile of the aroma or odor of the
sample. This software can be customized to suit the specific needs of a particular application
or industry.
5. Calibration Solutions: To ensure accurate and reliable results, e-noses require regular
calibration using standardized solutions with known aroma or odor characteristics.
Calibration solutions can be used to verify the performance of the instrument and ensure that
it is operating within the desired range of accuracy and precision.
DNA ORIGAMI
DNA Origami is a technique in nanotechnology that involves folding DNA molecules into
specific shapes.
The process involves using a long, single strand of DNA, called the scaffold, to guide the folding
of short, complementary DNA strands, called staples, into a desired shape.
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The first DNA origami structures were developed in the mid-2000s and since then, the technique
has been widely used in a variety of applications, including the creation of nanoscale structures, the
study of molecular interactions, and the development of new drug delivery systems.
BIO-COMPUTING
• Bio-computing refers to the use of biological systems, such as cells, enzymes, and DNA, for
computing and information processing.
• This field combines the principles of computer science, biology, and engineering to create
novel systems for computing and data storage.
Technological Importance
1. Computational power: Bio-computing systems have the potential to provide new levels
of computational power, as they can perform complex tasks and calculations using
biological processes.
2. Data storage: Bio-computing systems can be used to store and process large amounts of
data, as DNA has a high information density [consider that a single gram of DNA can
theoretically store up to 215 petabytes (1 petabyte = 1 million gigabytes) of data] and can
be easily synthesized and amplified.
3. Medical applications: Bio-computing systems can be used to develop new diagnostic and
therapeutic approaches in medicine, such as biosensors and gene therapies.
4. Environmental monitoring: Bio-computing systems can be used to monitor and track
environmental conditions, such as air and water quality, in real-time.
5. Energy efficiency: Bio-computing systems are energy-efficient, which is becoming
increasingly important as we face the challenge of climate change and the need to reduce
our energy consumption.
6. Robustness: Bio-computing systems are highly robust, as they are less susceptible to errors
and failures compared to traditional electronic systems.
7. Versatility: Bio-computing systems can be programmed and reprogrammed to perform
different tasks, which makes them highly versatile and adaptable.
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BIO-IMAGING FOR DISEASE DIAGNOSIS
Bio-imaging is the use of imaging technologies to visualize biological processes and
structures in living organisms.
It plays a crucial role in disease diagnosis by providing detailed images of the body's
internal structures and functions, and can help healthcare professionals to identify and
diagnose a wide range of diseases and conditions.
Examples of Bioimaging Techniques Some examples of bioimaging techniques used for
disease diagnosis include X-rays, CT scans, MRI, PET scans, ultrasound, and optical
imaging.
These technologies can be used to visualize a wide range of structures and functions,
including bones, tissues, organs, blood vessels, and more.
Technological Importance
The technological importance of bio-imaging for disease diagnosis lies in its ability to
provide detailed images of the body's internal structures and functions, which can help
healthcare professionals to make accurate diagnoses and provide effective treatments.
1. Improved accuracy: Bio-imaging technologies can provide high-resolution images of the
body's internal structures, which can help healthcare professionals to identify subtle changes
and make accurate diagnoses.
2. Early detection: Bio-imaging can be used to detect diseases in their early stages, when they
are often more treatable. This can lead to earlier treatment and better outcomes for patients
3. Multi-modality: Bio-imaging technologies can be combined to provide a multi-modal view
of the body's internal structures and functions, which can provide a more comprehensive
understanding of a disease or condition.
4. Cost-effectiveness: Many bio-imaging technologies are relatively low-cost, which makes
them accessible to a wider range of patients.
5. Minimally invasive: Many bio-imaging techniques are non-invasive, which means that they
do not require incisions or the insertion of instruments into the body. This makesthem
less painful and less risky than many traditional diagnostic procedures.
6. Improved patient outcomes: By providing healthcare professionals with detailed images
of the body's internal structures and functions, bio-imaging can help to improve patient
outcomes by enabling earlier and more accurate diagnoses, and more effective treatments.
7. Advancements in research: Bio-imaging technologies are also important in advancing
medical research, by providing detailed images of the body's internal structures and
functions, which can help researchers to better understand the underlying mechanisms of
diseases and develop new treatments.
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Diagnosis: AI algorithms can be used to diagnose diseases by evaluating symptoms, test
results, and other patient information. AI algorithms can help healthcare professionals make
faster and more accurate diagnoses, reducing the risk of misdiagnosis.
Personalized medicine: AI algorithms can be used to create personalized treatment plans
for patients based on their specific medical histories, lifestyles, and other factors. For
example, AI algorithms can analyze a patient's medical history, lifestyle habits, and genetic
information to recommend the best course of treatment for their condition.
Clinical decision support: AI algorithms can be integrated into electronic health records to
provide healthcare professionals with real-time decision-making support. For example, AI
algorithms can provide physicians with information about the best diagnostic tests to order,
the most effective treatments to consider, and the best ways to manage patient care.
Limitations
Lack of understanding of the underlying algorithms: AI algorithms can be complex and
difficult to understand, making it difficult for healthcare professionals to interpret the results.
This can lead to confusion and mistrust of AI-based tools, particularly among healthcare
professionals who are not familiar with AI technology.
Bias: AI algorithms may be biased, leading to inaccurate or unfair diagnoses. For example,
if an AI algorithm is trained on data from a predominantly male population, it may not
accurately diagnose conditions that affect women differently.
Regulation: The use of AI in healthcare is heavily regulated, and it can be challenging to
get approval for new AI technologies. In many countries, AI algorithms must undergo a
rigorous evaluation process before they can be used in healthcare.
Cost: The development and implementation of AI algorithms can be expensive, which may
limit access to these technologies for some patients and healthcare facilities. This is
particularly true in low- and middle-income countries, where access to healthcare isalready
limited.
SELF-HEALING BIO-CONCRETE
Self-healing bio-concrete is a type of concrete that incorporates microorganisms, such as
Bacillus fragments, into the mixture, along with calcium lactate as a nutrient source.
The microorganisms are activated when the concrete cracks, and they produce calcium
carbonate, which fills in the cracks and repairs the concrete.
This process is known as bio-mineralization.
The benefits of self-healing bio-concrete include increased durability, reduced maintenance
costs, and improved sustainability, as the concrete is able to repair itself without the need
for human intervention.
Additionally, because the microorganisms used in the concrete are naturally occurring and
non-toxic, self-healing bio-concrete is considered to be environmentally friendly.
Self-healing bio-concrete is still a relatively new technology and is currently in the research
and development phase.
However, initial studies have shown promising results and have demonstrated the potential
for self-healing bio-concrete to be a viable alternative to traditional concrete in certain
applications.
Self-healing bio-concrete works by incorporating Bacillus bacteria into the concrete
mixture, along with calcium lactate as a nutrient source.
The bacteria are dormant within the concrete and do not become active until the concrete
cracks When the concrete cracks, water and oxygen enter the crack and activate the Bacillus
bacteria.
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The bacteria then produce calcium carbonate, which is a type of mineral that is commonly
found in natural stone.
The calcium carbonate acts as a binder and fills in the cracks, repairing the concrete and
restoring its structural integrity. This process is known as biomineralization.
The Bacillus bacteria used in self-healing bioconcrete are naturally occurring and nontoxic,
so they are considered to be environmentally friendly.
They are also able to survive in a wide range of temperatures and pH levels, making them
well-suited for use in concrete.
In addition to repairing cracks, self-healing bioconcrete also has the potential to improve the
overall durability of concrete by reducing the amount of water that is able to penetrate the
surface.
This can help to prevent the development of further cracks and increase the longevity of the
concrete.
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Process of removing polluting heavy metals using bioremediation
Identification of heavy metal-contaminated site: Identify the site or area contaminated
with heavy metals, such as soil, water, or industrial waste sites.
Isolation and characterization of metal-resistant microbial strains: Select and isolate
microbial strains that have demonstrated resistance to heavy metals. These can include
bacteria, fungi, or archaea.
Culturing and enrichment of microbial strains: Culture and propagate the selected
microbial strains in a suitable growth medium under laboratory conditions. This step aims
to obtain a sufficient quantity of active microbial biomass for subsequent applications.
Preparation of microbial suspension: Harvest the microbial biomass and prepare a
suspension by suspending the biomass in a carrier solution, such as water or a nutrient broth.
This suspension will serve as the delivery system for the microbes during application.
Application of microbial suspension to the contaminated site: Apply the microbial
suspension to the heavy metal-contaminated area. This can be done through spraying,
injection, or soil/water mixing, depending on the specific site conditions.
Microbial adsorption and sequestration of metal: The applied microbial strains adsorb
to the surfaces of metal particles or form biofilms. Through their metabolic activity, the
microbes produce extracellular compounds such as organic acids or biofilm matrix
components that have an affinity for binding metal ions.
Separation or removal of metals from the contaminated site can achieved through different
methods
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generation of metal precipitates through electrochemical reactions, resulting in the
migration or precipitation of metal ions, which can then be collected and removed.
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