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11 repositories

StressGranules
Public
This repository contains the analyses pertaining to {insert doi}
Python
•
MIT License
•0•0•0•0•Updated Jun 15, 2026Jun 15, 2026
markeR
Public
🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R
gene-sets gene-expression r-package
gene-sets gene-expression r-package phenotypes transcriptomics rna-seq-data gene-signatures
R
•0•10•6•1•Updated Jun 15, 2026Jun 15, 2026
scStudio
Public
A User-Friendly Web Application for Intuitive and Comprehensive scRNA-seq Data Analysis
R
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GNU General Public License v3.0
•3•8•0•0•Updated May 28, 2026May 28, 2026
CHARM
Public
Comprehensive Hub for Alternative Regulatory Mapping
gene-expression rna-binding-proteins rna-binding
gene-expression rna-binding-proteins rna-binding splicing splicing-regulation rna-maps
R
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MIT License
•0•4•1•0•Updated May 6, 2026May 6, 2026
circStudio
Public
Python package for preprocessing, modeling, and analyzing actigraphy time series.
timeseries sleep wearables
timeseries sleep wearables biological-rhythms sleep-analysis actigraphy circadian-rhythm actigraphy-data
Python
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GNU General Public License v3.0
•2•3•0•0•Updated Mar 4, 2026Mar 4, 2026
voyAGEr
Public
⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues
bioinformatics web-app computational-biology
bioinformatics web-app computational-biology gene-expression human gtex transcriptome ageing
HTML
•1•2•1•0•Updated Jul 14, 2025Jul 14, 2025
Template_PhDTheses_FMUL
Public
Template for PhD Theses from FMUL
BibTeX Style
•1•1•0•0•Updated Jul 1, 2025Jul 1, 2025
compbio-app-server
Public
CompBio app server to host Python and R Shiny web apps
python docker nginx
python docker nginx web-server web server docker-compose shiny rstudio celery
HTML
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MIT License
•4•7•1•0•Updated May 30, 2025May 30, 2025
MuscleImmuneAging
Public
Supplementary files related to the methods used to analyze scRNA-seq data from the Sousa et al. paper, "The Immune Landscape of Murine Skeletal Muscle Regenerat…
HTML
•1•2•0•0•Updated Jan 3, 2025Jan 3, 2025
MCT
Public
Scripts used for data analysis in the manuscript: "Sustained macrophage reprogramming is required for CD8 T cell-dependent long-term tumor resolution"
HTML
•1•0•0•0•Updated Jan 2, 2025Jan 2, 2025
betAS
Public
Intuitive analysis and visualisation of differential alternative splicing based on beta distributions.
r web-app visualisation
r web-app visualisation computational-biology differential-alternative-splicing beta-distributions
R
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Other
•4•12•0•0•Updated Apr 23, 2024Apr 23, 2024

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Disease Transcriptomics Lab

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All

11 repositories

StressGranules

markeR

scStudio

CHARM

circStudio

voyAGEr

Template_PhDTheses_FMUL

compbio-app-server

MuscleImmuneAging

MCT

betAS

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All

Repositories list

11 repositories