Research Methods in Human
Nutrition
Instructor: Fentanesh Nibret ( Ph.D Associate Professor )
Department of Applied human nutrition,
Faculty of food and chemical engineering,
Bahirdar Institute of technology,
Bahirdar University
Email: fantshnibret@[Link]
Fentanesh N.(PhD.) 1
Data collection
Fentanesh N.(PhD.) 2
Some Issues to Consider in Choosing Data Collection
Methods
o Cost
o Geographic location of respondents
o Length and complexity of questionnaire
o Sensitivity of topic
o Accuracy
o Error
o Coverage error
o Sampling error
o Nonresponse error
o Measurement error
Fentanesh N.(PhD.) 3
Data collection techniques
Quantitative Data collection Qualitative data
Using available information collection
Observing Focus group discussions
Interviewing In-depth interview
Self-administering written Observation
questionnaires Key informant interview
Fentanesh N.(PhD.) 4
Quantitative Data collection
1. Available data
Clinical records and other personal records, death
certificates, published mortality statistics, census
publications, etc
Advantages:
o Documents can provide ready made information relatively
easily
o The best means of studying past events
Fentanesh N.(PhD.) 5
Disadvantages of available data
1) Problems of reliability
2) There is a possibility that errors may occur when the
information is extracted from the records
3) The information required may not be recorded at all, or
only partly recorded.
Fentanesh N.(PhD.) 6
2. Observation
Observation is a technique that involves systematically
selecting, watching and recording behavior and
characteristics of living beings, objects or phenomena
Observation can give additional, more accurate
information on behavior of people than interviews or
questionnaires
Fentanesh N.(PhD.) 7
2. Observation cont.---
Observations of human behavior can form any type of
study, but as they are time consuming
Observations can also be made on objects the presence
or absence of latrines and the state of cleanliness may be
observed
Fentanesh N.(PhD.) 8
3. Interviewing
It involves oral questioning of respondents, either
individually or as a group
Answers can be recorded by writing or by tape-recording
the responses, or by a combination of them
Interviews can be conducted with varying degree of
flexibility (high degree of flexibility Vs low degree of
flexibility)
High degree of flexibility: Usually used when studying sensitive
issues or when the researcher has little understanding of the
problem
Fentanesh N.(PhD.) 9
Interviewing cont.
When studying sensitive issues (e.g. abortion ) the
investigator may use a list of topics rather than fixed
questions
The sequence of topics should be determined by the flow
of discussion
It is often possible to come back to a topic discussed
earlier in a later stage of the interview
Fentanesh N.(PhD.) 10
4. Self-administered questionnaire
Written questions are presented that are to be answered
by the respondents in written form
A written questionnaire can be administered in different
ways, such as by:
Sending questionnaires by mail
Gathering all or part of the respondents in one place at one
time
Hand-delivering questionnaires to respondents and
collecting them later
Fentanesh N.(PhD.) 11
Qualitative data collection
1. Focus group discussions(FGD)
FGD can be used when:
Limited resources (time, manpower, finances)
The phenomena being researched requires a collective
discussion in order to understand the circumstances,
behaviour or opinions
Greater insights may be developed of the group dynamic
FGDs allow a group of 6-12 informants to freely
discuss a certain subject with the guidance of a
facilitator or reporter
The members of FGD should be homogeneous
Fentanesh N.(PhD.) 12
Qualitative data collection…
2. In depth interview
Qualitative interviews should be fairly informal and
participants feel they are taking part in a
conversation or discussion rather than in a formal
question and answer situation.
Fentanesh N.(PhD.) 13
Qualitative data collection…
3. Observation
Observation can sometimes obtain more reliable
information about certain things
for example, how people actually behave
Observation can also serve as a technique for verifying of
nullifying information provided in face to face encounters
People or environment can be observed.
Fentanesh N.(PhD.) 14
Qualitative data collection…
4. Key informant interview
Obtaining information from a community resident who is in a position
to know the community as a whole, or a particular area of interest
The person can be a profession person who works with the population
you want information about, or a member of the target population
Provides in-depth information about causes of the problem
Informants may give you their own impression and biases
Fentanesh N.(PhD.) 15
Questionnaire Design
Purpose: To get reliable and valid data/reports
from respondents
Good survey questions provide reliable (consistent)
and valid (accurate) measures
When 2 respondents are in the same situation they
should answer the question the same way
The answers to questions should correspond to
what they are intended to measure
Fentanesh N.(PhD.) 16
Before Writing Questions
Decide the study’s purpose (aims, research
questions, hypotheses)
Identify the variables to be measured
Develop a preliminary analysis plan
Fentanesh N.(PhD.) 17
Process of Questionnaire Design
Decide what information (variables) is needed
Draft or obtain questions to elicit that information
Put questions in meaningful order
Add other elements of questionnaire
Pretest questionnaire
Fentanesh N.(PhD.) 18
Types of Questions-
Open-ended
Responses are not provided to the respondent
Advantages:
-Respondent not influenced by specific alternatives
suggested
-Respondent can reveal what is most salient/relevant
-Can be used to build rapport in interview
Fentanesh N.(PhD.) 19
Open-ended questions
Disadvantages:
o Large amount of information revealed, may be vague or
irrelevant
o Respondents may vary in ability to articulate
o Respondents may be reluctant to reveal detailed
information or socially unacceptable opinions or
behaviors
o Difficulties in recording and in reducing and coding
material
Fentanesh N.(PhD.) 20
Types of Questions –
Close-ended
A list of acceptable responses is provided to the respondent
o Advantages:
-Easier for respondent
-Communicates same frame of reference to respondents
-Standardization
-Less variability in interviewer performance
-Less time to administer and record response
Fentanesh N.(PhD.) 21
Close-ended Questions
Disadvantages:
o Lack of spontaneity permitted respondent
o Respondent may be forced into an unnatural frame of
reference
o May suggest response categories respondent has not
thought of
o Respondent may not feel as involved or motivated by
questionnaire
o Need to know appropriate response categories in
advance
Fentanesh N.(PhD.) 22
In questionnaire design remember to:
Make the wording clear and unambiguous in meaning
Use familiar and appropriate language
Write questions like people talk not like people write
Start with simpler questions
Ask the same question to all respondents
Provide sufficient space for the response (For open ended
questions)
Fentanesh N.(PhD.) 23
In questionnaire design remember to:
o Avoid abbreviations, double negatives, etc.
o Avoid two elements to be collected through one question
o Avoid leading questions
o Avoid embarrassing and painful questions
o Provide other, or don‟t know options where appropriate
Fentanesh N.(PhD.) 24
In questionnaire design remember to:
o Provide the unit of measurement for continuous variables
(years, months, kgs, etc.)
o Arrange questions in logical sequence
o Pre-code the responses to facilitate data processing
o Pretest the questionnaire
Fentanesh N.(PhD.) 25
Question Order
o General questions before specific
o Beginning – inviting, interesting, non-threatening
questions
o Middle – most important, put difficult and sensitive issues
o Closing – easy questions again, often routine,
background
Fentanesh N.(PhD.) 26
Why respondents report questions/events with
less than Perfect Accuracy
o They do not know the information
o They cannot recall it, although they do know it
o They do not understand the question
o They do not want to report the answer in the interview context
Fentanesh N.(PhD.) 27
Pretesting the Questionnaire
o A pre-test is where a questionnaire is tested on a small
sample (5-10%) of respondents before a full-scale study
o Purpose: to identify any problems such as unclear
wording, question variation, meaning, and respondent
interest and attention
Fentanesh N.(PhD.) 28
Issues to be addressed in the pretest
o Is each question measuring what it is intending to
measure?
o Is the wording understood by all respondents, and is
the understanding similar for all respondents?
Fentanesh N.(PhD.) 29
Pretesting the Questionnaire
Fentanesh N.(PhD.) 30
Questionnaire layout
o The questionnaire should be visually easy to read and comprehend
o Lower case letters should be used for texts
o The covering letter
o It is customary for the first few lines of a questionnaire to include:
o –the title of the study and a brief introduction
–the label „confidential‟,
– the respondent‟s serial (identification) number (to preserve
anonymity),
Fentanesh N.(PhD.) 31
Question forms
Structured questionnaires: involve the use of fixed
questions or scales which are presented to respondents in
the same way, with no variation in question wording and
with closed questions
Some structured questionnaires will also include open
ended questions, to enable respondents to reply in their
own words
Fentanesh N.(PhD.) 32
Question forms
Semi structured interviews include fixed questions but
with no, or few, response codes, and are used flexibly, often
in no fixed order, to enable respondents to raise other
relevant issues not covered by the interview schedule
Unstructured interviews are comprised of a checklist of
topics, rather than fixed questions, and there are no pre
codes
The more structured approach is only suitable for topics
where sufficient knowledge exists for largely pre coded
response formats to be developed
Fentanesh N.(PhD.) 33
Data Quality Control Issues
Describe/provide
Operational definitions of crucial concepts
Selection and training of field workers/research staffs
Field testing the research methods and tools (pretest)
Fentanesh N.(PhD.) 34
Bias, Validity , and Reliability
In research bias occurs when systematic error is
introduced into sampling or testing by selecting or
encouraging one answer over others
Validity in data collection means that your findings truly
represent the phenomenon you are claiming to measure
Reliability is also a way of assessing the quality of the
measurement procedure used to collect data in research
In order for the results from a study to be considered
valid, the measurement procedure must first be reliable
Fentanesh N.(PhD.) 35
Assignment 6.
o Prepare appropriate data collection tool for your proposed
research topic?
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Data Analysis and Presentation
Fentanesh N.(PhD.) 37
Data Analysis and Presentation
Types of statistical Software
For data entry:
Epidata
EPI Info
For data analysis
SPSS
SAS
STATA
R software
Fentanesh N.(PhD.) 38
Data management
Data processing refers to:
Data entry into a computer
Data cleaning
Data checks and correction
Variable coding
The aim of this process is to produce a relatively „clean‟
data set
Fentanesh N.(PhD.) 39
Data management cont…
Data Editing
After data collection
Check for an answer code for each variable
Editing for special codes
Missing values occur when measurements were not taken, or respondents
did not answer questions
In general, missing values should not be entered as a „ blank‟, because
some statistical packages interpret blanks as zero
Ideally, a code should be chosen to denote a missing value (e.g. a code „9‟
or ‟99‟
Fentanesh N.(PhD.) 40
Data management cont. …
Data entry
Data entry concerns the transfer of data from a questionnaire to a
computer file
It is converting data into a form that can be read and manipulated
by computers used in quantitative data analysis
Before analysis, data must be checked for errors, variables
requiring coding must be coded, and missing values must be
appropriately addressed
Fentanesh N.(PhD.) 41
Data management cont…
Data Cleaning
Once data have been gathered, they need to be entered
into a computer data file and checked for errors
No matter how carefully the data have been entered some
errors are inevitable
The aim of this process is to produce a clean set of data for
statistical analysis
Fentanesh N.(PhD.) 42
Data management cont…
Data coding
Coding is assigning a separate (non-overlapping) numerical code for
separate answers and missing values
Close-ended: Best to assign numeric codes to each category
Example: Eg. Instead of using „Male‟ and „Female‟ for
Male…………….1
Female……………..2
In general computers are at their best with numbers
Some statistical packages cannot analyze alphabetic codes, some
cannot understand open ended responses
You must translate variables through coding
Fentanesh N.(PhD.) 43
Data management cont…
Data Modification
o Create new variables by:
o Recoding response categories
o Combining several variables that make up a scale (e.g., 9 items
to measure food security )
o Combining several variables to make one new variable (e.g
BMI=weight (kg)/height (m)2
Fentanesh N.(PhD.) 44
Data Analysis and Presentation
Analysis is usually a description of the data for each
variable for all the study units included in the sample
The goal of data analysis is to discover useful information,
suggesting conclusions, and supporting decision-making
It has multiple approaches ranging from descriptive to
inferential analysis
Fentanesh N.(PhD.) 45
Data Analysis and Presentation…
Descriptive analysis: are used to describe the basic
features of the data in a study
What does the data look like
They provide simple summaries about the sample and the
measures
Frequency, proportion/percentage
Table/cross-tabulation
Diagram
Summary measures (e.g mean, median)
Fentanesh N.(PhD.) 46
Inferential statistics
The goal is to make conclusions about a phenomenon
based on observed data
In this way, statistical inference may help the researchers
in suggesting or verifying scientific hypotheses, examines
relationship/differences or decision makers in improving
their decisions
There are many Statistical modes of performing inference
Good statistical inference never move away very far
from the data
Fentanesh N.(PhD.) 47
Choosing Statistical models
The choice of statistical models for the specific data depends
on different properties:
Objective of the study
Study Design
Nature of the variable
What is the nature of the outcome and explanatory variables: is it a
continuous measurement, a count, a proportion, a category, or a time-at-
death?
Distribution of the variable
The nature of the data
The number of group we want to compare
Sample size
Fentanesh N.(PhD.) 48
Statistical model
Or Chi-
Square test
Fentanesh N.(PhD.) 49
Comparing two groups
The outcome variable is continuous (e.g., BMI, weight,
hemoglobin level) and we want to compare means among
two groups
t test (3 types of t test)
One sample t test: Compares the mean of a single group to a
known or hypothesized population mean
E.g: WHO reference mean hemoglobin for non-pregnant women = 12
g/dL
o You collect data from 100 women in Bahir Dar city
o Sample mean hemoglobin = 11.2 g/dL
o Is the mean hemoglobin of these women significantly different from
12 g/dL?
Fentanesh N.(PhD.) 50
Comparing two groups
Independent sample t test: Compares the means of two independent
groups to determine if there is a statistically significant difference
between them
E.g: Mean birth weight of infants born to:
o Mothers who received nutrition education
o Mothers who did not
o Is the mean birth weight significantly different between the two
groups?
Paired sample t test : Compares the means of two related
measurements from the same individuals groups
E.g: Mean weight of women:
Before nutrition intervention
After nutrition intervention
Fentanesh N.(PhD.) 51
Summery table t-test
Type of t test Groups compared Example
One group vs known Mean Hb vs WHO
One-sample
value standard
Independent Two different groups Urban vs rural BMI
Same group measured
Paired Weight before vs after
twice
Fentanesh N.(PhD.) 52
Comparing two groups
Both the outcome variable and explanatory variables are
categorical
Example obesity among age group
Categorical outcome + categorical explanatory variable →
Chi-square test
Fentanesh N.(PhD.) 53
Comparing more than two groups
To compare among more than two groups
o ANOVA
o Example: Weight among mothers age group (<20 years, 20-30,
and >30 years)
Assumption
o The outcome variable is continuous
o The error term is assumed to be normally distributed
o Variance is assumed to be constant
o Factor variable is categorical with more than two groups
Fentanesh N.(PhD.) 54
Hypothesis to be tested
The hypothesis to be tested are
H0: µ 1 = µ 2 = µ 3 =….= µ k
Versus
H1: µ i ≠ µ j , j≠j
The test statistics is F
The tabulated value test of F at α level of significant and
df1 and df2 degree of freedom will be obtained from the
table where
df1= is degree of freedom of the numerator
df2= is degree of freedom of the denominator
Fentanesh N.(PhD.) 55
Hypothesis test
The calculated value of the test statistics can be obtained
from the ANOVA table
Then if Fcal>Ftab then reject the null hypothesis
Otherwise, accept the alternative hypothesis
Fentanesh N.(PhD.) 56
ANOVA-Test
SS (Sum of Squares): Measures the variation.
Treatments SS = variation between groups
Error SS = variation within groups (residual)
DF (Degrees of Freedom):
Treatments df = number of groups − 1 = 3 − 1 = 2
Error df = total observations − number of groups = 15 − 3 = 12
MS (Mean Square): Average variation
MS=SS/DF
Treatments MS = 27.897 ÷ 2 = 13.949
Error MS = 17.452 ÷ 12 = 1.454F
(F-statistic):𝐹=𝑀𝑆Treatments/𝑀𝑆Error=13.949/1.454≈9.59
The test statistic is the F value of 9.59. Using an α of 0.05, we
have F0.05;2,12 = 3.89.
So 9.59> 3.89, we reject the null hypothesis of equal population means
and conclude that there is a (statistically) significant difference among
the population mean
Fentanesh N.(PhD.) 57
Statistical model
Linear regression predicts a continuous outcome: e.g., weight,
blood pressure.
simple linear regression
yi = β0 + β1xi + ei
Where;
• yi –is the outcome we are trying to explain
• β0 – intercept. the expected value of yi when xi=0i
• β1– slope coefficient. It shows the change yi for a one-unit
increase in xi. xi – independent variable. It’s the variable we
believe has an effect on yi.
• ei – Terror term (residual). It represents the difference between the
observed value yi and the value predicted by the model. It
captures randomness, measurement error, or other factors
affecting yi
Explanation: How does (the mean of) y change with x ?
Prediction: What is the expected value of y, and how much
variation is there in the value of y, at a particular value x ?
Fentanesh N.(PhD.) 58
Statistical model
Multiple linear regression
yi = β0 + β1xi + β2zi + ei
Explanation: How does (the mean of) y change with x and z?
Prediction: What is the expected value of y, and how
much variation is there in the value of y, at a particular
combination of x and z?
Fentanesh N.(PhD.) 59
Logistic regression
Outcome variable: categorical
Research question: Prediction
Statistical model: Logistic regression
Logistic regression predicts a probability of a categorical
outcome: e.g., probability of a child being malnourished
(yes/no), probability of disease (1/0). Where P= Probability
Simple logistic regression that the outcome = 1
(event occurs)
α=Intercept (log-odds
when x = 0)
Β1=Effect of predictor x
on the log-odds of the
outcome
X= Predictor variable
Fentanesh N.(PhD.) 60
Logistic Regression
Fentanesh N.(PhD.) 61
Extension of logistic regression
When the assumption of ordinary logistic regression
didn’t work, we use its extensions
Multinomial logistic regression
Ordinal logistic regression
Mixed effect logistic regression
Generalized linear mixed model
Generalized estimating Equation
Fentanesh N.(PhD.) 62
Poisson regression
• Outcome variable: Count (discrete data with non-
negative integer values)
• Explanatory variables, X = (X1, X2, … Xk), can be
continuous or a combination of continuous and
categorical variables can be all categorical.
• Research question: Prediction
•
Assumption: Mean=Variance
Fentanesh N.(PhD.) 63
Poisson regression
• Poisson Regression helps us analyze count data by allowing us
to determine which explanatory variables (X values) have an
effect on a given response variable (Y value, the count)
• Overall goodness of fit statistics of the model are the same as
for any GLM:
o Pearson chi square statistic
o Deviance
o Likelihood ratio test, and statistic
Fentanesh N.(PhD.) 64
Hypothesis test
• The hypothesis to be tested are
•
• We use 95% CI and check whether the interval
includes one
• We can also use p value whether it is lower than
0.05
Fentanesh N.(PhD.) 65
Survival Analysis
• Outcome variable: time to event
• The time from entry into a study until a subject has a particular
outcome
• Example: time from entering a study until death, recovery, or
any other event of interest
• Censoring: Subjects are said to be censored if they are lost to
follow up or drop out of the study, or if the study ends before
they die or have an outcome of interest
• Statistical approach: survival analysis
o Notation:
• T = survival time of a selected individual
• t = a specific point in time.
• (S t ) = Survival Function
• h (t) = instantaneous failure rate among survivors at time t also called hazard
function
Fentanesh N.(PhD.) 66
• The goal of survival analysis is to estimate and
compare survival experiences of different groups
• The survival function can be formulated as
• Life table is the probability calculated from the survival function
• It takes censoring in to account to compute probabilities
of the life table
Fentanesh N.(PhD.) 67
•
Data analysis using SPSS
Fentanesh N.(PhD.) 68
Analyze: Descriptive Data Analysis
Analyze
Fentanesh N.(PhD.) 69
Chi-square test
Fentanesh N.(PhD.) 70
Outputs
Chi-Square Tests
Value df Asymp. Sig. (2-
sided)
a
Pearson Chi-Square 3869.306 6 .000
Likelihood Ratio 3896.071 6 .000
Linear-by-Linear Association 1031.032 1 .000
N of Valid Cases 15683
a. 0 cells (0.0%) have expected count less than 5. The minimum expected
count is 27.98.
Fentanesh N.(PhD.) 71
Independent sample t-test
• To compare the outcome variable (continuous)
among two levels of factor variable
• Eg. Comparing birth weight among sex of the child
Outcome
variable
(Independent
(group variable)
Level values
Fentanesh N.(PhD.) 72
output
Fentanesh N.(PhD.) 73
Analysis of Variance (ANOVA)
• Analysis of Variance (ANOVA) is used to compare
between groups if more than two
• AnalyzeCompare means One way ANOVA
Dependent variable
Fentanesh N.(PhD.)
Factor Variable 74
Fentanesh N.(PhD.) 75
Linear regression
Dependent variable
Fentanesh N.(PhD.) Independent variables 76
output
Fentanesh N.(PhD.) 77
Logistic regression
Now, the outcome variable is categorical
If the categorical outcome variable is binary (only 2
possible values), then binary logistic regression is
fitted
If the outcome variable has more than two levels of
nominal, then multinomial logistic regression
If the outcome variable has ordered levels, then
ordinal logistic regression is fitted
Fentanesh N.(PhD.) 78
Binary logistic regression
Dependent variable: Birth weight ( normal=1, underweight
=0)
Explanatory variable : Age of mother, sex of the child, parity,
marital status, and so on
Bivariate logistic regression : Fitting logistic regression for
each explanatory variable
Odds ratio, 95% CI and p value will be computed
• A variable will be taken to multivariable logistic regression if
p value is less than 20% (0.2)
Fentanesh N.(PhD.) 79
Binary logistic regression
o Reference level should be defined by clicking “categorical” and
choose either last or first We can change the
reference level by
choosing either last or
first, then click “change”
Fentanesh N.(PhD.) 80
Binary logistic regression
Fentanesh N.(PhD.) 81
Bivariate logistic regression
First run the frequency and check the distribution of
each explanatory variable over the dependent
variable
This tells us whether the Variable is eligible for regression
Example: dependent variable Anemia independent Education level
anemia_ordinal
Frequen Percent Valid Cumulative
cy Percent Percent
.00 10560 67.3 72.9 72.9
Valid 1.00 3929 25.1 27.1 100.0
Total 14489 92.4 100.0
Missin
System 1194 7.6
g
Total 15683 100.0
Categorical Variables Codings
Frequency Parameter coding
Dependent Variable Encoding
(1) (2) (3)
Original Value Internal Value
No education 6596 1.000 .000 .000
No 0 Primary 4862 .000 1.000 .000
Yes 1
Highest educational level
Secondary 2003 .000 .000 1.000
Higher 1028 .000 .000 .000
Fentanesh N.(PhD.) 82
Odd
ratio
Variables in the Equation
B S.E. Wald df Sig. Exp(B) 95% [Link] EXP(B)
Lower Upper
V106 318.800 3 .000
V106(1) 1.059 .091 136.113 1 .000 2.882 2.413 3.443
Step 1a V106(2) .539 .093 33.366 1 .000 1.714 1.428 2.058
V106(3) .295 .104 8.084 1 .004 1.343 1.096 1.646
Constant -1.721 .087 391.901 1 .000 .179
a. Variable(s) entered on step 1: V106.
P-value
As we see from p value (<0.05) or 95% CI (not include 1), The Odds ratio here is
unadjusted , which may be affected by confounding variables
However, in the baivariate analysis we only focus on 20% p value
Fentanesh N.(PhD.) 83
Multivariable logistic regression
Now we are going to include all potential explanatory variables
in the model simultaneously
Categorical Variables Codings
Frequenc Parameter coding
y (1) (2) (3) (4) (5) (6)
15-19 3172 1.000 .000 .000 .000 .000 .000
20-24 2667 .000 1.000 .000 .000 .000 .000
25-29 2652 .000 .000 1.000 .000 .000 .000
Age in 5-year groups 30-34 2091 .000 .000 .000 1.000 .000 .000
35-39 1772 .000 .000 .000 .000 1.000 .000
Independent 40-44 1212 .000 .000 .000 .000 .000 1.000
variables 45-49
Poorest 3649
923 .000
1.000
.000
.000
.000
.000
.000
.000
.000 .000
with codes Poorer 1957 .000 1.000 .000 .000
Wealth index
used for the combined Middle 1903 .000 .000 1.000 .000
analysis Richer
Richest
1948
5032
.000
.000
.000
.000
.000
.000
1.000
.000
No
6596 1.000 .000 .000
education
Highest educational
Primary 4862 .000 1.000 .000
level
Secondary 2003 .000 .000 1.000
Higher 1028 .000 .000 .000
No or
13436 1.000
Currently pregnant unsure
Yes 1053 .000
Type of place of Urban 4709 1.000
Rural 9780 .000
Fentanesh N.(PhD.)
residence
84
Multivariable logistic regression AOR
B S.E. Wald df Sig. Exp(B) 95% [Link] EXP(B)
Lower Upper
V106 67.740 3 .000
V106(1) .674 .102 43.908 1 .000 1.962 1.607 2.394
V106(2) .370 .099 14.068 1 .000 1.448 1.193 1.758
V106(3) .256 .106 5.858 1 .016 1.291 1.050 1.588
V013 15.306 6 .018
V013(1) .191 .093 4.176 1 .041 1.210 1.008 1.453
V013(2) .301 .093 10.502 1 .001 1.351 1.126 1.621
V013(3) .294 .091 10.502 1 .001 1.342 1.123 1.604
V013(4) .288 .093 9.712 1 .002 1.334 1.113 1.600
Step 1a V013(5) .223 .095 5.534 1 .019 1.250 1.038 1.506
V013(6) .190 .102 3.491 1 .062 1.210 .991 1.477
V102(1) .070 .080 .760 1 .383 1.073 .916 1.255
V190 256.659 4 .000
V190(1) .895 .085 110.572 1 .000 2.448 2.072 2.893
V190(2) .328 .093 12.524 1 .000 1.388 1.157 1.664
V190(3) .238 .093 6.507 1 .011 1.268 1.057 1.523
V190(4) .065 .092 .494 1 .482 1.067 .891 1.278
V213(1) -.343 .069 24.395 1 .000 .710 .619 .813
Constant -1.757 .158 123.112 1 .000 .172
a. Variable(s) entered on step 1: V106, V013, V102, V190, V213.
Hosmer and Lemeshow Test
Step Chi-square df Sig.
P-value
1 8.199 8 .414
Goodness of fit test of the model can be checked
Fentanesh N.(PhD.)
using Hosmer and Lemeshow test (higher p value 85
good model)
Assignment 7
Choose appropriate analysis methods for your
proposed research
Explain your reason for choosing the model
Fentanesh N.(PhD.) 86
Research Ethics
Fentanesh N.(PhD.) 87
Introduction
Ethics:- moral principles of right and wrong
A set of standards that includes both prohibitions
against and prescriptions for specific kinds of behavior
in research
o It is not absolute; may vary by person, by time, by place
o involves a balance between and within principles and
practices
Two things to be consider about the ethics in the
conduct of research
o Basic ethical principles underlying research
o Formulation and approval of ethical procedures for conducting
research
Fentanesh N.(PhD.) 88
Research must respect
Dignity
Safety
Rights of research participants
Fentanesh N.(PhD.) 89
Three Broad Areas of Ethical Concerns
Ethics of research design, data collection and
analysis and results reporting
Responsibility to society and groups in society
regarding benefits and risks of human research
o Has a responsibility to assess the possible uses of scientific
findings, to promote their beneficial application, and to
speak out against their destructive application
Recruitment and treatment of research participants
Fentanesh N.(PhD.) 90
Historical Development of Medical Ethical
Tuskegee experiment on syphilis (1932 -72)
Studied the natural history of syphilis in 400 African
American males
Motivated by the concern that syphilis might be less
harmful in this group
Men afflicted with syphilis to go untreated for a
period of 40 years
Finally
o 28 persons had died from the disease,
o 100 persons had died from related diseases
Fentanesh N.(PhD.) 91
Historical Development …
Nazi experiments (1933–45)
Was the first among all evil human experimentation
During World War II, a number of German physicians
conducted painful and often deadly experiments on
thousands of prisoners without their permission
Considering the inhumane conditions, lack of consent,
and questionable research standards, modern scientists
overwhelmingly reject the use of results from
experiments
Seventy medical researches were conducted in Nazi
concentration camps
including:
High-Altitude,
Freezing experiment
Head injury experiment
Fentanesh N.(PhD.) 92
Historical Development …
Cold War Human Radiation Experiment (1944-74)
Over 4000 secret and classified radiation
experiments by
Atomic Energy Commission (AEC)
other government agencies
believing low dose radiation was not harmful
ignoring
increased risk of cancer
heart disease
neurological disorders
immune system disease
reproductive abnormalities
birth defects, and genetic mutations
Fentanesh N.(PhD.) 93
San Antonio Contraceptive Study (1970)
o Involved randomizing double-blind subjects
between active and placebos contraceptive pills to
identify the side effects attributed to oral
contraceptives
o The women were not informed as they were the
subjects of this type of research
o There were high numbers of unplanned
pregnancies in the placebo group
Fentanesh N.(PhD.) 94
Response to Research Abuses
Since 1945, Various codes have been adopted by
different organizations
The best known are:
1. Nuremberg Code of 1947
2. Universal Declaration of Human Rights (1948)
3. Declaration of Helsinki (1964)
4. National research act (1974)
5. Belmont Report(1979)
Fentanesh N.(PhD.) 95
1, Nuremberg Doctors Trial
led to the formulation of the Nuremburg Code (1948)
23 persons were charged
Among these, 7 were sentenced to death by hanging, 9
were given prison terms, and 7 were found not guilty
It outlined ethical principles required for research
Now regarded as a milestone toward the
establishment of a permanent international court
Fentanesh N.(PhD.) 96
2. Universal Declaration of Human Rights (1948)
The United Nations (UN) came into being in 1945 by
51 countries
It is the most universal human rights document in
existence
Consists of 30 articles
Subsequent international agreements
Regional human right instruments
National constitutions and law
Ethiopia becomes a member in 1945
Fentanesh N.(PhD.) 97
3. Declaration of Helsinki (1964)
World Medical Association drafted in 1964
Has been revised 7 times and the current on is in 2013
It consists of 2 preamble and 35 general principles
(37)
Developed on the Nuremberg Code
It adds three key points on NCode:
Higher priority for the subject than society
Every subject should get the best known treatment
independent review of all human subject research
It is the origin of Institutional Review Board (IRB).
Fentanesh N.(PhD.) 98
4. National Research Act (1974)
The Commission had four goals that it needed to analyze
1. Boundaries between biomedical and behavioral research
2. Assessing the risks and benefits of the appropriateness of
research
3. Determining appropriate guidelines for how human subjects
can be chosen for the participation of research
4. Defining what informed consent is in each research setting
Recommendation for Belmont report
Fentanesh N.(PhD.) 99
5. Belmont Report
Ethical Principles and Guidelines for the protection of
Human Subjects of Research
Attempts to summarizes the basic ethical principles
identified by the National Commission for the Protection
of Human Subjects of Biomedical and Behavioral
Research
Consists three ethical principles:
• Respect for person
• Beneficence
• Justice
Fentanesh N.(PhD.) 100
Ethics in Health Research
Health research that uses human being as a
subject has benefits and risks to the society
It is beneficial to the society as it ensures good
health
It is risk in that the human participant of
research may be exposed to undesirable
consequences
In order to strike a balance between these two
conflicting societal interests, countries have
developed laws and ethics to promote health
research
Fentanesh N.(PhD.) 101
Ethics in Health…
Risks in general fall into three categories
Invasion of Privacy
Breach of Confidentiality
Study Procedures
When assessing risk associated with participation
consider
The Probability of Harm
The Magnitude of Such Harm
There are three widely recognized principles
Respect for Persons
Beneficence/Non-Maleficence
Justice/Non-Exploitation
Fentanesh N.(PhD.) 102
Respect for Persons
Autonomy: Each individual:
o Is unique and free
o Has the right and capacity to decide
o Has value and dignity
o Has the right to informed consent
Protection for vulnerable persons
o Special protections for those whose decision making capacity is impaired or
diminished
Application: Informed Consent
o The consent process must include :
o Information
o Comprehension, and
o Voluntary participation
Fentanesh N.(PhD.) 103
Beneficence
Protection of the study participants is the most important
responsibility of the researcher
Researchers must:
o Protect the physical, mental and social well-being
o Minimizes physical and social risks
o Maximize the possible benefits
o Retain the community perspective
Application: Assessment of risks and benefits
o The nature and scope of risks and benefits must be assessed in a
systematic way
Fentanesh N.(PhD.) 104
Justice
The principle that calls for fairness
Research must: 5 formulations to each person:
1. an equal share
2. according to individual need
3. according to individual effort
4. according to societal contribution
5. according to merit
Application: Selection of participants
1. There must be fair procedures and outcomes in the selection
of research participants
Fentanesh N.(PhD.) 105
Informed consent
Informed Consent is a voluntary agreement to
participate in research
Elements should be included in an informed
consent?
o Purpose of the research
o Procedures involved in the research
o Alternatives to participation
o All foreseeable risks and discomforts to the subject
o Benefits of the research to society and possibly to the individual
human subject
o Length of time the subject is expected to participate
o Person to contact for answers to questions or in the event of a
research-related
o Right to confidentiality and right to withdraw from the study at any
time without any consequences
Fentanesh N.(PhD.) 106
Informed consent
The consent form need to include the following
Identification of the researcher
Identification of the sponsoring institution
Indication of how the participants were selected
Identification of the purpose of the research
Fentanesh N.(PhD.) 107
Consent by surrogates cont…
Parents are considered surrogates for their minor
children
Spouses for one another
Adult children for parents when parents are
lacking
Adult grand children for grand parents
Fentanesh N.(PhD.) 108
Confidentiality
o Confidentiality is necessary in diagnostic,
therapeutic and research context
o Confidential information is both private and
voluntarily imparted in confidence and trust
o If research subject authorizes release of
the information to others, then there is no
violation of rights or confidentiality
Fentanesh N.(PhD.) 109
Confidentiality cont..
o Research may involve collecting and storing data relating
to individuals and groups
o Investigators should make arrangements for protecting
the confidentiality of such data by:
o Omitting information that might lead to identification
of individual subjects
o limiting access to the data, or by other means
o When personal identifiers remain on records used for a
study, investigators should explain why this is necessary
and how confidentiality will be protected
Fentanesh N.(PhD.) 110
Dissemination and Utilization of Results
Briefly describe the dissemination plan
o Feedback to the community
o Feedback to local authorities
o Identify relevant agencies that need to be informed
o Scientific publication
o Presentation in meetings/conferences
Briefly describe how the study results can be best
translated into application
Fentanesh N.(PhD.) 111
Work plan
Work plan summarizes (in a table, chart, graph) the
various components of a research project and how they
fit together.
Includes:
o Tasks to be performed
o When the task will be performed
o Who will perform the task (identify human resource needed for
each task)
o Number of staff needed to perform the task
Fentanesh N.(PhD.) 112
Work plan cont..
A work plan can serve as:
o A tool in planning the details of the project
activities and later the project funds
o A visual outline or illustration of the sequence of
the project operations
o A management tool for the principal investigator
and/or members of his/her team, showing what
tasks and activities are planned, their timing, and
when various members will be involved in the
tasks
Fentanesh N.(PhD.) 113
Work plan cont..
Ways of presenting a work plan
o Work schedule
o GANTT chart
The Work Schedule
o Is a table
o Summarizes:
• tasks to be performed
• duration of each activity, and
• staff responsible.
Fentanesh N.(PhD.) 114
Work plan cont..
The GANTT Chart
o Represents graphically the order in which various
tasks must be completed and their duration of
activity
• A typical Gantt chart includes the following
information:
o The tasks to be performed
o Who is responsible for each task; and
o The time each task is expected to take
o The length of each task is shown by a bar that
extends over the number of days, weeks or months
the task is expected to take.
Fentanesh N.(PhD.) 115
GANTT CHART
Fentanesh N.(PhD.) 116
Budget
How should a budget be prepared?
It is necessary to use the work plan as a starting
point
Specify, for each activity in the work plan, what
resources are required
Determine for each resource needed the unit
cost and the total cost
The budget for the fieldwork component of the
work plan will include funds for personnel,
transport and supplies
Fentanesh N.(PhD.) 117
Budget cont…
Budget preparation
o Include a 5%-10% contingency fund
o If inclusion of a contingency fund is not
allowed, an alternative is to slightly over-
budget in major categories.
o ¨Do not box yourself in too tightly with
very detailed categories and amounts,
especially if regulations do not allow
adjustments afterwards
o.
Fentanesh N.(PhD.) 118
Budget cont…
Budget justification
o It is not sufficient to present a budget without
explanation
o The budget justification follows the budget as an
explanatory note justifying briefly why the various
items in the budget are required
o Make sure you give clear explanations concerning
why items that may seem questionable or that are
particularly costly are needed and discuss how
complicated expenses have been calculated
o If a strong budget justification has been prepared, it
is less likely that essential items will be cut during
proposal review
Fentanesh N.(PhD.) 119
References
Methods of citations
1) Vancouver system
For an article the following information should be
noted:
Author(s)’ Surname followed by initials. Title of article. Name
of Journal. Year, Volume(number): page numbers of article.
Example: Tiruneh FN, Individual-level and community-level
determinants of cervical cancer screening among Kenyan
women: a multilevel analysis of a Nationwide survey. BMC
women's health. 2017 Dec;17(1):109.
Fentanesh N.(PhD.) 120
References cont..
2)The Harvard System
In other journals and books it is common to put the year,
between brackets, straight after the name of the author(s)
This is called the Harvard system.
Name of the author(s) (year). Title. Place of Publication:
Publisher
Example: Dagne, S., 2019. Assessment of breast cancer
treatment outcome at Tikur Anbessa Specialized Hospital
Adult Oncology Unit, Addis Ababa, Ethiopia. European
Journal of Oncology Pharmacy, 2(2), p.e13..
There are more systems in use for referencing to
literature.
Always carefully look what system is used in the journal
you are submitting an article to and follow it
systematically.
Fentanesh N.(PhD.) 121
Annex
• Include in the appendices of your proposal any additional
information you think might be helpful to a proposal
reviewer.
• For example, include:
o The study questionnaire if you have it.
o The consent form.
o A copy of the approval from the Institutional Review Board.
Fentanesh N.(PhD.) 122
Assignment 8.
• Write
o Ethical consideration
o Dissemination of result
o Work plan
o Budget
o Reference
For your proposed research
Fentanesh N.(PhD.) 123
Scientific Paper Writing
124
Components of scientific Paper
Title
Abstract
Introduction
Objective
Methods
Results
Discussion
Conclusion
Reference
Acknowledgement
Annex
125
Cover page
Should contain:
– the title
– name of the authors with their titles, positions and their
affiliation
– the month and year
126
Title
• The title is the most important part of the paper because it
connects your research with readers
• Few words that can adequately describe the contents of the
paper
• Purpose: To provide a brief , informative summary that
will attract your target audience
127
Abstract
A summary of the paper, giving the reader a preview of
what's to come.
Writing abstracts demands a systematic reflection and is
time consuming
Allows readers to quickly scan the large scientific
literature, and decide which articles they want to read in
depth
Purpose : to help readers decide whether to read the full
article
Often 250-300 words, depending on the criteria set by
journal/school
128
Components of the abstract
• Background: Brief description of the problem (Why this
study was needed)
– Main objectives of the study
• Methods: Place of the study; type of the study and
methods/analysis used
• Results: Main findings
• Discussion: Conclusion and recommendations
129
Abstract cont…
Abstract can be structured or unstructured (depends on
the instruction of the journal/school)
Remember that only few words are allowed to be included
in the abstract
Emphasize on what is new and useful
130
An Abstract should
State the principal objectives and scope of the investigation
Describe methods employed
Summarize the results
State principal conclusions
Provide a balanced summary of what was done and found.
Common Mistakes
Too much background or methods information
References to other literature
Abbreviations or acronyms
131
Example
132
Introduction (why did you start?)
The introduction should prepare readers to understand why and
how you did your research and tell them what to expect
Purpose: to explain why your study is needed
When using abbreviations, always define them the first time
they are used.
Introduction should always
Provide the background/rationale
Review pertinent literature
Objectives are usually the last part of the introduction
133
Components of introduction
• Background statement: orient readers to the area of
interest and give them the background they need to
understand the problem.
• Problem statement:
– describe the nature and importance of the problem
– What do we need to learn
• Literature review: What do we already know
• Justification/activity statement:
– What will we learn from the study
– What you did to address the problem;
– How you studied the problem,
– Why you approached the problem the way you did.
134
The purpose of the study
o The purpose of the study must be clear.
o The purpose is never use “to study”, “to evaluate”, “to
compare” or “to investigate”,
o Instead, the purpose is “to determine”, “to verify”, “to
describe” or “to select”, which refer specifically to what
you sought to accomplish with the research
135
Methods (what did you do)
Purpose →to describe how you collected, organized and
analyzed data that are relevant to answering your research
question
Organize into logical subsections that illustrate the steps
you took to collect, organize and analyze the data
Describe what you did in your research
Describe original methods in detail; otherwise give
references
136
Possible subsection of the methods
o Study design
o Study area and period
o Study population
o Sample size and sampling method(s)
o Variables of the study
o Data analysis
o Ethical considerations
137
Possible subsection of the methods
o Study area and period: Location(s) (number of health
facilities, schools) , relevant dates,
o Give the dates of the data collection period and places
o Reporting possibly relevant events and can provide
additional information, such as how long it took to
reach the targeted sample size.
138
Possible subsection of the methods
o Study population: Eligibility criteria, methods of selection
o Sample size and sampling method
– The nature and size of the sample and how it was selected are critical in
any research study
– The sample has to be large enough to provide estimates with enough
accuracy to be useful
– Larger samples provide more precise estimates in the form of narrower
confidence intervals.
– P values, essentially measures of chance as an explanation for the
outcome and that have no biological meaning
139
Possible subsection of the methods
o Variables of the study
o Clearly identify your explanatory/independent and
outcome/dependent variables
o Operationally define (measure) outcome, explanatory,
potential confounders, and effect modifiers
o Data collection procedures: use appropriate data collection
tool/s
140
Possible subsection of the methods
• Data analysis
– Explain how variables were handled in the analysis, i.e. continuous,
categorical, if so what were the categories
– Statistical methods you used
• Ethical considerations
– Informed consent
– Respect for anonymity and confidentiality
– Respect for privacy
– Approval of ethical issues
141
Results (what did you find)
Purpose →to describe the results of data analysis that are
relevant to the study
Systematic presentation of your findings in relation to the
research objective is crucial
Present the results for the primary endpoint/outcome first
Results may presented with tables and figures, can also with
texts
Result section should include:
Characteristics of study participants (usually Table 1)
Number of missing
Main results
Additional analyses, such as stratified analyses, interactions,
142
Sequence of presentation of findings
The 1st section is usually description of the study
population
Provide information on the problem you studied
(prevalence, distribution, characteristics)
In analytic study, the degree to which different
independent variables influence the problem
143
Use of tables & figures
o Tables & figures need numbers & clear title
o Include only those tables & figures that present main
findings & need more elaborate discussion in the text
o Use tables to highlight individual values
o Use figures to highlight trends/relationships
o In tables, keep lines to a minimum;
o Use footnotes to clarify points of potential ambiguity
o Define abbreviations, even if they have been defined in the
manuscript.
144
Text
o Describe what you found
o Present results in a logical sequence
o Less is often better ( a table or figure is worth thousand
words)
o Make sure all numbers in text are consistent with
tables/figures
145
Discussion (What does it mean)
This is your moment to shine and show your knowledge of
the prior literature.
Summarize key results in reference to study objectives
Summarize the study and the main findings in a few
sentences, instead of repeating individual results
Interpretation
Give an attention overall interpretation of results
considering the objectives, limitations, results from
similar studies, and other relevant evidence
Mention the significance of your study
146
Guidelines for constructing the discussion
Focus on the main results
Emphasize on what is new or different
Interpret the result in context of literature /compare
Interpret your results and suggest an explanation(s) for them
Describe why you think you found what you found or did not find
Critique your study (Strengths and Limitations)
Potential bias
Potential imprecision
147
Discussion, con‟t.
Whenever discussing your limitations try to put a positive
spin on what you have to say.
For example, Measures of height and weight were
self-report, likely resulting in non-differential
misclassification. Nonetheless, such misclassification
was not an important cause of concern as some
found self-reported height and weight to be
reasonably accurate (citation)
Give directions for Future researches
Study strengths
148
Conclusions & recommendations
o Conclusions should be short, as they have been elaborately
discussed in the discussion section
o Listing your conclusions will force you to be specific about
what you found
o Every conclusion needs to be supported with the data
presented in the results
o Recommendations are usually placed in roughly the same
sequence as the conclusion
149
Conclusions & recommendations
Recommendations may at the same time be summarized
according to the groups towards which they are directed
Speculate on your findings.
What are their implications for public health,
– What are the policy implications?
150
References
• Use sofwares like Endnote for citations.
• Reference style is dependent on the journal/school where
you want to submit your manuscript
151
Annex
• Findings which are less important to be presented in the
main section of the paper will be presented this section
152
The End. Thank You!
153