UW-Madison LOCI
- 34 followers
- Madison, WI, USA
- https://loci.wisc.edu
- @UWMadisonLOCI
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Repositories
- qupath-extension-cell-analysis-tools Public
Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath
uw-loci/qupath-extension-cell-analysis-tools’s past year of commit activity - curvelets Public
Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)
uw-loci/curvelets’s past year of commit activity - qupath-extension-fiber-analysis Public
QuPath extension for fiber straightness, TWOMBLI-derived morphometrics, and GLCM texture analysis on segmented collagen fibers (Java + Appose Python).
uw-loci/qupath-extension-fiber-analysis’s past year of commit activity - flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.
uw-loci/flamingo-stitcher’s past year of commit activity - qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager
uw-loci/qupath-extension-qpsc’s past year of commit activity - qupath-extension-class-distribution Public
Live pie chart of annotation class distribution across a QuPath project, with over/under-representation highlighting for training-data hygiene.
uw-loci/qupath-extension-class-distribution’s past year of commit activity
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