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Scripts

This document provides a list of five family-friendly movies suitable for a cozy night in, highlighting their themes and appeal for both kids and adults. Additionally, it discusses troubleshooting tips for R package installation issues, scheduling optimization problems, and the use of APIs for species recognition in iNaturalist and PlantNet. It includes code examples for scheduling and using the PlantNet API for plant identification.

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sbenateau
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0% found this document useful (0 votes)
6 views13 pages

Scripts

This document provides a list of five family-friendly movies suitable for a cozy night in, highlighting their themes and appeal for both kids and adults. Additionally, it discusses troubleshooting tips for R package installation issues, scheduling optimization problems, and the use of APIs for species recognition in iNaturalist and PlantNet. It includes code examples for scheduling and using the PlantNet API for plant identification.

Uploaded by

sbenateau
Copyright
© All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd

Here are 5 family-friendly movies that are perfect for a cozy night at home — fun for kids and

enjoyable for adults too:

1. Paddington 2 (2017)
Rated PG
A heartfelt, beautifully crafted sequel that's even better than the original. Paddington’s charm and
kindness bring warmth and laughs for all ages.

2. Luca (2021)
Rated PG – Disney/Pixar
A sweet coming-of-age tale set in a seaside Italian village. It's about friendship, adventure, and
accepting who you are — with gorgeous animation.

3. The Mitchells vs. The Machines (2021)


Rated PG – Netflix
A hilarious, action-packed animated film about a quirky family battling a robot apocalypse. Tons of
humor, energy, and heart.

4. Encanto (2021)
Rated PG – Disney
A vibrant musical about a magical family in Colombia. Great songs, stunning visuals, and an
uplifting message about self-worth and family dynamics.

5. Night at the Museum (2006)


Rated PG
A fun live-action adventure where museum exhibits come to life. Engaging for kids, with humor
and history mixed in for adults.

Want suggestions based on a particular age range, genre, or streaming service?

This error indicates that the R package installation from GitHub failed due to a corrupted
[Link] file within your R environment, likely related to your renv setup. The errors such as:
lazy-load database .../[Link]' is corrupt
internal error 1 in R_decompress1 with libdeflate
suggest that the database used to "lazy load" the curl package is broken, possibly due to a failed
or interrupted installation or a corrupted file on disk.
🔧 Recommended Fixes:
✅ 1. Delete and Reinstall the Corrupt Package
The most direct fix is to delete the corrupted curl package and reinstall it.
unlink("/home/simon/github/shiny/spipoll_explorer/renv/library/linux-ubuntu-
noble/R-4.4/x86_64-pc-linux-gnu/curl", recursive = TRUE)
renv::install("curl")
Then re-try installing your GitHub package.

✅ 2. Rebuild the Environment Cleanly


If multiple packages may be corrupted, a full rebuild may be safest:
# Remove the local renv library (be careful with this)
unlink("renv/library", recursive = TRUE)
# Reinstall the environment from lockfile
renv::restore()

✅ 3. Clear Downloaded Package Caches (Optional)


If the downloaded tarball is corrupted:
renv::clean()
This will offer to remove cached packages and temp files.

⚠️ Bonus Tips:
• This kind of corruption can happen if an install was interrupted (e.g., a power outage,
force-quit).
• Make sure you have sufficient disk space and memory.
• If using parallel install tools (like pak or jobs in renv), try disabling concurrency.

Let me know if you'd like help crafting a cleanup script or automating recovery for your project.

You’re describing a scheduling optimization problem, sometimes called a meeting scheduling


problem with shared participants.
It’s tricky because:
• Each group has a set of people.
• A person can belong to multiple groups.
• Meetings have different durations.
• Meetings can’t overlap if they share participants.
• You want to minimize the total schedule length (or make it as efficient as possible).
There isn’t a ready-made "app" that perfectly solves this (most calendar apps won’t optimize across
groups automatically), but there are good ways to handle it:

1. Existing Apps / Tools


• Doodle / Calendly → Good for finding common availability, but won’t optimize multiple
meetings with overlaps.
• Microsoft Outlook / Google Calendar → Can show conflicts, but not solve them.
• Specialized scheduling software (e.g., OptaPlanner, Schedule Planner) → Can handle
optimization, but may require setup.

2. Code-Based Solution
If you’re comfortable coding, you can model this as a constraint optimization problem and solve
it using libraries such as:
• Google OR-Tools → Free and powerful, great for scheduling.
• Python PuLP / Pyomo → Linear programming approach.
Example idea in Python with OR-Tools:
from [Link] import cp_model
# Example: 3 meetings with participants
meetings = {
"A": {"duration": 2, "participants": ["Alice", "Bob"]},
"B": {"duration": 1, "participants": ["Bob", "Charlie"]},
"C": {"duration": 2, "participants": ["Alice"]}
}
model = cp_model.CpModel()
# Create start time variables for each meeting
start_times = {m: [Link](0, 10, f"start_{m}") for m in meetings}
end_times = {m: [Link](0, 10, f"end_{m}") for m in meetings}
# Add duration constraints
for m, data in [Link]():
[Link](end_times[m] == start_times[m] + data["duration"])
# Prevent overlapping if participants overlap
for m1, d1 in [Link]():
for m2, d2 in [Link]():
if m1 < m2 and set(d1["participants"]) & set(d2["participants"]):
# Either m1 ends before m2 starts, or vice versa
[Link](end_times[m1] <= start_times[m2]).OnlyEnforceIf(
[Link](f"{m1}_before_{m2}")
)
[Link](end_times[m2] <= start_times[m1]).OnlyEnforceIf(
[Link](f"{m2}_before_{m1}")
)
# Minimize total time span
horizon = [Link](0, 100, "horizon")
[Link](horizon, list(end_times.values()))
[Link](horizon)
# Solve
solver = cp_model.CpSolver()
[Link](model)
# Print schedule
for m in meetings:
print(f"Meeting {m}: {[Link](start_times[m])} -
{[Link](end_times[m])}")
print("Total duration:", [Link](horizon))
This code:
• Assigns start times to each meeting.
• Makes sure no person is double-booked.
• Minimizes the total schedule length.

✅ So yes:
• If you want something ready-to-use, try Clockwise or OptaPlanner.
• If you’re comfortable coding, Google OR-Tools is your best bet.

Do you want me to help you turn your specific list of groups and people into a working
scheduling script (so you can just feed in your data and get a schedule)?
I get Error in [Link](x = X_train, y = y_train, ntree = 100, importance = TRUE) :
length of response must be the same as predictors

That error usually happens in R when training a random forest (randomForest package), and it
means that your response variable (y_train) does not have the same number of rows
(observations) as your predictor matrix (X_train).

Here are the most common causes and fixes:

🔍 Common Causes
1. Mismatched dimensions
• nrow(X_train) ≠ length(y_train)
• Example: You subset X_train but forgot to subset y_train the same way.
2. Factor/vector alignment issues
• If y_train is a factor, sometimes dropping rows from X_train but not from
y_train causes mismatches.
3. Data frame vs. matrix confusion
• X_train should be a [Link] or matrix with rows = samples.
• y_train should be a vector (numeric or factor) with length equal to
nrow(X_train).
4. NA values removed differently
• If you used [Link]() on X_train or y_train separately, one of them may
have fewer rows.
✅ How to Debug
Check sizes:
nrow(X_train)
length(y_train)
Check alignment:
head(rownames(X_train))
head(names(y_train)) # if named
If using a data frame:
str(X_train)
str(y_train)

✅ How to Fix
1. Ensure equal lengths

y_train <- y_train[1:nrow(X_train)]


2. **Recombine before splitting**
Better practice: keep predictors and response together, then split.
```r
df <- [Link](X, y)
train_idx <- sample(seq_len(nrow(df)), size = 0.7*nrow(df))
X_train <- df[train_idx, -ncol(df)]
y_train <- df[train_idx, ncol(df)]
3. Check factor response
If it’s classification, make sure:

y_train <- [Link](y_train)

⚡```rQuick test:
---

randomForest(x = X_train, y = y_train, ntree = 100, importance = TRUE)


should work once nrow(X_train) == length(y_train).

👉 Do you want to paste the outputs of


nrow(X_train)
length(y_train)
so I can pinpoint the mismatch for you?
Existe-t-il une api pour utiliser la reconnaissance d'espèce de inaturalist ?

Oui — mais c’est un peu compliqué. iNaturalist propose une API REST publique pour accéder à
ses données (observations, taxons, identifications, etc.).
Cependant, l’API de reconnaissance visuelle (computer vision) — c’est-à-dire l’endpoint qui,
donné une image, renvoie une ou plusieurs suggestions d’espèces — n’est pas officiellement
exposée au grand public.
Voici ce que j’ai pu trouver comme détails :
✅ Ce que l’API publique peut faire
L’API d’iNaturalist permet de :
• Rechercher des observations (par lieu, par taxon, par date, etc.).
• Obtenir des informations sur les taxons (espèces, genres, familles, etc.).
• Obtenir des identifications, des comptes, des statistiques liées aux identifications.
Mais aucun endpoint public documenté ne permet de soumettre une photo et de recevoir une
suggestion d’espèce (basée sur le modèle de vision par ordinateur d’iNaturalist).

❌ Ce qu’on sait de l’API de reconnaissance visuelle


Quelques membres de la communauté et les développeurs ont discuté de ce sujet :
• L’API “computer vision” (celle qui fait la suggestion d’espèce selon l’image) est cachée :
elle n’est pas documentée pour un usage général.
• iNaturalist a accordé, dans certains cas, un accès restreint (sur demande) à cette
fonctionnalité pour des personnes / organisations “sélectionnées”.
• Un utilisateur a observé que l’interface web interne fait une requête vers
[Link]/v1/computervision/score_observation/:obse
rvation_id pour obtenir des suggestions d’identification pour une observation
particulière.
• Dans un forum, il est dit explicitement que “the API that gives species suggestions based on
visual similarity is not publicly available.”
Donc, même si techniquement une API existe — au moins en interne — elle n’est pas ouverte à
tous.

💡 Que faire si vous voulez utiliser une API de reconnaissance


1. Contacter l’équipe d’iNaturalist
Vous pouvez envoyer une demande (par exemple à l’adresse mentionnée dans les forums,
comme “carrie at [Link]”) pour expliquer votre projet et demander un accès à l’API
de vision.
2. Utiliser les données publiques + entraîner votre propre modèle
iNaturalist fournit des datasets (photos, taxons, etc.) qui peuvent servir à entraîner un
modèle de reconnaissance d’espèces personnalisé.
Le site “iNaturalist Computer Vision Explorations” mentionne l’usage de modèles internes
et d’images d’iNaturalist pour l’entraînement.
3. Utiliser des alternatives tierces
Il existe d’autres services ou bibliothèques de vision par ordinateur pour la reconnaissance
d’espèces (par exemple des modèles open source, ou des APIs de classification d’images
entraînées sur des bases naturalistes). Si vous voulez, je peux vous donner des services
alternatifs.
Si tu veux, je peux vérifier aujourd’hui s’il y a une nouvelle version publique de cette API de
reconnaissance visuelle, et te donner un exemple concret de requête. Veux-tu que je fasse ça pour
toi ?
pour plantnet peux tu me donner un workflow en python ?
Bien sûr 🌿 Voici un workflow complet en Python pour utiliser l’API de PlantNet afin
d’identifier une plante à partir d’une image.

🌱➡️ 1. Créer une clé API PlantNet


Rendez-vous sur [Link]
Créez un compte, puis allez dans "My projects" → "Create a new project".
Vous obtiendrez une clé API (de la forme xxxxxxxxxxxxxxxxxxxxxxxx).

🧠 2. Comprendre l’API PlantNet


L’endpoint principal pour identifier une plante est :
[Link]
où {project} peut être :

• all (toutes les plantes),


• weurope, neamerica, tropical, etc. (régions spécifiques).

L’API prend une ou plusieurs images et renvoie une liste de suggestions avec un score de
confiance.

🧩 3. Exemple complet👇en Python


Voici un workflow étape par étape
import requests
# --- Configuration ---
API_KEY = "VOTRE_CLE_API_PLANTNET"
PROJECT = "all" # ou "weurope", "neamerica", etc.
URL = f"[Link]
# --- Images à envoyer ---
# Vous pouvez mettre plusieurs fichiers 'images' pour une meilleure
identification
files = [
('images', open("photo_feuille.jpg", 'rb')),
('images', open("photo_fleur.jpg", 'rb'))
]
# --- Métadonnées facultatives ---
data = {
'organs': ['leaf', 'flower'] # organes visibles sur les images
}
# --- Requête POST vers l'API ---
response = [Link](URL, files=files, data=data)
# --- Vérification du résultat ---
if response.status_code == 200:
result = [Link]()
print("Résultats :")
for suggestion in [Link]('results', []):
species = suggestion['species']['scientificNameWithoutAuthor']
score = suggestion['score']
common_names = suggestion['species'].get('commonNames', [])
print(f"- {species} ({', '.join(common_names)}) - Score: {score:.2f}")
else:
print("Erreur :", response.status_code, [Link])

🧾 4. Exemple de sortie
Résultats :
- Taraxacum officinale (Pissenlit) - Score: 0.92
- Hypochaeris radicata (Porcelle enracinée) - Score: 0.04

🧰 5. Conseils utiles
• Plusieurs photos (feuille, fleur, fruit, écorce) → meilleure précision.
• Les organs possibles : "leaf", "flower", "fruit", "bark", "habit",
"other".
• Vous pouvez aussi ajouter une géolocalisation :
data = {
'organs': ['leaf'],
'latitude': 48.8566,
'longitude': 2.3522
}

💡 Option : Exporter le résultat en CSV


import csv
with open("resultats_plantnet.csv", "w", newline="", encoding="utf-8") as f:
writer = [Link](f)
[Link](["Nom scientifique", "Noms communs", "Score"])
for s in result['results']:
[Link]([
s['species']['scientificNameWithoutAuthor'],
", ".join(s['species'].get('commonNames', [])),
s['score']
])

Souhaitez-vous que je t’ajoute une version avec géolocalisation et plusieurs images


automatiquement depuis un dossier (utile pour traiter un lot d’images) ?
oui, je veux bien
Parfait🌿 Voici un workflow complet en Python pour identifier automatiquement des plantes
avec PlantNet, en envoyant toutes les images d’un dossier, avec géolocalisation et export CSV
des résultats.
🌍 1. Installer les dépendances
pip install requests tqdm
(tqdm sert juste à afficher une barre de progression)

🌿 2. Script Python complet


import os
import requests
import csv
from tqdm import tqdm
# --- CONFIGURATION ---
API_KEY = "VOTRE_CLE_API_PLANTNET" # à remplacer
PROJECT = "all" # ou "weurope", "neamerica", etc.
URL = f"[Link]
# Dossier contenant les images
IMAGE_DIR = "images_a_identifier"
# Coordonnées GPS (ex : Paris)
LATITUDE = 48.8566
LONGITUDE = 2.3522
# Fichier CSV de sortie
CSV_PATH = "resultats_plantnet.csv"
# --- INITIALISATION DU CSV ---
with open(CSV_PATH, "w", newline="", encoding="utf-8") as csvfile:
writer = [Link](csvfile)
[Link](["Image", "Nom scientifique", "Noms communs", "Score",
"Famille"])
# --- TRAITEMENT DES IMAGES ---
for filename in tqdm([Link](IMAGE_DIR), desc="Analyse des images"):
if not [Link]().endswith((".jpg", ".jpeg", ".png")):
continue # ignore les fichiers non image
image_path = [Link](IMAGE_DIR, filename)
files = [('images', open(image_path, 'rb'))]
# Vous pouvez ajuster le type d’organe ici
data = {
'organs': ['leaf'],
'latitude': LATITUDE,
'longitude': LONGITUDE
}
try:
response = [Link](URL, files=files, data=data)

print(f"
continue

if response.status_code != 200:
Erreur pour {filename}: {response.status_code}")

result = [Link]()
top = [Link]('results', [])[0] if [Link]('results') else None
if top:
species = top['species']['scientificNameWithoutAuthor']
common = ", ".join(top['species'].get('commonNames', []))
score = round(top['score'], 3)
family = top['species']['family']['scientificName']
else:
species, common, score, family = "Inconnu", "", 0, ""
# Enregistre dans le CSV
with open(CSV_PATH, "a", newline="", encoding="utf-8") as csvfile:
writer = [Link](csvfile)
[Link]([filename, species, common, score, family])

print("\n
print(f" ⚠️
except Exception as e:

✅ Erreur pour {filename}: {e}")


Analyse terminée. Résultats enregistrés dans", CSV_PATH)
🧠 Fonctionnement
• Le script parcourt tous les fichiers .jpg, .jpeg, .png du dossier
images_a_identifier/.
• Chaque image est envoyée à PlantNet avec ses coordonnées GPS (améliore la précision).
• Le résultat le plus probable (espèce, noms communs, score, famille) est enregistré dans un
fichier CSV.

🪴 Exemple de résultat resultats_plantnet.csv


Image Nom scientifique Noms communs Score Famille
[Link] Taraxacum officinale Pissenlit 0.912 Asteraceae
[Link] Rosa canina Églantier 0.743 Rosaceae

🌟 Bonus (facultatif)
Tu peux aussi :
• Envoyer plusieurs organes :
data['organs'] = ['leaf', 'flower']
• Ajouter un filtrage par score pour ignorer les résultats trop faibles.
• Automatiser l’upload à partir d’un smartphone via un répertoire partagé (par ex. Google
Drive ou Syncthing).

Souhaite-tu que je t’ajoute une version du script qui gère plusieurs photos par plante (ex :
feuille + fleur du même spécimen) ?
Cela permet d’obtenir une identification plus fiable pour chaque espèce.
could you give me an heic to jpg convert in python ?
Absolutely ✅ — here’s how you can convert HEIC images to JPG in Python.
(HEIC is the format used by iPhones, and it’s not natively supported by Pillow — but we can
handle it easily.)

🧩 Option 1 — Using pillow-heif (best and simplest)


🪄 Install dependencies
🧠 Code example
pip install pillow pillow-heif

from PIL import Image


import pillow_heif
import os
# Input and output folders
input_dir = "heic_images"
output_dir = "jpg_images"
[Link](output_dir, exist_ok=True)
# Convert all .heic files in the folder
for filename in [Link](input_dir):
if [Link]().endswith(".heic"):
input_path = [Link](input_dir, filename)
output_path = [Link](output_dir, [Link](".", 1)[0] +
".jpg")
# Load HEIC and convert
heif_file = pillow_heif.read_heif(input_path)
image = [Link](
heif_file.mode,
heif_file.size,
heif_file.data,
"raw"
)

print(f" ✅
[Link](output_path, "JPEG", quality=90)
Converted: {filename} → {output_path}")
This will convert every .heic file in heic_images/ to .jpg in jpg_images/.

🧰 Option 2 — Using pyheif (alternative method)


Install:
pip install pyheif pillow

Code:
import pyheif
from PIL import Image
import os
input_dir = "heic_images"
output_dir = "jpg_images"
[Link](output_dir, exist_ok=True)
for filename in [Link](input_dir):
if [Link]().endswith(".heic"):
input_path = [Link](input_dir, filename)
output_path = [Link](output_dir, [Link](".", 1)[0] +
".jpg")
heif_file = [Link](input_path)
image = [Link](
heif_file.mode,
heif_file.size,
heif_file.data,
"raw"
)

print(f" ✅
[Link](output_path, "JPEG", quality=90)
Converted {filename} → {output_path}")

⚡ Notes
• pillow-heif is faster and officially recommended by Pillow maintainers.
• Both methods preserve EXIF metadata by default (you can disable it if needed).
• You can easily adapt this to batch-convert whole photo folders.

Would you like me to extend this so it auto-converts HEIC to JPG and then uploads the results
to PlantNet (like a full workflow)?
I get this error
Got it 👍 — can you please copy-paste (or screenshot) the exact error message you’re getting?
The cause depends on what library you’re using (pillow-heif or pyheif), so the error text is
important — common ones include:
• OSError: cannot identify image file → Pillow can’t read HEIC (missing
plugin).
• ModuleNotFoundError: No module named 'pillow_heif' → library not
installed.
• ValueError: unknown mode → HEIC color mode not handled properly.

Once you share the full traceback or message, I’ll tell you exactly what to fix (usually a one-line
change).
--------------------------------------------------------------------------- TypeError Traceback (most recent
call last) Cell In[14], line 6 4 output_path = [Link](IMAGE_DIR, [Link](".", 1)[0] +
".jpg") 5 heif_file = pillow_heif.read_heif(input_path) ----> 6 image = [Link]( 7
heif_file.mode, 8 heif_file.size, 9 heif_file.data, 10 "raw" 11 ) File ~/anaconda3/lib/python3.11/site-
packages/PIL/[Link], in frombytes(mode, size, data, decoder_name, *args) 2958 """ 2959
Transpose image (flip or rotate in 90 degree steps) 2960 (...) 2965 :returns: Returns a flipped or
rotated copy of this image. 2966 """ 2968 [Link]() -> 2969 return
self._new([Link](method)) File
~/anaconda3/lib/python3.11/site-packages/PIL/[Link], in frombytes(self, data,
decoder_name, *args) 824 raise ValueError(msg) 825 data = [Link]("xbm") --> 826 return
b"".join( 827 [ 828 f"#define {name}_width {[Link][0]}\n".encode("ascii"), 829 f"#define
{name}_height {[Link][1]}\n".encode("ascii"), 830 f"static char {name}_bits[] = {{\
n".encode("ascii"), 831 data, 832 b"};", 833 ] 834 ) TypeError: argument 1 must be read-only bytes-
like object, not memoryview
Perfect — thank you! That error (TypeError: argument 1 must be read-only
bytes-like object, not memoryview) happens because
pillow_heif.read_heif() returns a memoryview object for the image data, but
[Link]() expects raw bytes.

🎉
You can fix it simply by using the higher-level helper provided by pillow-heif — it integrates
directly with Pillow. You don’t need to manually call [Link]() at all

✅ Fixed and simplified version


from PIL import Image
import pillow_heif
import os
# Automatically register HEIF support in Pillow
pillow_heif.register_heif_opener()
# Input / output directories
input_dir = "heic_images"
output_dir = "jpg_images"
[Link](output_dir, exist_ok=True)
# Convert all HEIC images
for filename in [Link](input_dir):
if [Link]().endswith(".heic"):
input_path = [Link](input_dir, filename)
output_path = [Link](output_dir, [Link](".", 1)[0] +
".jpg")
# Pillow now directly understands HEIC
image = [Link](input_path)

print(f" ✅
[Link](output_path, "JPEG", quality=90)
Converted {filename} → {output_path}")

💡 Explanation
• pillow_heif.register_heif_opener() tells Pillow to automatically decode
HEIC/HEIF files.
• Then you can just use [Link]() and .save() normally — no need for manual
conversion or dealing with memory buffers.

🧪✅ Example run
✅ Converted IMG_1234.HEIC → jpg_images/IMG_1234.jpg
Converted IMG_1235.HEIC → jpg_images/IMG_1235.jpg

Would you like me to extend this script so it automatically converts all HEIC → JPG and then

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