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Models

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Luã Bida
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0% found this document useful (0 votes)
3 views7 pages

Models

Uploaded by

Luã Bida
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as TXT, PDF, TXT or read online on Scribd

from datetime import date

from typing import Optional, Any, Dict, Literal, List, Union, Mapping

import json
import nest_asyncio
import pandas as pd

from mosqlient import types


from [Link] import Mosqlient, Client
from [Link] import schema

nest_asyncio.apply()

class Model([Link]):
client: Optional[Client] = None
_schema: [Link]

def __init__(
self,
id: int,
repository: str,
category: str,
time_resolution: str,
predictions_count: int,
active: bool,
created_at: date,
last_update: date,
description: Optional[str] = "",
imdc_year: Optional[int] = None,
**kwargs,
):
super().__init__(**kwargs)
self._schema = [Link](
id=id,
repository=repository,
description=description,
category=category,
time_resolution=time_resolution,
imdc_year=imdc_year,
predictions_count=predictions_count,
active=active,
created_at=created_at,
last_update=last_update,
)

def __repr__(self) -> str:


return [Link]

@classmethod
def get(cls, api_key: str, **kwargs):
client = Mosqlient(x_uid_key=api_key)
params = [Link](**kwargs)
return list(cls(**item) for item in [Link](params))

def predictions(self, api_key: str, **kwargs):


return [Link](api_key=api_key, model_id=[Link], **kwargs)

@property
def id(self) -> int:
return self._schema.id

@property
def repository(self) -> str:
return self._schema.repository

@property
def description(self) -> Optional[str]:
return self._schema.description

@property
def category(self) -> str:
return self._schema.category

@property
def time_resolution(self) -> str:
return self._schema.time_resolution

@property
def imdc_year(self) -> int | None:
return self._schema.imdc_year

@property
def predictions_count(self) -> int:
return self._schema.predictions_count

@property
def active(self) -> bool:
return self._schema.active

@property
def created_at(self) -> date:
return self._schema.created_at

@property
def last_update(self) -> date:
return self._schema.last_update

class Prediction([Link]):
client: Optional[Client] = None
model: Model
_schema: [Link]

def __init__(
self,
id: int,
model: Model | dict,
disease: [Link],
commit: [Link],
case_definition: Literal["probable", "reported"],
published: bool,
created_at: date,
adm_level: [Link],
description: [Link] = "",
start: Optional[date] = None,
end: Optional[date] = None,
scores: Optional[Dict[str, float]] = None,
adm_0: Optional[str] = None,
adm_1: Optional[int] = None,
adm_2: Optional[int] = None,
adm_3: Optional[int] = None,
data: Optional[[Link]] = None,
client: Optional[Client] = None,
**kwargs,
):
if isinstance(model, dict):
model = Model(**model)

kwargs["model"] = model
kwargs["client"] = client
super().__init__(**kwargs)

[Link] = client

_data = []
if data is not None:
if isinstance(data, str):
try:
loaded = [Link](data)
_data = [[Link](**d) for d in loaded]
except [Link]:
raise ValueError("str `data` must be JSON serializable")
elif isinstance(data, [Link]):
_data = [
[Link](**d)
for d in data.to_dict(orient="records")
]
elif isinstance(data, list):
_data = [[Link](**d) for d in data]

[Link] = model
self._schema = [Link](
id=id,
model=model._schema,
disease=disease,
commit=commit,
description=description,
case_definition=case_definition,
published=published,
created_at=created_at, # type: ignore
start_date=start, # type: ignore
end_date=end, # type: ignore
scores=scores or {},
adm_level=adm_level,
adm_0=adm_0,
adm_1=adm_1,
adm_2=adm_2,
adm_3=adm_3,
data=_data,
)

def __repr__(self) -> str:


return f"Prediction <{[Link]}>"

def update_published(self, status: bool):


if not [Link]:
raise ValueError("Cannot update a prediction that has no ID.")

if not [Link]:
raise ValueError("Prediction instance has no client.")

params = [Link](
id=[Link], published=status
)

res = [Link](params)

if res.status_code == 201:
self._schema.published = status

return res

@staticmethod
def validate_prediction(
api_key: str,
repository: str,
disease: str,
description: str,
commit: str,
prediction: Union[List[Dict], [Link]],
adm_level: int,
case_definition: str = "probable",
published: bool = True,
adm_0: str = "BRA",
adm_1: Optional[int] = None,
adm_2: Optional[int] = None,
adm_3: Optional[int] = None,
) -> None:
owner, repo_name = [Link]("/")
model = [Link](
api_key=api_key,
repository_onwer=owner,
repository_name=repo_name,
)
if not model:
model = [Link](
api_key=api_key,
repository_organization=owner,
repository_name=repo_name,
)
if not model:
raise ValueError(f"Model '{repository}' not found")

model = model[0]
prediction_data = []

if isinstance(prediction, [Link]):
df = [Link]()
if "date" in [Link]:
df["date"] = df["date"].astype(str)

prediction_data = df.to_dict(orient="records")
else:
prediction_data = prediction
float_fields = [
"lower_95",
"lower_90",
"lower_80",
"lower_50",
"pred",
"upper_50",
"upper_80",
"upper_90",
"upper_95",
]

rows = []
for item in prediction_data:
i: Dict[str, Any] = {"date": str(item["date"])}
for field in float_fields:
i[field] = float(item[field])
[Link]([Link](**i))

[Link](
id=None,
model=model._schema,
disease=disease,
commit=commit,
case_definition=case_definition,
published=published,
description=description,
adm_level=adm_level,
adm_0=adm_0,
adm_1=adm_1,
adm_2=adm_2,
adm_3=adm_3,
data=rows,
)

@classmethod
def get(cls, api_key: str, **kwargs):
client = Mosqlient(x_uid_key=api_key)
params = [Link](**kwargs)
return list(cls(**item, client=client) for item in [Link](params))

@classmethod
def post(cls, api_key: str, **kwargs):
client = Mosqlient(x_uid_key=api_key)
params = [Link](**kwargs)
res = [Link](params)
data = [Link]([Link])

if "id" in data:
predictions = [Link](api_key=api_key, id=data["id"])
if predictions:
return predictions[0]

return cls(**data, client=client)

def delete(self, api_key: str):


if not [Link]:
raise ValueError("Cannot delete a prediction that has no ID.")
return self.delete_by_id(api_key=api_key, id=[Link])
@classmethod
def delete_by_id(cls, api_key: str, id: int):
client = Mosqlient(x_uid_key=api_key)
params = [Link](id=id)
return [Link](params)

@property
def id(self) -> [Link] | None:
return self._schema.id

@property
def disease(self) -> [Link]:
return self._schema.disease

@property
def description(self) -> [Link]:
return self._schema.description

@property
def commit(self) -> [Link]:
return self._schema.commit

@property
def data(self) -> List[[Link]]:
if not self._schema.data and [Link] and [Link]:
params = [Link](id=[Link])
raw_data = [Link](params)
self._schema.data = [
[Link](**d) for d in raw_data
]

return self._schema.data or []

def to_dataframe(self) -> [Link]:


return [Link]([dict(d) for d in [Link]])

@property
def case_definition(self) -> str | None:
return self._schema.case_definition

@property
def published(self) -> bool:
return self._schema.published

@property
def start(self) -> date | None:
return self._schema.start_date # type: ignore

@property
def end(self) -> date | None:
return self._schema.end_date # type: ignore

@property
def scores(self) -> Optional[Mapping[str, float | None]]:
return self._schema.scores or {}

@property
def created_at(self) -> date:
return self._schema.created_at # type: ignore

@property
def adm_0(self) -> str | None:
return self._schema.adm_0

@property
def adm_1(self) -> int | None:
return self._schema.adm_1

@property
def adm_2(self) -> int | None:
return self._schema.adm_2

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