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Pull requests: nf-core/modules

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189 Open 8,517 Closed
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Pull requests list

Swap lofreq to topics size/l
#11978 opened Jun 11, 2026 by SPPearce Contributor Loading…
7
2
Add the finaletoolkit/aggbw module
#11975 opened Jun 11, 2026 by lbeltrame Contributor Loading…
12 of 17 tasks
1
@lbeltrame
4
Add HDL rg module
#11971 opened Jun 10, 2026 by lyh970817 Contributor Loading…
14 tasks done
Add HDL h2 module
#11970 opened Jun 10, 2026 by lyh970817 Contributor Loading…
14 tasks done
Add varlociraptor/filterfdr and update other varlo modules Ready for Review
#11964 opened Jun 10, 2026 by famosab Contributor Loading…
17 tasks
10
feat(fasta_gtf_bam_rpbp): add subworkflow size/l
#11962 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/selectfinalpredictionset): add module size/m
#11961 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/estimateorfbayesfactors): add module size/m
#11960 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/extractorfprofiles): add module size/m
#11959 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/getperiodiclengthsoffsets): add module size/m
#11958 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/selectperiodicoffsets): add module Ready for Review size/m
#11957 opened Jun 10, 2026 by pinin4fjords Member Loading…
feat(rpbp/estimatemetagenebayesfactors): add module Ready for Review size/m
#11956 opened Jun 10, 2026 by pinin4fjords Member Loading…
1
feat(rpbp/extractmetageneprofiles): add module Ready for Review size/m
#11955 opened Jun 10, 2026 by pinin4fjords Member Loading…
6
Add new module: caddsv/get Ready for Review size/s
#11953 opened Jun 10, 2026 by manascripts Member Loading…
11 of 17 tasks
1
Add plink_gwas_regenie subworkflow
#11938 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add plink_fit_regenie subworkflow
#11937 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add new component cnvkit/segment Ready for Review
#11936 opened Jun 9, 2026 by aadecock Contributor Loading…
12 of 17 tasks
1
@aadecock
Add new refinegems nf-core module with config-generation interface
#11935 opened Jun 9, 2026 by Copilot AI • Draft
1
@brovolia
POC Use of nfcore.utils for R templace
#11933 opened Jun 9, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
4
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
12 of 17 tasks
1
3
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
2
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
9
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