Module 2 Notes
Module 2 Notes
Contents- Carbohydrates (cellulose-based water filters, PHA and PLA as bioplastics), Nucleic
acids (DNA Vaccine for Rabies and RNA vaccines for Covid19, Forensics – DNA
fingerprinting), Proteins (Proteins as food – whey protein and meat analogs, Plant based
proteins), lipids (biodiesel, cleaning agents/detergents), Enzymes (glucose-oxidase in
biosensors, lignolytic enzyme in bio-bleaching).
BIOMOLECULES AND THEIR APPLICATIONS:
Biomolecule, also called biological molecule, any of numerous substances that are produced
by cells and living organisms.
Biomolecules have a wide range of sizes and structures and perform a vast array of functions.
The four major types of biomolecules are carbohydrates, lipids, nucleic acids, and proteins.
Among biomolecules, nucleic acids, namely DNA and RNA, have the unique function of
storing an organism’s genetic code—the sequence of nucleotides that determines the amino
acid sequence of proteins, which are of critical importance to life on Earth.
Carbohydrates, which are made up primarily of molecules containing atoms of carbon,
hydrogen, and oxygen, are essential energy sources and structural components of all life, and
they are among the most abundant biomolecules on Earth. They are built from four types of
sugar units— monosaccharides, disaccharides, oligosaccharides, and polysaccharides.
Lipids, another key biomolecule of living organisms, fulfil a variety of roles, including
serving as a source of stored energy and acting as chemical messengers. They also form
membranes, which separate cells from their environments and compartmentalize the cell
interior, giving rise to organelles, such as the nucleus and the mitochondrion, in higher (more
complex) organisms.
The main applications of biomolecules are: The biomolecules may involve in several
processes such as energy storage (carbohydrates), catalyzing the biochemical reactions
(hormones), storing/transmitting the genetic codes (RNA/DNA), or altering biological and
neurological activities (neurotransmitter/hormones).
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CARBOHYDRATES
Carbohydrates are sugar molecules. Along with proteins and fats, Carbohydrates are one of
three main nutrients found in foods and drinks. Body breaks down carbohydrates into
Glucose. Glucose or blood sugar, is the main source of energy for your body’s cells, tissues
and organs. Glucose can be used immediately or stored in the lever and muscles for later use.
(carbohydrates)
1. Sugars: They are also called as simple- carbohydrates because they are in the most
basic form. They can be added to foods, such as the sugar in candy, desserts,
processed foods, and regular soda. They also include the kinds of sugar that are found
naturally in fruits, vegetables and milk.
2. Starches: They are complex carbohydrates, which are made up of lots of simple
sugars strung together. Your body needs to break starches down into sugars to use
them for energy. Starches include bread, cereal and pasta. They also include certain
vegetables like potatoes, peas and corn.
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3. Fiber: It is also complex Carbohydrate. Our body cannot breakdown most fibers, so
eating foods with fiber can help you feel full and make you less likely to overeat.
Diets high in fiber have other health benefits. They may help prevent stomach or
intestinal problems, such as constipation. They may also help lower cholesterol and
blood sugar. Fiber is found in many foods such as fruits and vegetables.
Taking benefit of these advantages of cellulose, we have a best application of cellulose that is
Cellulose based water filters.
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The interest in the use of biobased filters for water purification has increased in recent years, as
such have the potential to be affordable, lightweight and biodegradable. Research has been
focused on creating biobased membranes for micro and ultrafiltration from cellulose nanofibrils
(CNFs).
Filters based on cellulose pulp filters do usually have large pores that facilitate water
percolation but they do not sufficiently remove bacteria through size exclusion; other
techniques are therefore needed to achieve a bacteria-reducing effect. Several groups have
addressed this issue by incorporating antibacterial metal nanoparticles into cellulose-based
water filters, both silver nanoparticles (AgNPs), and copper nanoparticles (CuNPs) are known
to have good antibacterial effects.
An alternate method to physically remove bacteria from water, while keeping the filter pore
size larger than bacteria, is to use positively charged filters that adsorb negatively charged
bacteria onto the surfaces of the filters.
This allows negatively charged particles much smaller than the filter pore size to be
efficiently removed from water and this is an interesting approach for removing bacteria from
water without adding any toxic chemicals or reducing the flow by reducing pore size. Both
Gram-positive and gram-negative bacteria have a negative net surface charge on the cell
envelope, due to peptidoglycans, liposaccharides and proteins in the cell wall, and this makes
their removal non-selective and efficient for most types of bacteria.
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FLOURESCENCE MICROSCOPY
Cellulose filter papers are versatile and diverse tools for micro filteration, that work by
trapping particulates within a random matrix of cellulose fibers. Cellulose filter papers can be
categorized as quantitative or qualitative, depending on their application.
Just like, how we introduced biodegradable water treatment plant from cellulose, we also
have a replacement for toxic, non-biodegradable plastics which we are using in our daily life.
That is bioplastics.
Bioplastics are one type of plastic which can be generated from natural resources such as
starches and vegetable oils. Bioplastics are basically classified as bio based and/or
biodegradable. Not all bio-based plastics are biodegradable and similarly not all
biodegradable plastics are bio based. Bioplastics are referred to as bio based when the focus
of the material is on the origin of the carbon building block and not by where it ends up at the
end of its cycle life. Bio plastics are said to be biodegradable if they are broken down with the
effect of the right environment conditions and microbes which in turn use them as a food
source. The bioplastics are considered compostable if within 180days, a complete microbial
assimilation of the fragmented food sources takes place in a compost environment.
Based upon this, we have PHA and PLA.
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PLA: It is both biobased and biodegradable under industrial composting conditions ( at high
temperature around 580c). Because of its good mechanical properties, processability,
renewability, and non-toxicity, PLA is considered today as one of the most commercially
promising bioplastics. When compared with most other biodegradable polymers, PLA has
better durability, transparency and mechanical strength.
PHAs: These are a significant polymer family that are 100% bio-based and bio-degradable.
PHAs are microbiologically produced polyesters that have tunable physical and mechanical
properties. This is accompanied by low environmental impact due to their biodegradability
and non-toxicity nature. Therefore, they are promising candidates for a sustainable future
manufacturing. Ranging from brittle thermoplastics to gummy elastomers, PHAs properties
can be altered by the selection of bacteria, fermentation conditions and substrate. Due to their
flexible properties, PHAs can eventually substitute PP, Polyethylene (PE), and
polystyrene(PS), which are the main polymers of todays global polymer market.
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NUCLEIC ACID
Nucleic acids are biopolymers, macromolecules, essential to all known forms of life. They
are composed of nucleotides, which are the monomers made of three components: a 5-carbon
sugar, a phosphate group and a nitrogenous base. The two main classes of nucleic acids are
Deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). If the sugar is ribose, the polymer
is RNA. If the sugar is the ribose derivative deoxyribose the polymer is DNA.
Nucleic acids are naturally occurring chemical compounds that serves as the primary
information- carrying molecules in cells and make up the genetic material. Nucleic acids are
found in abundance in all living things, where they create, encode, and then store information
of every living cell of every life-form on earth. In turn, they function to transmit and express
that information inside and outside the cell nucleus to the interior operations of the cell and
ultimately to the next generation of each living organism. The encoded information is
contained and conveyed via the nucleic acid sequence, which provides the “ladder -step”
ordering of nucleotides within the molecules of RNA and DNA. They play an especially
important role in directing protein synthesis.
Strings of nucleotides are bonded to form helical backbones- typically, one for RNA, two for
DNA-and assembled into chains of base-pairs selected from the five primary, or canonical,
nucleobases, which are: adenine, cytosine, guanine, thymine and uracil. Thymine occurs only
in DNA and uracil only in RNA.
The two main acids are DNA and RNA, which is the fundamental unit of any living
organisms. Based on these factors, there are many applications for the same of which are
explained below:
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gets rid of them. The mRNA never enters the central part(nucleus) of the cell, which is
where our DNA (genetic material) is found. Your DNA can’t be altered by mRNA
vaccines.
The cell then displays the protein piece on its surface. Our immune system recognizes
that the protein doesn’t belong there and begins building an immune response and making
antibodies.
2. FORENSIC-DNA FINGERPRINTING:
DNA fingerprinting is also called DNA typing, DNA profiling, genetic fingerprinting,
genotyping, or identify testing, in genetics, method of isolating and identifying variable
elements within the base-pair sequence of DNA(deoxyribonucleic acid).
The procedure for creating a DNA fingerprint consists of first obtaining a sample of cells,
such as skin, hair, or blood cells, which contains DNA. The DNA is extracted from the
cells and purified, the DNA was then cut at specific points along the stand with proteins
known as restriction enzymes. The enzymes produced fragments of varying lengths that
were sorted by placing them on a gel and then subjecting the gel to an electric current
(electrophoresis): the shorter the fragment, the more quickly it moved toward the positive
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pole(anode).
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The sorted double-stranded DNA fragments were then subjected to a blotting technique in
which they were split into single strands and transferred to a nylon sheet. The fragments
underwent autoradiography in which they were exposed to DNA probes- pieces of
synthetic DNA that were made radioactive and that bound to the minisatellites. A piece of
X-ray film was then exposed to the fragments, and dark mark was produced at any point
where radioactive probe had become attached. The resultant pattern of marks could then
be analyzed. The DNA testing process is comprised of four main steps, including
extraction, quantitation, amplification and capillary electrophoresis.
DNA fingerprinting is a laboratory technique used to determine the probable identify of a
person based on the nucleotide sequences of certain regions of human DNA that are
unique to individuals. Forensic genetic fingerprinting can be defined as the comparison of
the DNA in a person’s nucleated cells with that identified in biological matter found at the
scene of a crime or with the DNA of another for the purpose of identification or
exclusion. The application of these techniques introduces new factual evidence to
criminal investigations and court cases.
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DNA FINGERPRINTING
So, this is all about nucleic acids, considering the two main nucleic acids, that is, DNA
and RNA, discussing about some of the most important applications of these nucleic
acids.
PROTEINS
Protein is found throughout the body in muscle, bone, skin, hair, and virtually every other
body part or tissue. It makes up the enzymes that power many chemical reactions and the
hemoglobin that carries oxygen in your blood.
Taking more about proteins based on biomolecule concept, Proteins are large
biomolecules and macromolecules that comprise one or more long chains of amino acid
residues. Proteins perform a vast array of functions within organisms, including
catalysing metabolic reactions, DNA replication, responding to stimuli, providing
structure to cells and organisms, and transporting molecules from one location to another.
Proteins differ from one another primarily in their sequence of amino acids, which is
dictated by the nucleotide sequence of their genes, and which usually results in protein
folding into a specific 3D structure that determines its activity.
Proteins are assembled from amino acids using information encoded in genes. Each
protein has its own unique amino acid sequence that is specified by the nucleotide
sequence of the gene encoding this protein. The genetic code is a set of three-nucleotide
sets called codons and each three nucleotide combination designates an amino acid.
The process of synthesizing a protein from an mRNA template is known as translation.
The mRNA is loaded onto the ribosome and is read three nucleotides at a time by
matching each codon to its base pairing anticodon located on a transfer RNA molecule,
which carries the amino acid corresponding to the codon it recognizes. The enzyme
aminoacyl tRNA synthetase “charges” the tRNA molecules with the correct amino
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polypeptide is often termed the nascent chain. Proteins are always biosynthesized from N-
terminus to C-terminus.
Proteins are the chief actors within the cell, said to be carrying out the duties specified by
the information encoded genes. With the exception of certain types of RNA, most other
biological molecules are relatively inert elements upon which proteins act. Proteins make
up of half the dry weight of an Escherichia coli cell, whereas other macromolecules such
as DNA and RNA make up only 3% and 20% respectively. The set of proteins expressed
in a particular cell or cell type is known as its proteome.
PROTEIN AS FOOD:
Protein is a key part of any diet. The average person needs about 7 grams of protein every day
for every 20 pounds of body weight. Because protein is found in an abundance of foods,
many people can easily meet this goal. However, not all protein “packages” are created equal.
Because food contain a lot more than protein, its important to pay attention to what else is
coming with it. Animal based foods (meat, poultry, fish, eggs and dairy foods)tend to be good
sources of complete protein, while plant-based foods(fruits, vegetables, grains, nuts and
seeds) often lack one or more essential amino acid.
Whey protein is a mixture of proteins isolated from whey, the liquid material created as a
by-product of cheese production. The proteins consist of α-lactalbumin, β-lactoglobulin,
serum albumin and immunoglobulins. Glycomacropeptide also makes up the third largest
component but is not a protein. Whey protein is commonly marketed as a protein supplement,
and various health claims have been attributed to it.
Whey is lift over when milk is coagulated during the process of cheese production, &
contains everything that is soluble from milk after the pH is dropped to 4.6 during the
coagulation process. It is a 5% solution of lactose in water and contains the wate soluble
proteins of milk as well as some lipid content. Processing can be done simple simple drying,
or the relative protein content can be increased by removing the lactose, lipids and other non-
protein materials. The primary usage of whey protein supplements is for muscle growth and
development. Eating whey protein supplements before exercise will not assist athletic
performance, but it will enhance the body’s protein recovery and synthesis after exercise
because it increases the free amino acids in the body’s free amino acid pool.
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Meat analogues find raising interest of many consumers who are looking for indulgent,
healthy, low environmental impact, ethical, cost-effective, and/or new food products.
High moisture extrusion cooking enables the production of fresh, premium meat
analogues that are texturally like muscle meat from plant or animal proteins. The
appearance and eating sensation are similar to cooked meat while high protein content
offers a similar nutritional value. This article focuses on plant-based meat analogues and
covers process and product-related aspects including ingredients and structure formation,
flavour, taste and nutritional value, postextrusion processing, packaging and shelf life,
consumer benefits, and product-related environmental impacts.
Meat analogues, can be defined as products that mimic meat in its functionality, bearing
similar appearance, texture, and sensory attributes to meat. Production of meat analogues
has been on the increase, targeted at satisfying consumers’ desire for indulgent, healthy,
low environmental impact, and ethical meat substitutes.
The factors that lead to this shift is due to low fat and calorie foods intake, flexitarians,
animal disease, natural resources depletion, and to reduce greenhouse gas emission.
Currently, available marketed meat analog products are plant-based meat in which the
quality (ie: texture or taste) are similar to the conventional meat. The ingredients used are
mainly soy proteins with novel ingredients added, such as mycoprotein and soy
leghemoglobin.
Plant protein is simply a meaningful food source of protein which is from plants. This
group can include pulses, tofu, soya, tempeh, seitan, nuts, seeds, certain grains and
even peas.
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Pulses are a large group of plants, which include chickpeas, lentils, beans( such as black,
kidney and adzuki beans) and split peas.
Plant proteins are highly nutritious – not only as good sources of protein, but also because
they provide other nutrients such as fibre, vitamins and minerals. Our intake of fibre tends
to be too low, however by incorporating certain plant proteins into your diet, such as
pulses, peas and nuts, you can easily boost your fibre intake.
Consumer demand for plant protein- based products is high and expected to grow
considerably in the next decade. Factors contributing to the rise in popularity of plant
proteins include,
1. potential health benefits associated with increased intake of plant-based diets.
2. consumer concerns regarding adverse health effects of consuming diets high in animal
protein (eg: increased saturated fat)
3. increased consumer recognition of the need to improve the environmental
substainability of food production.
4. Ethical issues regarding the treatment of animals.
5. General consumer view of protein as a “positive” nutrient (more is better). While
there are health and physical function benefits of diets higher in plant-based protein,
the nutritional quality of plant proteins may be inferior in some respects relative to
animal proteins.
LIPIDS
Discussing about another important biomolecule, lipids, are a broad group of naturally
occurring molecules which includes fat, waxes, sterols, fat-soluble vitamins( such as
vitamin A,D,E and K), monoglycerides, diglycerides, phospholipids and others. The
functions of lipids include storing energy, signaling, and acting as structural components
of cell membranes. Lipids have applications in the cosmetic and food industries and in
nanotechnology.
Lipids may be broadly defined as hydrophobic or amphiphilic small molecules; the
amphiphilic nature of some lipids allows them to form structures such as vesicles,
multilamellar/ unilamellar liposomes, or membranes in an aqueous environment.
Biological lipids originate entirely or in part from two distinct types of biochemical
subunits or “building-blocks” ketoacyl and isoprene groups. Using this approach, lipids
may be devided into eight categories: fatty acyls, glycerolipids, glycerenophospholipids,
sphingolipids, saccharolipids, and polyketides (derived from condensation of ketoacyl
subunits): and sterol lipids and prenol lipids ( derived from condensation of isoprene
subunits).
A biological membrane is a form of lamellar phase lipid bilayer. The formation of lipid
bilayers is an energetically preferred process when the glycerophospholipids described
above are in an aqueous environment. This is known as the hydrophobic effect.
Some of applications are: within the body, lipids function as an energy reserve, regulate
hormones, transmit nerve impulses, cushion vital organs, and transport fat-soluble
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nutrients. Fat in food serves as an energy source with high caloric density, adds texture
and taste, and contributes to society.
Lipid obtained from food waste was used as a potential feedstock for biodiesel production
using both a chemical catalyst and biocatalyst. Base (KOH) catalyzed transesterification
of the lipid allowed a 100% conversion of biodiesel in 2 h; whereas Novozyme-435
yielded 90% biodiesel in 24h. So lipids are having a main application in biodiesel
production.
Biodiesel demonstrates an animal fat-based or vegetable oil diesel fuel, including long
chain- alkyl (methyl, ethyl, or propyl) esters. Biodiesel is generally made by esterifying
lipids (eg: soybean oil, vegetable oil, and animal fat (tallow)) with an alcohol generating
fatty acid esters. Biodiesel is suggested to be utilized in standard diesel engines and is
thus well defined from the vegetable and waste oils used to fuel converted diesel engines.
Biodiesel can be used singly or blended with gasoline in any proportions. Biodiesel
blends can also be utilized as heating oil.
(Biodiesel Production)
Lipids also has an interesting application in cleaning agents. Considering the case of,
DETERGENTS:
The hydrophobic end of the phospholipid bilayer stays away from the water. This avoids
the dissolution of cell membrane in water. But the detergent can bind to the hydrophobic
end of the cell membrane and from a solution with water, thus breaking the cell
membrane barrier.
Detergent monomers solubilize membrane proteins by partitioning into the membrane
bilayer. With increasing amounts of detergents, membranes undergo various stages of
solubilization. The initial stage is lysis or rupture of the membrane.
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While lipids also have the same general structure as detergents – a polar hydrophilic head
group and a nonpolar hydrophobic tail- lipids differ from detergents in the shape of
monomers, in the type of aggregates formed in solution, and in the concentration range
required for aggregation.
ENZYMES:
Are another important biomolecule, which are proteins that help speed up metabolism, or
the chemical reactions in our bodies. They build some substances and break others down.
All living things have enzymes. Our bodies naturally produce enzymes. The six kinds of
enzymes are hydrolases, oxidoreductases, lyases, transferases, ligases, and
isomerases.
Enzymes perform the critical task of lowering a reactions activation energy – that is the
amount of energy that must be put in for the reaction to begin. Enzymes work by binding
to reactant molecules and holding them in such a way that the chemical bond-breaking
and bond-forming processes take place more readily.
Due to their high specificity, simplicity, and scalability, enzyme-based biosensors
represent a fast, precise and continuous monitoring of analytes. Additionally, the high
specificity of enzymes enhances the ability to detect lower analyte concentration limits.
So enzymes are used in biosensors.
Biosensors are employed in applications such as disease monitoring, drug discovery, and
detection of pollutants, disease causing micro-organisms and markers that are indicators
of a disease in bodily fluids(blood, urine, saliva, sweat). Various types of biosensors
being used are enzyme-based, immunosensors, DNA biosensors, thermal and
piezoelectric biosensors. There are wide variety of enzymes used in biosensors. One such
enzyme is glucose oxidase, mainly in amperometric glucose biosensor.
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(function of enzymes)
Glucose oxidase (Gox) is widely used enzyme in glucose biosensor due to its better
stability and relatively inexpensive. Gox catalyses the redox reaction and transfer
electrons from enzyme active sites to electrode for glucose level analysis in blood
samples. Amperometric glucose biosensor was fabricated by immobilizing glucose
oxidase (GOx), the most popular enzyme used for glucose detection, is able to reduce
oxygen to hydrogen peroxide while at the same time transforming glucose to d-glucono-1,
5-lactone. Quantification of glucose can be achieved based on their the detection of the
hydrogen peroxide produced or the oxygen consumed.
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