SUMMER TRAINING
PROGRAMS 2026
ON NGS & BIOMEDICAL DATA SCIENCE
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
OmicsLogic Summer Programs are designed to immerse participants in the field of Bioinformatics
and biomedical data science. Participants can expect to learn various aspects of omics data analysis,
including data preprocessing, statistical analysis, machine learning, and data visualization. From
beginners to advanced, the curriculum is structured to accommodate participants with varying levels
of experience.
PROGRAM CATALOGUE TRAINING PROGRAM
FEATURES
Asynchronous Mentor Guided
Training & Research Experience
Introduction to Big Data Structured Curriculum with Hands-On
Bioinformatics: Tutorials & Expert Support
Multi-Omics
Covers Transitional & Industry
Relevant Data Analysis Technologies
Practical Quizzes | Graded
NGS Genomic Transcriptomics for
Assignments | Coding Exercises
Data Analysis Biomedical Research
Integrated Open-Source Tools &
Algorithms
Course Certifications | Program
Completion Certificate
Proteomics for Biomedical Data Science
Biomedical Research using Python
Lifetime Access to Google Colab
Each training program is structured into beginner, Notebooks for Coding
intermediate, and advanced levels, offering mentor-
led video sessions along with separate access to
LIVE Online Bioinformatics &
curated courses and example projects for both Technical Support
conceptual and application-based learning.
VIRTUAL SUMMER TRAINING PROGRAMS 2026
INTRODUCTION TO MODERN
BIOINFORMATICS
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
A hands-on bioinformatics program covering genomics, transcriptomics, metagenomics,
single-cell analysis, and AI-driven workflows from beginner to advanced.
BEGINNER LEVEL
Molecular biology foundations including DNA structure and key genomic
variations
End-to-end genomics and sequencing workflows from biological samples
to interpretation
Next- and third-generation sequencing technologies with quality control
and analysis concepts
Biological data formats, public databases, and fundamental sequence
analysis approaches
Practical bioinformatics using R and Python for data analysis, statistics,
and visualization
INTERMEDIATE LEVEL
Linux fundamentals for bioinformatics workflows, environment management,
and Bash scripting
AI-powered sequence analysis with practical genomics pipelines and variant
interpretation
Transcriptomics and RNA-seq analysis from experimental design to functional
insights
End-to-end metagenomics analysis for microbial diversity and taxonomic
profiling
Single-cell transcriptomics workflows covering preprocessing, analysis, and
visualization
ADVANCED LEVEL
Advanced single-cell RNA-seq analysis in R using Seurat from QC to
clustering
Cell type annotation in scRNA-seq using SingleR and reference datasets
Git and GitHub workflows for reproducible and collaborative bioinformatics
Building professional, community-ready bioinformatics repositories
LLM-assisted coding for bioinformatics and research software development
DATABASES & TOOLS COVERED
VIRTUAL SUMMER TRAINING PROGRAMS 2026
NGS GENOMICS
DATA ANALYSIS
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
A practical journey through assembly, variant discovery, annotation, and interpretation
in genomics
BEGINNER LEVEL
DNA structure and genetic variants SNPs, insertions, deletions with
significance
Genomics workflow from biological samples to sequencing and variation
study
NGS technologies with workflows, quality control, and troubleshooting
Sequencing data formats FASTQ, BAM, VCF and key databases with
practical alignment and tree building
Viral genome case study using NCBI Virus with R for alignment,
visualization, and phylogenetics
INTERMEDIATE LEVEL
Genomic analyses: variant discovery, phylogenetics, expression profiling, and
functional annotation.
Translating sequencing data into meaningful biological insights.
Public repositories: NCBI, ENA, EBI; resources include SRA Run Table, TCGA,
gnomAD, ClinVar, WormBase, and FlyBase.
Practical guidance on searching, retrieving, and managing genomic datasets.
De novo assembly workflow using sequencing data from SRA and ENA, with
setup on Google Colab.
ADVANCED LEVEL
FastQC, trimming, assembly with SPAdes/MEGAHIT, metrics, Prokka
annotation, visualization.
Reference-based assembly: prepare genome, download FASTQ, QC, trim
with fastp, align with BWA-MEM.
GATK 4.6 workflow: MarkDuplicates, BaseRecalibrator, HaplotypeCaller,
filtering, VEP, ACMG, genome browsers.
Variant interpretation: ACMG classification and prioritization.
Variant annotation with ANNOVAR.
DATABASES & TOOLS COVERED
VIRTUAL SUMMER TRAINING PROGRAMS 2026
TRANSCRIPTOMICS FOR
BIOMEDICAL RESEARCH
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
Unlocking the Secrets of Gene Expression: Empower Your Biomedical Research with
Practical RNA-seq Data Analysis Skills
BEGINNER LEVEL
Next Generation Sequencing Technology: Types & Principles
RNA-Seq Workflow & Data File Formats
Literature Review & Study Design
Open Database Sources for Data Extraction (GEO, TCGA, GDC, etc.)
Metadata Handling & Pivot Table Exploration
Data Cleaning, Normalization & Log Transformation
Exploratory Data Analysis (PCA, MDS, t-SNE)
Statistical Tests using Excel and Differential Gene Expression
INTERMEDIATE LEVEL
Differential Gene Expression Analysis with DESeq2
Visualization of DEGs: Volcano and MA Plots
Pathway Annotation & Functional Analysis (DAVID, Reactome, KEGG, iLINCS)
Network Analysis & Interaction Mapping (GeneMania, X2K Web, SigNetA)
Gene Set Enrichment Analysis (GO & KEGG with ClusterProfiler, gProfiler, Ensembl)
Pathway Visualization & Multi-Pathway Exploration (KEGG, GSEA)
Data Validation & Network Visualization (Cytoscape, STRING)
ADVANCED LEVEL
Correlation & Regression Analysis in RNA-Seq Data
Unsupervised Machine Learning: Clustering & Hierarchical Methods
Introduction to Single-Cell RNA-Seq & Data Preprocessing (Cell Ranger, QC)
Single-Cell Analysis Workflow: Seurat, Normalization, Clustering & Visualization
Differential Expression & Label Assignment in Single-Cell Data
Cell Type Annotation & Functional Analysis Using Reference Datasets
DATABASES & TOOLS COVERED
VIRTUAL SUMMER TRAINING PROGRAMS 2026
BIOMEDICAL DATA SCIENCE
USING PYTHON
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
Harnessing Python for bioinformatics, statistical analysis, machine learning, and deep learning
to drive data-driven insights.
BEGINNER LEVEL
Bioinformatics foundations with genomics, RNA-Seq, scRNA-Seq, and
metagenomic analysis
Python essentials for data science: variables, loops, functions, classes, and
exceptions with hands-on practice
Python libraries NumPy and Pandas for data handling, importing, cleaning,
and wrangling
Data visualization using box plots, heatmaps, scatter plots, and histograms
with exploratory analysis
Statistical methods and dimensionality reduction with PCA, ordination, and
manifold learning
INTERMEDIATE LEVEL
Introduction to unsupervised learning: dimensionality reduction and
clustering methods (K-Means, Hierarchical, Spectral)
Implementing clustering in Python using SciKit and SciPy, with hands-on
comparisons of algorithms
Model validation techniques including K-Fold cross validation
Introduction to supervised learning methods: logistic regression, linear
regression, decision tree, random forest, kNN, and SVM
Supervised Analysis Hands-On: data preparation, building classifiers, and
estimating feature importance with random forest
ADVANCED LEVEL
Introduction to Deep Learning: concepts, applications, and differences from
traditional machine learning
Deep Learning Foundations: data preprocessing, NumPy, Pandas, and
TensorFlow/Keras basics
Neural Network Architecture: layers, activation functions, optimization, and
loss functions
Building and training neural networks for dimensionality reduction with
autoencoders
Predictive Modeling with Deep Learning: classification and regression
tasks, model evaluation, and validation techniques
PACKAGES COVERED
VIRTUAL SUMMER TRAINING PROGRAMS 2026
PROTEOMICS FOR
BIOMEDICAL RESEARCH
Undergraduate | Post Graduate's | Faculty & Staff | Scientists & Researchers
From Big Data to Biomarkers: Advance Your Biomedical Research with Cutting-Edge
Proteomics Workflows, Statistical Analysis, and Cancer Therapy Applications.
BEGINNER LEVEL
Foundations of proteomics and its role alongside other
omics.
Human proteome complexity and introduction to big data
in proteomics.
Protein quantification methods and the Human Proteome
Project.
Basics of biomarker discovery and disease applications.
Fundamentals of mass spectrometry and peptide
identification using Mascot
INTERMEDIATE LEVEL
Data preprocessing, normalization, and quality control in
proteomics.
Statistical testing and biomarker discovery using
MetaboAnalyst.
Computational workflows with FragPipe for protein
identification and quantification.
Pathway and PPI network analysis for functional insights.
Translational applications in cancer immunotherapy and
target discovery for therapy development.
DATABASES & TOOLS COVERED